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view test-data/Kleborate_results_vanilla.txt @ 1:374b2e9ade86 draft

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planemo upload for repository https://github.com/katholt/Kleborate commit a405d2b34f603ba0c026d76c3cfff70746ea14f9
author iuc
date Sun, 22 Jan 2023 10:52:38 +0000
parents 383036561810
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strain	species	species_match	contig_count	N50	largest_contig	total_size	ambiguous_bases	QC_warnings	ST	virulence_score	Yersiniabactin	YbST	Colibactin	CbST	Aerobactin	AbST	Salmochelin	SmST	RmpADC	RmST	rmpA2	wzi	K_locus	Chr_ST	gapA	infB	mdh	pgi	phoE	rpoB	tonB	ybtS	ybtX	ybtQ	ybtP	ybtA	irp2	irp1	ybtU	ybtT	ybtE	fyuA	clbA	clbB	clbC	clbD	clbE	clbF	clbG	clbH	clbI	clbL	clbM	clbN	clbO	clbP	clbQ	iucA	iucB	iucC	iucD	iutA	iroB	iroC	iroD	iroN	rmpA	rmpD	rmpC	spurious_virulence_hits
KP011_S63.scfd	unknown		48	50378	86784	922210	yes (425)	ambiguous_bases	NA	0	-	0	-	0	-	0	-	0	-	0	-	wzi114	KL30 (KL2, KL8, KL111)	NA	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
KP012_S64.scfd	unknown		54	48797	70916	961311	yes (413)	ambiguous_bases	NA	0	-	0	-	0	-	0	-	0	-	0	-	-	-	NA	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-