Mercurial > repos > iuc > lexicmap

changeset 4:feedc23590ad draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/lexicmap commit eceb4b3a69c5a755feac55801e85eb914a669042
author iuc
date Thu, 20 Nov 2025 19:38:51 +0000
parents cefde4c7f92e
children
files lexicmap.xml macros.xml
diffstat 2 files changed, 6 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/lexicmap.xml	Fri Sep 26 20:47:13 2025 +0000
+++ b/lexicmap.xml	Thu Nov 20 19:38:51 2025 +0000
@@ -88,8 +88,8 @@
         <param name="query" type="data" format="fasta.gz" label="LexicMap query file" multiple="true"  help=""/>
         <conditional name="db_opts">
             <param name="db_opts_selector" type="select" label="LexiMap index source">
-              <option value="histdb" selected="true">From your history</option>
-              <option value="db">Locally installed LexicMap indexes</option>
+              <option value="histdb">From your history</option>
+              <option value="db" selected="true">Locally installed LexicMap indexes</option>
             </param>
             <when value="histdb">
                 <param name="histdb" type="data" format="lexicmap_index" optional="false" multiple="true" label="LexicMap index" />
@@ -115,8 +115,8 @@
             <param argument="--min-qcov-per-hsp" type="float" optional="true" help="Minimum query coverage (percentage) per HSP." />
             <param argument="--seed-max-dist" value="1000" type="integer" label="Seed max dist" help="Minimum distance between seeds in seed chaining. It should be &lt;= contig interval length in database." />
             <param argument="--seed-max-gap" value="1000" type="integer" label="Seed max gap" help="Minimum gap in seed chaining." />
-            <param argument="--seed-min-prefix" value="15" type="integer" label="Seed min prefix" help="Minimum (prefix/suffix) length of matched seeds (anchors)." />
-            <param argument="--seed-min-single-prefix" value="17" type="integer" label="Seed min single prefix" help="Minimum (prefix/suffix) length of matched seeds (anchors) if there's only one pair of seeds matched." />
+            <param argument="--seed-min-prefix" value="17" type="integer" label="Seed min prefix" help="Minimum (prefix/suffix) length of matched seeds (anchors)." />
+            <param argument="--seed-min-single-prefix" value="19" type="integer" label="Seed min single prefix" help="Minimum (prefix/suffix) length of matched seeds (anchors) if there's only one pair of seeds matched." />
         </section>
     </inputs>
     <outputs>
@@ -276,4 +276,4 @@
     @info@
         ]]></help>
     <expand macro="citations" />
-</tool>
\ No newline at end of file
+</tool>
--- a/macros.xml	Fri Sep 26 20:47:13 2025 +0000
+++ b/macros.xml	Thu Nov 20 19:38:51 2025 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">0.8.0</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@PROFILE_VERSION@">25.0</token>
     <token name="@FASTA_TYPES@">fasta.gz,fasta</token>
     <xml name="requirements">