Mercurial > repos > iuc > lineagespot
view test-data/lineage_report.txt @ 1:99494998688a draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 6a6a37f2574954dae65f9ec407fe38594ed37659
| author | iuc |
|---|---|
| date | Sun, 25 Feb 2024 09:49:20 +0000 |
| parents | 6ddf5a9ce4a5 |
| children |
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lineage sample meanAF meanAF_uniq minAF_uniq_nonzero N lineage N. rules lineage prop. AY.1 SampleA_freebayes_ann 0.0833333333333333 0 1 31 0.032258064516129 AY.1 SampleB_freebayes_ann 0.0833333333333333 0 1 31 0.032258064516129 AY.1 SampleC_freebayes_ann 0.431625679248108 0 6 31 0.193548387096774 AY.2 SampleA_freebayes_ann 0.0769230769230769 0 1 29 0.0344827586206897 AY.2 SampleB_freebayes_ann 0.0769230769230769 0 1 29 0.0344827586206897 AY.2 SampleC_freebayes_ann 0.331178263776345 0.119819132680874 0.159433531292828 4 29 0.137931034482759 AY.3 SampleA_freebayes_ann 0.0909090909090909 0 1 30 0.0333333333333333 AY.3 SampleB_freebayes_ann 0.0909090909090909 0 1 30 0.0333333333333333 AY.3 SampleC_freebayes_ann 0.446013201889711 0 6 30 0.2 AY.3.1 SampleA_freebayes_ann 0.0833333333333333 0 1 32 0.03125 AY.3.1 SampleB_freebayes_ann 0.077724358974359 0.00520833333333333 0.0104166666666667 1 32 0.03125 AY.3.1 SampleC_freebayes_ann 0.431625679248108 0 6 32 0.1875 B.1.1.7 SampleA_freebayes_ann 0.707868155236576 0 12 21 0.571428571428571 B.1.1.7 SampleB_freebayes_ann 0.795825304913559 0 16 21 0.761904761904762 B.1.1.7 SampleC_freebayes_ann 0.367879297939765 0 3 21 0.142857142857143 B.1.1.7+S_E484K SampleA_freebayes_ann 0.672474747474747 0 12 22 0.545454545454545 B.1.1.7+S_E484K SampleB_freebayes_ann 0.757928861822438 0 16 22 0.727272727272727 B.1.1.7+S_E484K SampleC_freebayes_ann 0.348517229627146 0 3 22 0.136363636363636 B.1.351 SampleA_freebayes_ann 0.171368704970856 0 2 18 0.111111111111111 B.1.351 SampleB_freebayes_ann 0.133333333333333 0 2 18 0.111111111111111 B.1.351 SampleC_freebayes_ann 0.0908336944145888 0 1 18 0.0555555555555556 B.1.351.2 SampleA_freebayes_ann 0.14688746140359 0 2 21 0.0952380952380952 B.1.351.2 SampleB_freebayes_ann 0.111111111111111 0 2 21 0.0952380952380952 B.1.351.2 SampleC_freebayes_ann 0.0756947453454907 0 1 21 0.0476190476190476 B.1.351.3 SampleA_freebayes_ann 0.14688746140359 0 2 22 0.0909090909090909 B.1.351.3 SampleB_freebayes_ann 0.111111111111111 0 2 22 0.0909090909090909 B.1.351.3 SampleC_freebayes_ann 0.102681930767192 0 1 22 0.0454545454545455 B.1.617.2 SampleA_freebayes_ann 0.111111111111111 0 1 21 0.0476190476190476 B.1.617.2 SampleB_freebayes_ann 0.111111111111111 0 1 21 0.0476190476190476 B.1.617.2 SampleC_freebayes_ann 0.417401700987995 0 4 21 0.19047619047619 P.1 SampleA_freebayes_ann 0.136363636363636 0 3 22 0.136363636363636 P.1 SampleB_freebayes_ann 0.13570487483531 0 3 22 0.136363636363636 P.1 SampleC_freebayes_ann 0.0648812102961349 0 1 22 0.0454545454545455 P.1.1 SampleA_freebayes_ann 0.0952380952380952 0 2 21 0.0952380952380952 P.1.1 SampleB_freebayes_ann 0.0952380952380952 0 2 21 0.0952380952380952 P.1.1 SampleC_freebayes_ann 0.0648812102961349 0 1 21 0.0476190476190476 P.1.2 SampleA_freebayes_ann 0.136363636363636 0 3 22 0.136363636363636 P.1.2 SampleB_freebayes_ann 0.13570487483531 0 3 22 0.136363636363636 P.1.2 SampleC_freebayes_ann 0.0648812102961349 0 1 22 0.0454545454545455