comparison consensus.xml @ 4:84dcccebad3d draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"

3:a95960a63220

<tool id="medaka_consensus" name="medaka: Consensus" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
    <description>Assembly polishing via neural networks</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>

$tag_keep_missing
## required
alignment.bam ## bam
'$out_result' ## output

|& tee '$out_log'
    ]]></command>
    <inputs>
        <param argument="bam" type="data" format="bam" label="Select input alignment"/>
        <expand macro="model" argument="--model"/>
        <expand macro="b" argument="--batch_size"/>

4:84dcccebad3d

<tool id="medaka_consensus" name="medaka: Consensus" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
    <description>Assembly polishing via neural networks</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>

$tag_keep_missing
## required
alignment.bam ## bam
'$out_result' ## output

2>&1 | tee '$out_log'
    ]]></command>
    <inputs>
        <param argument="bam" type="data" format="bam" label="Select input alignment"/>
        <expand macro="model" argument="--model"/>
        <expand macro="b" argument="--batch_size"/>