Mercurial > repos > iuc > medaka_consensus

diff consensus.xml @ 4:84dcccebad3d draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
author iuc
date Tue, 01 Sep 2020 03:07:44 -0400
parents 12c40c8c86db
children 5901bb391198
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--- a/consensus.xml	Thu Jun 18 05:07:58 2020 -0400
+++ b/consensus.xml	Tue Sep 01 03:07:44 2020 -0400
@@ -1,4 +1,4 @@
-<tool id="medaka_consensus" name="medaka: Consensus" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
+<tool id="medaka_consensus" name="medaka: Consensus" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
     <description>Assembly polishing via neural networks</description>
     <macros>
         <import>macros.xml</import>
@@ -44,7 +44,7 @@
 alignment.bam ## bam
 '$out_result' ## output
 
-|& tee '$out_log'
+2>&1 | tee '$out_log'
     ]]></command>
     <inputs>
         <param argument="bam" type="data" format="bam" label="Select input alignment"/>