Mercurial > repos > iuc > medaka_consensus_pipeline
comparison medaka_consensus.xml @ 11:8dfe8a52346f draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 69eb0054f76057436094943f262a74c982d8de42"
| author | iuc |
|---|---|
| date | Sun, 12 Sep 2021 20:35:45 +0000 |
| parents | 1ca4ce7241fd |
| children | 72b5e9dda577 |
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| 10:1ca4ce7241fd | 11:8dfe8a52346f |
|---|---|
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
| 7 <expand macro="version_command"/> | 7 <expand macro="version_command"/> |
| 8 <command detect_errors="exit_code"><![CDATA[ | 8 <command detect_errors="exit_code"><![CDATA[ |
| 9 ln -s '$d' 'input_assembly.fa' && | |
| 9 medaka_consensus | 10 medaka_consensus |
| 10 ## optional | 11 ## optional |
| 11 -m ${m} | 12 -m ${m} |
| 12 -b $b | 13 -b $b |
| 13 -o results | 14 -o results |
| 14 -t \${GALAXY_SLOTS:-4} | 15 -t \${GALAXY_SLOTS:-4} |
| 15 ## required | 16 ## required |
| 16 -i '$i' | 17 -i '$i' |
| 17 -d '$d' | 18 -d 'input_assembly.fa' |
| 18 | 19 |
| 19 2>&1 | tee '$out_log' | 20 2>&1 | tee '$out_log' |
| 20 ]]></command> | 21 ]]></command> |
| 21 <inputs> | 22 <inputs> |
| 22 <param argument="-i" type="data" format="fastq,fastq.gz,fastqsanger,fastqsanger.gz,fasta,fasta.gz" label="Select basecalls"/> | 23 <param argument="-i" type="data" format="fastq,fastq.gz,fastqsanger,fastqsanger.gz,fasta,fasta.gz" label="Select basecalls"/> |