Mercurial > repos > iuc > medaka_consensus_pipeline
diff medaka_consensus.xml @ 11:8dfe8a52346f draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 69eb0054f76057436094943f262a74c982d8de42"
author | iuc |
---|---|
date | Sun, 12 Sep 2021 20:35:45 +0000 |
parents | 1ca4ce7241fd |
children | 72b5e9dda577 |
line wrap: on
line diff
--- a/medaka_consensus.xml Thu Apr 22 20:25:13 2021 +0000 +++ b/medaka_consensus.xml Sun Sep 12 20:35:45 2021 +0000 @@ -6,6 +6,7 @@ <expand macro="requirements"/> <expand macro="version_command"/> <command detect_errors="exit_code"><![CDATA[ +ln -s '$d' 'input_assembly.fa' && medaka_consensus ## optional -m ${m} @@ -14,7 +15,7 @@ -t \${GALAXY_SLOTS:-4} ## required -i '$i' --d '$d' +-d 'input_assembly.fa' 2>&1 | tee '$out_log' ]]></command>