Mercurial > repos > iuc > medaka_consensus_pipeline
comparison medaka_consensus.xml @ 4:a1b70f038b4a draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit c02f74da66f51b431b7cd8bd0d1cffde267e3332"
author | iuc |
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date | Tue, 13 Oct 2020 15:59:11 +0000 |
parents | 35666d44fe7a |
children | 1ca4ce7241fd |
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3:35666d44fe7a | 4:a1b70f038b4a |
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1 <tool id="medaka_consensus_pipeline" name="medaka: Consensus pipeline" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@"> | 1 <tool id="medaka_consensus_pipeline" name="medaka consensus pipeline" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@"> |
2 <description>Assembly polishing via neural networks</description> | 2 <description>Assembly polishing via neural networks</description> |
3 <macros> | 3 <macros> |
4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
74 <has_text_matching expression=".+GTCAGAATCGCGTTCAGCGCGTTTCAGCGGTGCGTACAATT.+"/> | 74 <has_text_matching expression=".+GTCAGAATCGCGTTCAGCGCGTTTCAGCGGTGCGTACAATT.+"/> |
75 </assert_contents> | 75 </assert_contents> |
76 </output> | 76 </output> |
77 <output name="out_probs"> | 77 <output name="out_probs"> |
78 <assert_contents> | 78 <assert_contents> |
79 <!-- <has_size value="192187" delta="100"/> --> | |
80 <has_size value="165271" delta="100"/> | 79 <has_size value="165271" delta="100"/> |
81 </assert_contents> | 80 </assert_contents> |
82 </output> | 81 </output> |
83 <output name="out_calls"> | 82 <output name="out_calls"> |
84 <assert_contents> | 83 <assert_contents> |
85 <!-- <has_size value="533242" delta="100"/> --> | |
86 <has_size value="343197" delta="100"/> | 84 <has_size value="343197" delta="100"/> |
87 </assert_contents> | 85 </assert_contents> |
88 </output> | 86 </output> |
89 </test> | 87 </test> |
90 <!-- #2 --> | 88 <!-- #2 --> |
102 </assert_contents> | 100 </assert_contents> |
103 </output> | 101 </output> |
104 <output name="out_probs"> | 102 <output name="out_probs"> |
105 <assert_contents> | 103 <assert_contents> |
106 <has_size value="166251" delta="100"/> | 104 <has_size value="166251" delta="100"/> |
107 <!-- <has_size value="192710" delta="100"/> --> | |
108 </assert_contents> | 105 </assert_contents> |
109 </output> | 106 </output> |
110 <output name="out_calls"> | 107 <output name="out_calls"> |
111 <assert_contents> | 108 <assert_contents> |
112 <has_size value="343197" delta="100"/> | 109 <has_size value="343197" delta="100"/> |
113 <!-- <has_size value="533163" delta="100"/> --> | |
114 </assert_contents> | 110 </assert_contents> |
115 </output> | 111 </output> |
116 <output name="out_draft"> | 112 <output name="out_draft"> |
117 <assert_contents> | 113 <assert_contents> |
118 <has_line line="chain 3788 4 3792 + 0 3792 4 3788 + 0 3788 1"/> | 114 <has_line line="chain 3788 4 3792 + 0 3792 4 3788 + 0 3788 1"/> |