Mercurial > repos > iuc > medaka_consensus_pipeline
comparison medaka_consensus.xml @ 4:a1b70f038b4a draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit c02f74da66f51b431b7cd8bd0d1cffde267e3332"
| author | iuc |
|---|---|
| date | Tue, 13 Oct 2020 15:59:11 +0000 |
| parents | 35666d44fe7a |
| children | 1ca4ce7241fd |
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| 3:35666d44fe7a | 4:a1b70f038b4a |
|---|---|
| 1 <tool id="medaka_consensus_pipeline" name="medaka: Consensus pipeline" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@"> | 1 <tool id="medaka_consensus_pipeline" name="medaka consensus pipeline" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@"> |
| 2 <description>Assembly polishing via neural networks</description> | 2 <description>Assembly polishing via neural networks</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
| 74 <has_text_matching expression=".+GTCAGAATCGCGTTCAGCGCGTTTCAGCGGTGCGTACAATT.+"/> | 74 <has_text_matching expression=".+GTCAGAATCGCGTTCAGCGCGTTTCAGCGGTGCGTACAATT.+"/> |
| 75 </assert_contents> | 75 </assert_contents> |
| 76 </output> | 76 </output> |
| 77 <output name="out_probs"> | 77 <output name="out_probs"> |
| 78 <assert_contents> | 78 <assert_contents> |
| 79 <!-- <has_size value="192187" delta="100"/> --> | |
| 80 <has_size value="165271" delta="100"/> | 79 <has_size value="165271" delta="100"/> |
| 81 </assert_contents> | 80 </assert_contents> |
| 82 </output> | 81 </output> |
| 83 <output name="out_calls"> | 82 <output name="out_calls"> |
| 84 <assert_contents> | 83 <assert_contents> |
| 85 <!-- <has_size value="533242" delta="100"/> --> | |
| 86 <has_size value="343197" delta="100"/> | 84 <has_size value="343197" delta="100"/> |
| 87 </assert_contents> | 85 </assert_contents> |
| 88 </output> | 86 </output> |
| 89 </test> | 87 </test> |
| 90 <!-- #2 --> | 88 <!-- #2 --> |
| 102 </assert_contents> | 100 </assert_contents> |
| 103 </output> | 101 </output> |
| 104 <output name="out_probs"> | 102 <output name="out_probs"> |
| 105 <assert_contents> | 103 <assert_contents> |
| 106 <has_size value="166251" delta="100"/> | 104 <has_size value="166251" delta="100"/> |
| 107 <!-- <has_size value="192710" delta="100"/> --> | |
| 108 </assert_contents> | 105 </assert_contents> |
| 109 </output> | 106 </output> |
| 110 <output name="out_calls"> | 107 <output name="out_calls"> |
| 111 <assert_contents> | 108 <assert_contents> |
| 112 <has_size value="343197" delta="100"/> | 109 <has_size value="343197" delta="100"/> |
| 113 <!-- <has_size value="533163" delta="100"/> --> | |
| 114 </assert_contents> | 110 </assert_contents> |
| 115 </output> | 111 </output> |
| 116 <output name="out_draft"> | 112 <output name="out_draft"> |
| 117 <assert_contents> | 113 <assert_contents> |
| 118 <has_line line="chain 3788 4 3792 + 0 3792 4 3788 + 0 3788 1"/> | 114 <has_line line="chain 3788 4 3792 + 0 3792 4 3788 + 0 3788 1"/> |