Mercurial > repos > iuc > medaka_variant
changeset 2:d50c1d5b72ce draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 7fec11af843c91c70413844368c1d5f5f78ce45e"
| author | iuc |
|---|---|
| date | Thu, 18 Jun 2020 05:08:21 -0400 |
| parents | 43388fc8ad0b |
| children | e86fcef8ed91 |
| files | macros.xml test-data/variants.vcf.gz |
| diffstat | 2 files changed, 8 insertions(+), 8 deletions(-) [+] |
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--- a/macros.xml Thu May 28 02:38:34 2020 -0400 +++ b/macros.xml Thu Jun 18 05:08:21 2020 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <macros> - <token name="@TOOL_VERSION@">1.0.1</token> + <token name="@TOOL_VERSION@">1.0.3</token> <token name="@PROFILE@">18.01</token> <xml name="requirements"> <requirements> @@ -55,13 +55,13 @@ <option value="r941_min_high_g330">r941_min_high_g330</option> <option value="r941_min_high_g340_rle">r941_min_high_g340_rle</option> <option value="r941_min_high_g344">r941_min_high_g344</option> - <option value="r941_min_high_g351" selected="true">r941_min_high_g351</option> + <option value="r941_min_high_g351">r941_min_high_g351</option> <option value="r941_min_high_g360">r941_min_high_g360</option> <option value="r941_prom_fast_g303">r941_prom_fast_g303</option> <option value="r941_prom_high_g303">r941_prom_high_g303</option> <option value="r941_prom_high_g330">r941_prom_high_g330</option> <option value="r941_prom_high_g344">r941_prom_high_g344</option> - <option value="r941_prom_high_g360">r941_prom_high_g360</option> + <option value="r941_prom_high_g360" selected="true">r941_prom_high_g360</option> <option value="r941_prom_snp_g303">r941_prom_snp_g303</option> <option value="r941_prom_snp_g322">r941_prom_snp_g322</option> <option value="r941_prom_variant_g303">r941_prom_variant_g303</option> @@ -77,14 +77,14 @@ <when value="cached"> <param name="ref_file" type="select" label="Using reference genome" help="Select genome from the list"> <options from_data_table="all_fasta"> - <filter type="sort_by" column="2" /> - <validator type="no_options" message="No reference genomes are available" /> + <filter type="sort_by" column="2"/> + <validator type="no_options" message="No reference genomes are available"/> </options> <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/> </param> </when> <when value="history"> - <param name="ref_file" type="data" format="fasta,fastq" label="Use the following dataset as the reference sequence" help="You can upload a FASTA or FASTQ sequence to the history and use it as reference" /> + <param name="ref_file" type="data" format="fasta,fastq" label="Use the following dataset as the reference sequence" help="You can upload a FASTA or FASTQ sequence to the history and use it as reference"/> </when> </conditional> </xml> @@ -94,11 +94,11 @@ --> <token name="@WID@"><![CDATA[ -medaka is a tool suite to create a consensus sequence from nanopore sequencing data. +*medaka* is a tool suite to create a consensus sequence from nanopore sequencing data. This task is performed using neural networks applied from a pileup of individual sequencing reads against a draft assembly. It outperforms graph-based methods operating on basecalled data, and can be competitive with state-of-the-art signal-based methods, whilst being much faster. ]]></token> <token name="@REFERENCES@"><![CDATA[ More information are available in the `manual <https://nanoporetech.github.io/medaka/index.html>`_ and `github <https://github.com/nanoporetech/medaka>`_. ]]></token> -</macros> +</macros> \ No newline at end of file