Mercurial > repos > iuc > meme_fimo
comparison test-data/meme_output_html_2.html @ 0:fd522a964017 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e96df94dba60050fa28aaf55b5bb095717a5f260
| author | iuc |
|---|---|
| date | Tue, 22 Dec 2015 17:01:51 -0500 |
| parents | |
| children | eca84de658b0 |
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| -1:000000000000 | 0:fd522a964017 |
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| 1 <!DOCTYPE HTML> | |
| 2 <html> | |
| 3 <head> | |
| 4 <meta charset="UTF-8"> | |
| 5 <title>MEME</title> | |
| 6 <script> | |
| 7 // @JSON_VAR data | |
| 8 var data = { | |
| 9 "program": "MEME", | |
| 10 "version": "4.11.0", | |
| 11 "release": "Thu Nov 26 17:48:49 2015 +1000", | |
| 12 "stop_reason": "Stopped because requested number of motifs (1) found.", | |
| 13 "cmd": [ | |
| 14 "meme", | |
| 15 "/Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2490.dat", | |
| 16 "-o", | |
| 17 "/Users/gvk/work/git_workspace/galaxy/database/job_working_directory/001/1929/dataset_2578_files", | |
| 18 "-nostatus", "-sf", "Galaxy_FASTA_Input", "-dna", "-mod", "zoops", | |
| 19 "-nmotifs", "1", "-wnsites", "0.8", "-minw", "8", "-maxw", "50", | |
| 20 "-wg", "11", "-ws", "1", "-maxiter", "50", "-distance", "0.001", | |
| 21 "-prior", "dirichlet", "-b", "0.01", "-plib", | |
| 22 "/Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2577.dat", | |
| 23 "-spmap", "uni", "-spfuzz", "0.5" | |
| 24 ], | |
| 25 "options": { | |
| 26 "mod": "zoops", | |
| 27 "revcomp": false, | |
| 28 "nmotifs": 1, | |
| 29 "minw": 8, | |
| 30 "maxw": 50, | |
| 31 "minsites": 2, | |
| 32 "maxsites": 30, | |
| 33 "wnsites": 0.8, | |
| 34 "spmap": "uni", | |
| 35 "spfuzz": 0.5, | |
| 36 "maxwords": -1, | |
| 37 "prior": "dirichlet", | |
| 38 "b": 0.01, | |
| 39 "maxiter": 50, | |
| 40 "distance": 0.001, | |
| 41 "wg": 11, | |
| 42 "ws": 1, | |
| 43 "noendgaps": false, | |
| 44 "substring": true | |
| 45 }, | |
| 46 "alphabet": { | |
| 47 "name": "DNA", | |
| 48 "like": "dna", | |
| 49 "ncore": 4, | |
| 50 "symbols": [ | |
| 51 { | |
| 52 "symbol": "A", | |
| 53 "name": "Adenine", | |
| 54 "colour": "CC0000", | |
| 55 "complement": "T" | |
| 56 }, { | |
| 57 "symbol": "C", | |
| 58 "name": "Cytosine", | |
| 59 "colour": "0000CC", | |
| 60 "complement": "G" | |
| 61 }, { | |
| 62 "symbol": "G", | |
| 63 "name": "Guanine", | |
| 64 "colour": "FFB300", | |
| 65 "complement": "C" | |
| 66 }, { | |
| 67 "symbol": "T", | |
| 68 "aliases": "U", | |
| 69 "name": "Thymine", | |
| 70 "colour": "008000", | |
| 71 "complement": "A" | |
| 72 }, { | |
| 73 "symbol": "N", | |
| 74 "aliases": "X.", | |
| 75 "name": "Any base", | |
| 76 "equals": "ACGT" | |
| 77 }, { | |
| 78 "symbol": "V", | |
| 79 "name": "Not T", | |
| 80 "equals": "ACG" | |
| 81 }, { | |
| 82 "symbol": "H", | |
| 83 "name": "Not G", | |
| 84 "equals": "ACT" | |
| 85 }, { | |
| 86 "symbol": "D", | |
| 87 "name": "Not C", | |
| 88 "equals": "AGT" | |
| 89 }, { | |
| 90 "symbol": "B", | |
| 91 "name": "Not A", | |
| 92 "equals": "CGT" | |
| 93 }, { | |
| 94 "symbol": "M", | |
| 95 "name": "Amino", | |
| 96 "equals": "AC" | |
| 97 }, { | |
| 98 "symbol": "R", | |
| 99 "name": "Purine", | |
| 100 "equals": "AG" |