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diff test-data/meme_output_html_2.html @ 0:fd522a964017 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e96df94dba60050fa28aaf55b5bb095717a5f260
author iuc
date Tue, 22 Dec 2015 17:01:51 -0500
parents
children eca84de658b0
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/meme_output_html_2.html	Tue Dec 22 17:01:51 2015 -0500
@@ -0,0 +1,100 @@
+<!DOCTYPE HTML>
+<html>
+  <head>
+    <meta charset="UTF-8">
+    <title>MEME</title>
+    <script>
+      // @JSON_VAR data
+      var data = {
+        "program": "MEME",
+        "version": "4.11.0",
+        "release": "Thu Nov 26 17:48:49 2015 +1000",
+        "stop_reason": "Stopped because requested number of motifs (1) found.",
+        "cmd": [
+          "meme",
+          "/Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2490.dat",
+          "-o",
+          "/Users/gvk/work/git_workspace/galaxy/database/job_working_directory/001/1929/dataset_2578_files",
+          "-nostatus", "-sf", "Galaxy_FASTA_Input", "-dna", "-mod", "zoops",
+          "-nmotifs", "1", "-wnsites", "0.8", "-minw", "8", "-maxw", "50",
+          "-wg", "11", "-ws", "1", "-maxiter", "50", "-distance", "0.001",
+          "-prior", "dirichlet", "-b", "0.01", "-plib",
+          "/Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2577.dat",
+          "-spmap", "uni", "-spfuzz", "0.5"
+        ],
+        "options": {
+          "mod": "zoops",
+          "revcomp": false,
+          "nmotifs": 1,
+          "minw": 8,
+          "maxw": 50,
+          "minsites": 2,
+          "maxsites": 30,
+          "wnsites": 0.8,
+          "spmap": "uni",
+          "spfuzz": 0.5,
+          "maxwords": -1,
+          "prior": "dirichlet",
+          "b": 0.01,
+          "maxiter": 50,
+          "distance": 0.001,
+          "wg": 11,
+          "ws": 1,
+          "noendgaps": false,
+          "substring": true
+        },
+        "alphabet": {
+          "name": "DNA",
+          "like": "dna",
+          "ncore": 4,
+          "symbols": [
+            {
+              "symbol": "A",
+              "name": "Adenine",
+              "colour": "CC0000",
+              "complement": "T"
+            }, {
+              "symbol": "C",
+              "name": "Cytosine",
+              "colour": "0000CC",
+              "complement": "G"
+            }, {
+              "symbol": "G",
+              "name": "Guanine",
+              "colour": "FFB300",
+              "complement": "C"
+            }, {
+              "symbol": "T",
+              "aliases": "U",
+              "name": "Thymine",
+              "colour": "008000",
+              "complement": "A"
+            }, {
+              "symbol": "N",
+              "aliases": "X.",
+              "name": "Any base",
+              "equals": "ACGT"
+            }, {
+              "symbol": "V",
+              "name": "Not T",
+              "equals": "ACG"
+            }, {
+              "symbol": "H",
+              "name": "Not G",
+              "equals": "ACT"
+            }, {
+              "symbol": "D",
+              "name": "Not C",
+              "equals": "AGT"
+            }, {
+              "symbol": "B",
+              "name": "Not A",
+              "equals": "CGT"
+            }, {
+              "symbol": "M",
+              "name": "Amino",
+              "equals": "AC"
+            }, {
+              "symbol": "R",
+              "name": "Purine",
+              "equals": "AG"