Mercurial > repos > iuc > meme_meme
comparison test-data/meme_output_test2.html @ 18:19237efe98d1 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
| author | iuc |
|---|---|
| date | Sat, 09 Apr 2022 08:34:02 +0000 |
| parents | 3f0dd362b755 |
| children |
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| 17:e7242484929c | 18:19237efe98d1 |
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| 1 <!DOCTYPE HTML> | 1 <script> |
| 2 <html> | 2 { |
| 3 <head> | 3 $("opt_mod").className = data.options.mod; |
| 4 <meta charset="UTF-8"> | 4 $("opt_objfun").textContent = data.options.objfun; |
| 5 <title>MEME</title> | 5 $("opt_spfun").textContent = data.options.spfun; |
| 6 <script> | 6 $("opt_strand").className = (current_alphabet.has_complement() ? (data.options.revcomp ? "both" : "given") : "none"); |
| 7 // @JSON_VAR data | 7 $("opt_nmotifs").textContent = data.options.nmotifs; |
| 8 var data = { | 8 $("opt_evt").textContent = (typeof data.options.evt === "number" ? data.options.evt : "no limit"); |
| 9 "program": "MEME", | 9 $("opt_minw").textContent = data.options.minw; |
| 10 "version": "5.0.5", | 10 $("opt_maxw").textContent = data.options.maxw; |
| 11 "release": "Mon Mar 18 20:12:19 2019 -0700", | 11 $("opt_minsites").textContent = data.options.minsites; |
| 12 "stop_reason": "Stopped because requested number of motifs (1) found.", | 12 $("opt_maxsites").textContent = data.options.maxsites; |
| 13 "cmd": [ | 13 $("opt_wnsites").textContent = data.options.wnsites; |
| 14 "meme", | 14 $("opt_spmap").className = data.options.spmap; |
| 15 "-o", | 15 $("opt_spfuzz").textContent = data.options.spfuzz; |
| 16 "-nostatus", "-maxsize", "1000000", "-sf", "Galaxy_FASTA_Input", | 16 $("opt_prior").className = data.options.prior; |
| 17 "-dna", "-mod", "zoops", "-nmotifs", "1", "-wnsites", "0.8", | 17 if (data.options.prior == "dirichlet") { |
| 18 "-minw", "8", "-maxw", "50", "-wg", "11", "-ws", "1", "-maxiter", | 18 $("opt_prior_source").textContent = make_background_source("Source", data.background.source, true); |
| 19 "50", "-distance", "0.001", "-prior", "dirichlet", "-b", "0.01", | 19 } else { |
| 20 "-plib", | 20 $("opt_prior_source").textContent = (data.options.prior == "addone") ? "motif observed frequencies" : data.options.priors_source; |
| 21 "-spmap", "uni", "-spfuzz", "0.5" | 21 } |
| 22 ], | 22 $("opt_b").textContent = (data.options.b < 0) ? "not applicable" : (data.options.b == 0) ? "intrinsic strength" : data.options.b; |
| 23 "motifs": [ | 23 $("opt_maxiter").textContent = data.options.maxiter; |
| 24 ] | 24 $("opt_distance").textContent = data.options.distance; |
| 25 }; | 25 $("opt_searchsize").textContent = data.options.searchsize; |
| 26 </script> | 26 if (typeof data.options.csites != "undefined") { |
| 27 var site_url = "http://meme-suite.org"; | 27 $("opt_csites").textContent = data.options.csites; |
| 28 } else { | |
| 29 $("opt_csites").parentElement.style.display = "none" | |
| 30 } | |
| 31 if (typeof data.options.wg != "undefined") { | |
| 32 $("opt_wg").textContent = data.options.wg; | |
| 33 } else { | |
| 34 $("opt_wg").parentElement.style.display = "none" | |
| 35 } | |
| 36 if (typeof data.options.ws != "undefined") { | |
| 37 $("opt_ws").textContent = data.options.ws; | |
| 38 } | |
| 39 else { | |
| 40 $("opt_ws").parentElement.style.display = "none" | |
| 41 } | |
| 42 if (typeof data.options.noendgaps != "undefined") { | |
| 43 $("opt_noendgaps").className = (data.options.noendgaps ? "on" : "off"); | |
| 44 } | |
| 45 else { | |
| 46 $("opt_noendgaps").parentElement.style.display = "none" | |
| 47 } | |
| 48 $("opt_substring").className = (data.options.substring ? "on" : "off"); | |
| 49 } | |
| 50 </script> | |
| 51 </div> | |
| 52 <!-- list information on this program --> | |
| 53 <div id="info_sec" class="bar"> | |
| 54 <div class="subsection"> | |
| 55 <h5 id="version">MEME version</h5> | |
| 56 <span id="ins_version"></span> | |
| 57 (Release date: <span id="ins_release"></span>)<br> | |
| 58 </div> | |
| 59 <script> | |
| 60 $("ins_version").innerHTML = data["version"]; | |
| 61 $("ins_release").innerHTML = data["release"]; | |
| 62 </script> | |
| 63 <div class="subsection" id="reference"> <script>print_citation("reference", "MEME");</script></div> | |
| 64 <div class="subsection"> | |
| 65 <h5 id="command">Command line</h5> | |
| 66 <textarea id="cmd" rows="5" style="width:100%;" readonly="readonly"> | |
| 67 </textarea> | |
| 68 <script>$("cmd").value = data["cmd"].join(" ");</script> | |
| 69 </div> | |
| 70 </div> | |
| 71 | |
| 72 </body> | |
| 73 </html> |