Mercurial > repos > iuc > meme_meme
diff test-data/meme_output_test2.html @ 18:19237efe98d1 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
| author | iuc |
|---|---|
| date | Sat, 09 Apr 2022 08:34:02 +0000 |
| parents | 3f0dd362b755 |
| children |
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--- a/test-data/meme_output_test2.html Sat Nov 27 14:38:35 2021 +0000 +++ b/test-data/meme_output_test2.html Sat Apr 09 08:34:02 2022 +0000 @@ -1,27 +1,73 @@ -<!DOCTYPE HTML> -<html> - <head> - <meta charset="UTF-8"> - <title>MEME</title> - <script> - // @JSON_VAR data - var data = { - "program": "MEME", - "version": "5.0.5", - "release": "Mon Mar 18 20:12:19 2019 -0700", - "stop_reason": "Stopped because requested number of motifs (1) found.", - "cmd": [ - "meme", - "-o", - "-nostatus", "-maxsize", "1000000", "-sf", "Galaxy_FASTA_Input", - "-dna", "-mod", "zoops", "-nmotifs", "1", "-wnsites", "0.8", - "-minw", "8", "-maxw", "50", "-wg", "11", "-ws", "1", "-maxiter", - "50", "-distance", "0.001", "-prior", "dirichlet", "-b", "0.01", - "-plib", - "-spmap", "uni", "-spfuzz", "0.5" - ], - "motifs": [ - ] - }; - </script> -var site_url = "http://meme-suite.org"; + <script> + { + $("opt_mod").className = data.options.mod; + $("opt_objfun").textContent = data.options.objfun; + $("opt_spfun").textContent = data.options.spfun; + $("opt_strand").className = (current_alphabet.has_complement() ? (data.options.revcomp ? "both" : "given") : "none"); + $("opt_nmotifs").textContent = data.options.nmotifs; + $("opt_evt").textContent = (typeof data.options.evt === "number" ? data.options.evt : "no limit"); + $("opt_minw").textContent = data.options.minw; + $("opt_maxw").textContent = data.options.maxw; + $("opt_minsites").textContent = data.options.minsites; + $("opt_maxsites").textContent = data.options.maxsites; + $("opt_wnsites").textContent = data.options.wnsites; + $("opt_spmap").className = data.options.spmap; + $("opt_spfuzz").textContent = data.options.spfuzz; + $("opt_prior").className = data.options.prior; + if (data.options.prior == "dirichlet") { + $("opt_prior_source").textContent = make_background_source("Source", data.background.source, true); + } else { + $("opt_prior_source").textContent = (data.options.prior == "addone") ? "motif observed frequencies" : data.options.priors_source; + } + $("opt_b").textContent = (data.options.b < 0) ? "not applicable" : (data.options.b == 0) ? "intrinsic strength" : data.options.b; + $("opt_maxiter").textContent = data.options.maxiter; + $("opt_distance").textContent = data.options.distance; + $("opt_searchsize").textContent = data.options.searchsize; + if (typeof data.options.csites != "undefined") { + $("opt_csites").textContent = data.options.csites; + } else { + $("opt_csites").parentElement.style.display = "none" + } + if (typeof data.options.wg != "undefined") { + $("opt_wg").textContent = data.options.wg; + } else { + $("opt_wg").parentElement.style.display = "none" + } + if (typeof data.options.ws != "undefined") { + $("opt_ws").textContent = data.options.ws; + } + else { + $("opt_ws").parentElement.style.display = "none" + } + if (typeof data.options.noendgaps != "undefined") { + $("opt_noendgaps").className = (data.options.noendgaps ? "on" : "off"); + } + else { + $("opt_noendgaps").parentElement.style.display = "none" + } + $("opt_substring").className = (data.options.substring ? "on" : "off"); + } + </script> + </div> + <!-- list information on this program --> + <div id="info_sec" class="bar"> + <div class="subsection"> + <h5 id="version">MEME version</h5> + <span id="ins_version"></span> + (Release date: <span id="ins_release"></span>)<br> + </div> + <script> + $("ins_version").innerHTML = data["version"]; + $("ins_release").innerHTML = data["release"]; + </script> + <div class="subsection" id="reference"> <script>print_citation("reference", "MEME");</script></div> + <div class="subsection"> + <h5 id="command">Command line</h5> + <textarea id="cmd" rows="5" style="width:100%;" readonly="readonly"> + </textarea> + <script>$("cmd").value = data["cmd"].join(" ");</script> + </div> + </div> + + </body> +</html>