Mercurial > repos > iuc > meme_meme

comparison test-data/meme_output_test1.xml @ 20:faa378fa0c81 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
author iuc
date Mon, 14 Jul 2025 21:33:26 +0000
parents 19237efe98d1
children
comparison
equal deleted inserted replaced
19:7ce0fe11b411 20:faa378fa0c81
1 <alphabet_array>
2 <value letter_id="A">-32</value>
3 <value letter_id="C">-680</value>
4 <value letter_id="D">91</value>
5 <value letter_id="E">77</value>
6 <value letter_id="F">7</value>
7 <value letter_id="G">138</value>
8 <value letter_id="H">-20</value>
9 <value letter_id="I">55</value>
10 <value letter_id="K">64</value>
11 <value letter_id="L">107</value>
12 <value letter_id="M">11</value>
13 <value letter_id="N">150</value>
14 <value letter_id="P">142</value>
15 <value letter_id="Q">72</value>
16 <value letter_id="R">87</value>
17 <value letter_id="S">396</value>
18 <value letter_id="T">-148</value>
19 <value letter_id="V">221</value>
20 <value letter_id="W">-140</value>
21 <value letter_id="Y">-36</value>
22 </alphabet_array>
23 <alphabet_array>
24 <value letter_id="A">-11</value>
25 <value letter_id="C">-680</value>
26 <value letter_id="D">89</value>
27 <value letter_id="E">76</value>
28 <value letter_id="F">7</value>
29 <value letter_id="G">137</value>
30 <value letter_id="H">-21</value>
31 <value letter_id="I">55</value>
32 <value letter_id="K">63</value>
33 <value letter_id="L">107</value>
34 <value letter_id="M">10</value>
35 <value letter_id="N">149</value>
36 <value letter_id="P">141</value>
37 <value letter_id="Q">71</value>
38 <value letter_id="R">87</value>
39 <value letter_id="S">396</value>
40 <value letter_id="T">-239</value>
41 <value letter_id="V">220</value>
42 <value letter_id="W">-140</value>
43 <value letter_id="Y">-36</value>
44 </alphabet_array>
45 <alphabet_array>
46 <value letter_id="A">-79</value>
47 <value letter_id="C">41</value>
48 <value letter_id="D">4</value>
49 <value letter_id="E">21</value>
50 <value letter_id="F">-7</value>
51 <value letter_id="G">44</value>
52 <value letter_id="H">-62</value>
53 <value letter_id="I">42</value>
54 <value letter_id="K">-5</value>
55 <value letter_id="L">99</value>
56 <value letter_id="M">0</value>
57 <value letter_id="N">99</value>
58 <value letter_id="P">138</value>
59 <value letter_id="Q">52</value>
60 <value letter_id="R">42</value>
61 <value letter_id="S">399</value>
62 <value letter_id="T">-46</value>
63 <value letter_id="V">223</value>
64 <value letter_id="W">-173</value>
65 <value letter_id="Y">-68</value>
66 </alphabet_array>
67 <alphabet_array>
68 <value letter_id="A">11</value>
69 <value letter_id="C">-677</value>
70 <value letter_id="D">48</value>
71 <value letter_id="E">47</value>
72 <value letter_id="F">-2</value>
73 <value letter_id="G">127</value>
74 <value letter_id="H">-43</value>
75 <value letter_id="I">46</value>
76 <value letter_id="K">27</value>
77 <value letter_id="L">101</value>
78 <value letter_id="M">3</value>
79 <value letter_id="N">124</value>
80 <value letter_id="P">138</value>
81 <value letter_id="Q">60</value>
82 <value letter_id="R">62</value>
83 <value letter_id="S">397</value>
84 <value letter_id="T">-235</value>
85 <value letter_id="V">220</value>
86 <value letter_id="W">-160</value>
87 <value letter_id="Y">-55</value>
88 </alphabet_array>
89 <alphabet_array>
90 <value letter_id="A">-596</value>
91 <value letter_id="C">-820</value>
92 <value letter_id="D">12</value>
93 <value letter_id="E">-21</value>
94 <value letter_id="F">-53</value>
95 <value letter_id="G">-267</value>
96 <value letter_id="H">-74</value>
97 <value letter_id="I">37</value>
98 <value letter_id="K">16</value>
99 <value letter_id="L">44</value>
100 <value letter_id="M">-37</value>
101 <value letter_id="N">98</value>
102 <value letter_id="P">31</value>
103 <value letter_id="Q">9</value>
104 <value letter_id="R">19</value>
105 <value letter_id="S">319</value>
106 <value letter_id="T">212</value>
107 <value letter_id="V">127</value>
108 <value letter_id="W">-193</value>
109 <value letter_id="Y">-95</value>
110 </alphabet_array>
111 <alphabet_array>
112 <value letter_id="A">165</value>
113 <value letter_id="C">-261</value>
114 <value letter_id="D">70</value>
115 <value letter_id="E">110</value>
116 <value letter_id="F">77</value>
117 <value letter_id="G">-521</value>
118 <value letter_id="H">-4</value>
119 <value letter_id="I">147</value>
120 <value letter_id="K">95</value>
121 <value letter_id="L">201</value>
122 <value letter_id="M">90</value>
123 <value letter_id="N">121</value>
124 <value letter_id="P">124</value>
125 <value letter_id="Q">91</value>
126 <value letter_id="R">107</value>
127 <value letter_id="S">425</value>
128 <value letter_id="T">-527</value>
129 <value letter_id="V">314</value>
130 <value letter_id="W">-95</value>
131 <value letter_id="Y">8</value>
132 </alphabet_array>
133 <alphabet_array>
134 <value letter_id="A">-838</value>
135 <value letter_id="C">-990</value>
136 <value letter_id="D">-89</value>
137 <value letter_id="E">-149</value>
138 <value letter_id="F">-151</value>
139 <value letter_id="G">-841</value>
140 <value letter_id="H">-161</value>
141 <value letter_id="I">-117</value>
142 <value letter_id="K">-113</value>
143 <value letter_id="L">-66</value>
144 <value letter_id="M">-209</value>
145 <value letter_id="N">-68</value>
146 <value letter_id="P">-69</value>
147 <value letter_id="Q">-129</value>
148 <value letter_id="R">-91</value>
149 <value letter_id="S">111</value>
150 <value letter_id="T">221</value>
151 <value letter_id="V">-55</value>
152 <value letter_id="W">-255</value>
153 <value letter_id="Y">-173</value>
154 </alphabet_array>
155 <alphabet_array>
156 <value letter_id="A">176</value>
157 <value letter_id="C">-858</value>
158 <value letter_id="D">-79</value>
159 <value letter_id="E">-103</value>
160 <value letter_id="F">-115</value>
161 <value letter_id="G">-717</value>
162 <value letter_id="H">-148</value>
163 <value letter_id="I">-95</value>
164 <value letter_id="K">-108</value>
165 <value letter_id="L">-17</value>
166 <value letter_id="M">-162</value>
167 <value letter_id="N">-61</value>
168 <value letter_id="P">-12</value>
169 <value letter_id="Q">-95</value>
170 <value letter_id="R">-69</value>
171 <value letter_id="S">193</value>
172 <value letter_id="T">-737</value>
173 <value letter_id="V">52</value>
174 <value letter_id="W">-240</value>
175 <value letter_id="Y">-153</value>
176 </alphabet_array>
177 <alphabet_array>
178 <value letter_id="A">134</value>
179 <value letter_id="C">-686</value>
180 <value letter_id="D">0</value>
181 <value letter_id="E">16</value>
182 <value letter_id="F">-12</value>
183 <value letter_id="G">-553</value>
184 <value letter_id="H">-68</value>
185 <value letter_id="I">44</value>
186 <value letter_id="K">-8</value>
187 <value letter_id="L">96</value>
188 <value letter_id="M">-9</value>
189 <value letter_id="N">88</value>
190 <value letter_id="P">124</value>
191 <value letter_id="Q">41</value>
192 <value letter_id="R">36</value>
193 <value letter_id="S">384</value>
194 <value letter_id="T">11</value>
195 <value letter_id="V">216</value>
196 <value letter_id="W">-177</value>
197 <value letter_id="Y">-71</value>
198 </alphabet_array>
199 <alphabet_array>
200 <value letter_id="A">165</value>
201 <value letter_id="C">-261</value>
202 <value letter_id="D">70</value>
203 <value letter_id="E">110</value>
204 <value letter_id="F">77</value>
205 <value letter_id="G">-521</value>
206 <value letter_id="H">-4</value>
207 <value letter_id="I">147</value>
208 <value letter_id="K">95</value>
209 <value letter_id="L">201</value>
210 <value letter_id="M">90</value>
211 <value letter_id="N">121</value>
212 <value letter_id="P">124</value>
213 <value letter_id="Q">91</value>
214 <value letter_id="R">107</value>
215 <value letter_id="S">425</value>
216 <value letter_id="T">-527</value>
217 <value letter_id="V">314</value>
218 <value letter_id="W">-95</value>
219 <value letter_id="Y">8</value>
220 </alphabet_array>
221 <alphabet_array>
222 <value letter_id="A">147</value>
223 <value letter_id="C">-614</value>
224 <value letter_id="D">89</value>
225 <value letter_id="E">129</value>
226 <value letter_id="F">93</value>
227 <value letter_id="G">-121</value>
228 <value letter_id="H">12</value>
229 <value letter_id="I">160</value>
230 <value letter_id="K">113</value>
231 <value letter_id="L">217</value>
232 <value letter_id="M">108</value>
233 <value letter_id="N">144</value>
234 <value letter_id="P">144</value>
235 <value letter_id="Q">111</value>
236 <value letter_id="R">125</value>
237 <value letter_id="S">447</value>
238 <value letter_id="T">-241</value>
239 <value letter_id="V">332</value>
240 <value letter_id="W">-81</value>
241 <value letter_id="Y">22</value>
242 </alphabet_array>
243 </alphabet_matrix>
244 </scores>
245 <probabilities>
246 <alphabet_matrix>
247 <alphabet_array>
248 <value letter_id="A">0.240000</value>
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250 <value letter_id="D">0.000000</value>
251 <value letter_id="E">0.000000</value>
252 <value letter_id="F">0.000000</value>
253 <value letter_id="G">0.680000</value>
254 <value letter_id="H">0.000000</value>
255 <value letter_id="I">0.000000</value>
256 <value letter_id="K">0.000000</value>
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258 <value letter_id="M">0.000000</value>
259 <value letter_id="N">0.000000</value>
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261 <value letter_id="Q">0.000000</value>
262 <value letter_id="R">0.000000</value>
263 <value letter_id="S">0.000000</value>
264 <value letter_id="T">0.080000</value>
265 <value letter_id="V">0.000000</value>
266 <value letter_id="W">0.000000</value>
267 <value letter_id="Y">0.000000</value>
268 </alphabet_array>
269 <alphabet_array>
270 <value letter_id="A">0.280000</value>
271 <value letter_id="C">0.000000</value>
272 <value letter_id="D">0.000000</value>
273 <value letter_id="E">0.000000</value>
274 <value letter_id="F">0.000000</value>
275 <value letter_id="G">0.680000</value>
276 <value letter_id="H">0.000000</value>
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278 <value letter_id="K">0.000000</value>
279 <value letter_id="L">0.000000</value>
280 <value letter_id="M">0.000000</value>
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283 <value letter_id="Q">0.000000</value>
284 <value letter_id="R">0.000000</value>
285 <value letter_id="S">0.000000</value>
286 <value letter_id="T">0.040000</value>
287 <value letter_id="V">0.000000</value>
288 <value letter_id="W">0.000000</value>
289 <value letter_id="Y">0.000000</value>
290 </alphabet_array>
291 <alphabet_array>
292 <value letter_id="A">0.160000</value>
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294 <value letter_id="D">0.000000</value>
295 <value letter_id="E">0.000000</value>
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297 <value letter_id="G">0.360000</value>
298 <value letter_id="H">0.000000</value>
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300 <value letter_id="K">0.000000</value>
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305 <value letter_id="Q">0.000000</value>
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308 <value letter_id="T">0.160000</value>
309 <value letter_id="V">0.000000</value>
310 <value letter_id="W">0.000000</value>
311 <value letter_id="Y">0.000000</value>
312 </alphabet_array>
313 <alphabet_array>
314 <value letter_id="A">0.320000</value>
315 <value letter_id="C">0.000000</value>
316 <value letter_id="D">0.000000</value>
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319 <value letter_id="G">0.640000</value>
320 <value letter_id="H">0.000000</value>
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330 <value letter_id="T">0.040000</value>
331 <value letter_id="V">0.000000</value>
332 <value letter_id="W">0.000000</value>
333 <value letter_id="Y">0.000000</value>
334 </alphabet_array>
335 <alphabet_array>
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337 <value letter_id="C">0.000000</value>
338 <value letter_id="D">0.000000</value>
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341 <value letter_id="G">0.040000</value>
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344 <value letter_id="K">0.000000</value>
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352 <value letter_id="T">0.960000</value>
353 <value letter_id="V">0.000000</value>
354 <value letter_id="W">0.000000</value>
355 <value letter_id="Y">0.000000</value>
356 </alphabet_array>
357 <alphabet_array>
358 <value letter_id="A">0.960000</value>
359 <value letter_id="C">0.040000</value>
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361 <value letter_id="E">0.000000</value>
362 <value letter_id="F">0.000000</value>
363 <value letter_id="G">0.000000</value>
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366 <value letter_id="K">0.000000</value>
367 <value letter_id="L">0.000000</value>
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369 <value letter_id="N">0.000000</value>
370 <value letter_id="P">0.000000</value>
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373 <value letter_id="S">0.000000</value>
374 <value letter_id="T">0.000000</value>
375 <value letter_id="V">0.000000</value>
376 <value letter_id="W">0.000000</value>
377 <value letter_id="Y">0.000000</value>
378 </alphabet_array>
379 <alphabet_array>
380 <value letter_id="A">0.000000</value>
381 <value letter_id="C">0.000000</value>
382 <value letter_id="D">0.000000</value>
383 <value letter_id="E">0.000000</value>
384 <value letter_id="F">0.000000</value>
385 <value letter_id="G">0.000000</value>
386 <value letter_id="H">0.000000</value>
387 <value letter_id="I">0.000000</value>
388 <value letter_id="K">0.000000</value>
389 <value letter_id="L">0.000000</value>
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391 <value letter_id="N">0.000000</value>
392 <value letter_id="P">0.000000</value>
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395 <value letter_id="S">0.000000</value>
396 <value letter_id="T">1.000000</value>
397 <value letter_id="V">0.000000</value>
398 <value letter_id="W">0.000000</value>
399 <value letter_id="Y">0.000000</value>
400 </alphabet_array>
401 <alphabet_array>
402 <value letter_id="A">1.000000</value>
403 <value letter_id="C">0.000000</value>
404 <value letter_id="D">0.000000</value>
405 <value letter_id="E">0.000000</value>
406 <value letter_id="F">0.000000</value>
407 <value letter_id="G">0.000000</value>
408 <value letter_id="H">0.000000</value>
409 <value letter_id="I">0.000000</value>
410 <value letter_id="K">0.000000</value>
411 <value letter_id="L">0.000000</value>
412 <value letter_id="M">0.000000</value>
413 <value letter_id="N">0.000000</value>
414 <value letter_id="P">0.000000</value>
415 <value letter_id="Q">0.000000</value>
416 <value letter_id="R">0.000000</value>
417 <value letter_id="S">0.000000</value>
418 <value letter_id="T">0.000000</value>
419 <value letter_id="V">0.000000</value>
420 <value letter_id="W">0.000000</value>
421 <value letter_id="Y">0.000000</value>
422 </alphabet_array>
423 <alphabet_array>
424 <value letter_id="A">0.760000</value>
425 <value letter_id="C">0.000000</value>
426 <value letter_id="D">0.000000</value>
427 <value letter_id="E">0.000000</value>
428 <value letter_id="F">0.000000</value>
429 <value letter_id="G">0.000000</value>
430 <value letter_id="H">0.000000</value>
431 <value letter_id="I">0.000000</value>
432 <value letter_id="K">0.000000</value>
433 <value letter_id="L">0.000000</value>
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435 <value letter_id="N">0.000000</value>
436 <value letter_id="P">0.000000</value>
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438 <value letter_id="R">0.000000</value>
439 <value letter_id="S">0.000000</value>
440 <value letter_id="T">0.240000</value>
441 <value letter_id="V">0.000000</value>
442 <value letter_id="W">0.000000</value>
443 <value letter_id="Y">0.000000</value>
444 </alphabet_array>
445 <alphabet_array>
446 <value letter_id="A">0.960000</value>
447 <value letter_id="C">0.040000</value>
448 <value letter_id="D">0.000000</value>
449 <value letter_id="E">0.000000</value>
450 <value letter_id="F">0.000000</value>
451 <value letter_id="G">0.000000</value>
452 <value letter_id="H">0.000000</value>
453 <value letter_id="I">0.000000</value>
454 <value letter_id="K">0.000000</value>
455 <value letter_id="L">0.000000</value>
456 <value letter_id="M">0.000000</value>
457 <value letter_id="N">0.000000</value>
458 <value letter_id="P">0.000000</value>
459 <value letter_id="Q">0.000000</value>
460 <value letter_id="R">0.000000</value>
461 <value letter_id="S">0.000000</value>
462 <value letter_id="T">0.000000</value>
463 <value letter_id="V">0.000000</value>
464 <value letter_id="W">0.000000</value>
465 <value letter_id="Y">0.000000</value>
466 </alphabet_array>
467 <alphabet_array>
468 <value letter_id="A">0.840000</value>
469 <value letter_id="C">0.000000</value>
470 <value letter_id="D">0.000000</value>
471 <value letter_id="E">0.000000</value>
472 <value letter_id="F">0.000000</value>
473 <value letter_id="G">0.120000</value>
474 <value letter_id="H">0.000000</value>
475 <value letter_id="I">0.000000</value>
476 <value letter_id="K">0.000000</value>
477 <value letter_id="L">0.000000</value>
478 <value letter_id="M">0.000000</value>
479 <value letter_id="N">0.000000</value>
480 <value letter_id="P">0.000000</value>
481 <value letter_id="Q">0.000000</value>
482 <value letter_id="R">0.000000</value>
483 <value letter_id="S">0.000000</value>
484 <value letter_id="T">0.040000</value>
485 <value letter_id="V">0.000000</value>
486 <value letter_id="W">0.000000</value>
487 <value letter_id="Y">0.000000</value>
488 </alphabet_array>
489 </alphabet_matrix>
490 </probabilities>
491 <regular_expression>
492 [GA][GA][GC][GA]TATA[AT]AA
493 </regular_expression>
494 <contributing_sites>
495 <contributing_site sequence_id="sequence_24" position="12" strand="none" pvalue="1.06e-06" >
496 <left_flank>AAGGCCAGGA</left_flank>
497 <site>
498 <letter_ref letter_id="G"/>
499 <letter_ref letter_id="G"/>
500 <letter_ref letter_id="G"/>
501 <letter_ref letter_id="G"/>
502 <letter_ref letter_id="T"/>
503 <letter_ref letter_id="A"/>
504 <letter_ref letter_id="T"/>
505 <letter_ref letter_id="A"/>
506 <letter_ref letter_id="A"/>
507 <letter_ref letter_id="A"/>
508 <letter_ref letter_id="A"/>
509 </site>
510 <right_flank>GCCTGAGAGC</right_flank>
511 </contributing_site>
512 <contributing_site sequence_id="sequence_25" position="36" strand="none" pvalue="3.41e-06" >
513 <left_flank>ACAGGCCCTG</left_flank>
514 <site>
515 <letter_ref letter_id="G"/>
516 <letter_ref letter_id="G"/>
517 <letter_ref letter_id="C"/>
518 <letter_ref letter_id="A"/>
519 <letter_ref letter_id="T"/>
520 <letter_ref letter_id="A"/>
521 <letter_ref letter_id="T"/>
522 <letter_ref letter_id="A"/>
523 <letter_ref letter_id="A"/>
524 <letter_ref letter_id="A"/>
525 <letter_ref letter_id="A"/>
526 </site>
527 <right_flank>GCC</right_flank>
528 </contributing_site>
529 <contributing_site sequence_id="sequence_19" position="9" strand="none" pvalue="3.41e-06" >
530 <left_flank>CAGGCCCTG</left_flank>
531 <site>
532 <letter_ref letter_id="G"/>
533 <letter_ref letter_id="G"/>
534 <letter_ref letter_id="C"/>
535 <letter_ref letter_id="A"/>
536 <letter_ref letter_id="T"/>
537 <letter_ref letter_id="A"/>
538 <letter_ref letter_id="T"/>
539 <letter_ref letter_id="A"/>
540 <letter_ref letter_id="A"/>
541 <letter_ref letter_id="A"/>
542 <letter_ref letter_id="A"/>
543 </site>
544 <right_flank>GCCCCAGCAG</right_flank>
545 </contributing_site>
546 <contributing_site sequence_id="sequence_9" position="13" strand="none" pvalue="3.41e-06" >
547 <left_flank>GATTCACTGA</left_flank>
548 <site>
549 <letter_ref letter_id="G"/>
550 <letter_ref letter_id="G"/>
551 <letter_ref letter_id="C"/>
552 <letter_ref letter_id="A"/>
553 <letter_ref letter_id="T"/>
554 <letter_ref letter_id="A"/>
555 <letter_ref letter_id="T"/>
556 <letter_ref letter_id="A"/>
557 <letter_ref letter_id="A"/>
558 <letter_ref letter_id="A"/>
559 <letter_ref letter_id="A"/>
560 </site>
561 <right_flank>GGCCCTCTGC</right_flank>
562 </contributing_site>
563 <contributing_site sequence_id="sequence_21" position="7" strand="none" pvalue="4.00e-06" >
564 <left_flank>CCAAGGA</left_flank>
565 <site>
566 <letter_ref letter_id="G"/>
567 <letter_ref letter_id="G"/>
568 <letter_ref letter_id="A"/>
569 <letter_ref letter_id="G"/>
570 <letter_ref letter_id="T"/>
571 <letter_ref letter_id="A"/>
572 <letter_ref letter_id="T"/>
573 <letter_ref letter_id="A"/>
574 <letter_ref letter_id="A"/>
575 <letter_ref letter_id="A"/>
576 <letter_ref letter_id="A"/>
577 </site>
578 <right_flank>GCCCCACAAA</right_flank>
579 </contributing_site>
580 <contributing_site sequence_id="sequence_13" position="13" strand="none" pvalue="5.01e-06" >
581 <left_flank>CCACCAGCTT</left_flank>
582 <site>
583 <letter_ref letter_id="G"/>
584 <letter_ref letter_id="A"/>
585 <letter_ref letter_id="G"/>
586 <letter_ref letter_id="G"/>
587 <letter_ref letter_id="T"/>
588 <letter_ref letter_id="A"/>
589 <letter_ref letter_id="T"/>
590 <letter_ref letter_id="A"/>
591 <letter_ref letter_id="A"/>
592 <letter_ref letter_id="A"/>
593 <letter_ref letter_id="A"/>
594 </site>
595 <right_flank>AGCCCTGTAC</right_flank>
596 </contributing_site>
597 <contributing_site sequence_id="sequence_23" position="15" strand="none" pvalue="6.06e-06" >
598 <left_flank>ATACCCAGGG</left_flank>
599 <site>
600 <letter_ref letter_id="A"/>
601 <letter_ref letter_id="G"/>
602 <letter_ref letter_id="G"/>
603 <letter_ref letter_id="G"/>
604 <letter_ref letter_id="T"/>
605 <letter_ref letter_id="A"/>
606 <letter_ref letter_id="T"/>
607 <letter_ref letter_id="A"/>
608 <letter_ref letter_id="A"/>
609 <letter_ref letter_id="A"/>
610 <letter_ref letter_id="A"/>
611 </site>
612 <right_flank>CCTCAGCAGC</right_flank>
613 </contributing_site>
614 <contributing_site sequence_id="sequence_15" position="21" strand="none" pvalue="8.67e-06" >
615 <left_flank>AATCACTGAG</left_flank>
616 <site>
617 <letter_ref letter_id="G"/>
618 <letter_ref letter_id="A"/>
619 <letter_ref letter_id="T"/>
620 <letter_ref letter_id="G"/>
621 <letter_ref letter_id="T"/>
622 <letter_ref letter_id="A"/>
623 <letter_ref letter_id="T"/>
624 <letter_ref letter_id="A"/>
625 <letter_ref letter_id="A"/>
626 <letter_ref letter_id="A"/>
627 <letter_ref letter_id="A"/>
628 </site>
629 <right_flank>GTCCCAGGGA</right_flank>
630 </contributing_site>
631 <contributing_site sequence_id="sequence_12" position="18" strand="none" pvalue="8.67e-06" >
632 <left_flank>CACCAGAGCT</left_flank>
633 <site>
634 <letter_ref letter_id="G"/>
635 <letter_ref letter_id="G"/>
636 <letter_ref letter_id="G"/>
637 <letter_ref letter_id="A"/>
638 <letter_ref letter_id="T"/>
639 <letter_ref letter_id="A"/>
640 <letter_ref letter_id="T"/>
641 <letter_ref letter_id="A"/>
642 <letter_ref letter_id="T"/>
643 <letter_ref letter_id="A"/>
644 <letter_ref letter_id="A"/>
645 </site>
646 <right_flank>AGAAGGTTCT</right_flank>
647 </contributing_site>
648 <contributing_site sequence_id="sequence_11" position="16" strand="none" pvalue="8.67e-06" >
649 <left_flank>CACTATTGAA</left_flank>
650 <site>
651 <letter_ref letter_id="G"/>
652 <letter_ref letter_id="A"/>
653 <letter_ref letter_id="T"/>
654 <letter_ref letter_id="G"/>
655 <letter_ref letter_id="T"/>
656 <letter_ref letter_id="A"/>
657 <letter_ref letter_id="T"/>
658 <letter_ref letter_id="A"/>
659 <letter_ref letter_id="A"/>
660 <letter_ref letter_id="A"/>
661 <letter_ref letter_id="A"/>
662 </site>
663 <right_flank>TTTCATTTGC</right_flank>
664 </contributing_site>
665 <contributing_site sequence_id="sequence_22" position="2" strand="none" pvalue="1.21e-05" >
666 <left_flank>GA</left_flank>
667 <site>
668 <letter_ref letter_id="G"/>
669 <letter_ref letter_id="A"/>
670 <letter_ref letter_id="C"/>
671 <letter_ref letter_id="A"/>
672 <letter_ref letter_id="T"/>
673 <letter_ref letter_id="A"/>
674 <letter_ref letter_id="T"/>
675 <letter_ref letter_id="A"/>
676 <letter_ref letter_id="A"/>
677 <letter_ref letter_id="A"/>
678 <letter_ref letter_id="A"/>
679 </site>
680 <right_flank>GCCAACATCC</right_flank>
681 </contributing_site>
682 <contributing_site sequence_id="sequence_28" position="32" strand="none" pvalue="1.59e-05" >
683 <left_flank>CCGGCGGGGC</left_flank>
684 <site>
685 <letter_ref letter_id="G"/>
686 <letter_ref letter_id="G"/>
687 <letter_ref letter_id="G"/>
688 <letter_ref letter_id="G"/>
689 <letter_ref letter_id="T"/>
690 <letter_ref letter_id="A"/>
691 <letter_ref letter_id="T"/>
692 <letter_ref letter_id="A"/>
693 <letter_ref letter_id="A"/>
694 <letter_ref letter_id="A"/>
695 <letter_ref letter_id="G"/>
696 </site>
697 <right_flank>GGGGCGG</right_flank>
698 </contributing_site>
699 <contributing_site sequence_id="sequence_20" position="4" strand="none" pvalue="1.59e-05" >
700 <left_flank>CAGA</left_flank>
701 <site>
702 <letter_ref letter_id="G"/>
703 <letter_ref letter_id="G"/>
704 <letter_ref letter_id="G"/>
705 <letter_ref letter_id="G"/>
706 <letter_ref letter_id="T"/>
707 <letter_ref letter_id="A"/>
708 <letter_ref letter_id="T"/>
709 <letter_ref letter_id="A"/>
710 <letter_ref letter_id="A"/>
711 <letter_ref letter_id="A"/>
712 <letter_ref letter_id="G"/>
713 </site>
714 <right_flank>GTTCCGACCA</right_flank>
715 </contributing_site>
716 <contributing_site sequence_id="sequence_6" position="15" strand="none" pvalue="1.68e-05" >
717 <left_flank>CCCACTACTT</left_flank>
718 <site>
719 <letter_ref letter_id="A"/>
720 <letter_ref letter_id="G"/>
721 <letter_ref letter_id="A"/>
722 <letter_ref letter_id="G"/>
723 <letter_ref letter_id="T"/>
724 <letter_ref letter_id="A"/>
725 <letter_ref letter_id="T"/>
726 <letter_ref letter_id="A"/>
727 <letter_ref letter_id="A"/>
728 <letter_ref letter_id="A"/>
729 <letter_ref letter_id="A"/>
730 </site>
731 <right_flank>TCATTCTGAG</right_flank>
732 </contributing_site>
733 <contributing_site sequence_id="sequence_14" position="19" strand="none" pvalue="2.03e-05" >
734 <left_flank>CACCAGCAAG</left_flank>
735 <site>
736 <letter_ref letter_id="G"/>
737 <letter_ref letter_id="A"/>
738 <letter_ref letter_id="T"/>
739 <letter_ref letter_id="A"/>
740 <letter_ref letter_id="T"/>
741 <letter_ref letter_id="A"/>
742 <letter_ref letter_id="T"/>
743 <letter_ref letter_id="A"/>
744 <letter_ref letter_id="A"/>
745 <letter_ref letter_id="A"/>
746 <letter_ref letter_id="A"/>
747 </site>
748 <right_flank>GCTCAGGAGT</right_flank>
749 </contributing_site>
750 <contributing_site sequence_id="sequence_4" position="12" strand="none" pvalue="3.06e-05" >
751 <left_flank>CAGGTCTAAG</left_flank>
752 <site>
753 <letter_ref letter_id="A"/>
754 <letter_ref letter_id="G"/>
755 <letter_ref letter_id="C"/>
756 <letter_ref letter_id="A"/>
757 <letter_ref letter_id="T"/>
758 <letter_ref letter_id="A"/>
759 <letter_ref letter_id="T"/>
760 <letter_ref letter_id="A"/>
761 <letter_ref letter_id="T"/>
762 <letter_ref letter_id="A"/>
763 <letter_ref letter_id="A"/>
764 </site>
765 <right_flank>CTTGGAGTCC</right_flank>
766 </contributing_site>
767 <contributing_site sequence_id="sequence_0" position="39" strand="none" pvalue="3.06e-05" >
768 <left_flank>CCTCGGGACG</left_flank>
769 <site>
770 <letter_ref letter_id="T"/>
771 <letter_ref letter_id="G"/>
772 <letter_ref letter_id="G"/>
773 <letter_ref letter_id="G"/>
774 <letter_ref letter_id="T"/>
775 <letter_ref letter_id="A"/>
776 <letter_ref letter_id="T"/>
777 <letter_ref letter_id="A"/>
778 <letter_ref letter_id="T"/>
779 <letter_ref letter_id="A"/>
780 <letter_ref letter_id="A"/>
781 </site>
782 <right_flank></right_flank>
783 </contributing_site>
784 <contributing_site sequence_id="sequence_18" position="37" strand="none" pvalue="3.82e-05" >
785 <left_flank>CGTGGTCGCG</left_flank>
786 <site>
787 <letter_ref letter_id="G"/>
788 <letter_ref letter_id="G"/>
789 <letter_ref letter_id="G"/>
790 <letter_ref letter_id="G"/>
791 <letter_ref letter_id="T"/>
792 <letter_ref letter_id="A"/>
793 <letter_ref letter_id="T"/>
794 <letter_ref letter_id="A"/>
795 <letter_ref letter_id="A"/>
796 <letter_ref letter_id="C"/>
797 <letter_ref letter_id="A"/>
798 </site>
799 <right_flank>GC</right_flank>
800 </contributing_site>
801 <contributing_site sequence_id="sequence_5" position="0" strand="none" pvalue="3.82e-05" >
802 <left_flank></left_flank>
803 <site>
804 <letter_ref letter_id="A"/>
805 <letter_ref letter_id="A"/>
806 <letter_ref letter_id="C"/>
807 <letter_ref letter_id="G"/>
808 <letter_ref letter_id="T"/>
809 <letter_ref letter_id="A"/>
810 <letter_ref letter_id="T"/>
811 <letter_ref letter_id="A"/>
812 <letter_ref letter_id="T"/>
813 <letter_ref letter_id="A"/>
814 <letter_ref letter_id="A"/>
815 </site>
816 <right_flank>ATGGTCCTGT</right_flank>
817 </contributing_site>
818 <contributing_site sequence_id="sequence_29" position="30" strand="none" pvalue="4.02e-05" >
819 <left_flank>GCTGCCGGTG</left_flank>
820 <site>
821 <letter_ref letter_id="A"/>
822 <letter_ref letter_id="G"/>
823 <letter_ref letter_id="C"/>
824 <letter_ref letter_id="G"/>
825 <letter_ref letter_id="T"/>
826 <letter_ref letter_id="A"/>
827 <letter_ref letter_id="T"/>
828 <letter_ref letter_id="A"/>
829 <letter_ref letter_id="A"/>
830 <letter_ref letter_id="A"/>
831 <letter_ref letter_id="G"/>
832 </site>
833 <right_flank>GCCCTGGCG</right_flank>
834 </contributing_site>
835 <contributing_site sequence_id="sequence_1" position="27" strand="none" pvalue="5.52e-05" >
836 <left_flank>AGTCACAAGT</left_flank>
837 <site>
838 <letter_ref letter_id="G"/>
839 <letter_ref letter_id="A"/>
840 <letter_ref letter_id="G"/>
841 <letter_ref letter_id="T"/>
842 <letter_ref letter_id="T"/>
843 <letter_ref letter_id="A"/>
844 <letter_ref letter_id="T"/>
845 <letter_ref letter_id="A"/>
846 <letter_ref letter_id="A"/>
847 <letter_ref letter_id="A"/>
848 <letter_ref letter_id="A"/>
849 </site>
850 <right_flank>GGGTCGCACG</right_flank>
851 </contributing_site>
852 <contributing_site sequence_id="sequence_3" position="14" strand="none" pvalue="5.94e-05" >
853 <left_flank>CCCAGGTTTC</left_flank>
854 <site>
855 <letter_ref letter_id="T"/>
856 <letter_ref letter_id="G"/>
857 <letter_ref letter_id="A"/>
858 <letter_ref letter_id="G"/>
859 <letter_ref letter_id="T"/>
860 <letter_ref letter_id="A"/>
861 <letter_ref letter_id="T"/>
862 <letter_ref letter_id="A"/>
863 <letter_ref letter_id="T"/>
864 <letter_ref letter_id="A"/>
865 <letter_ref letter_id="A"/>
866 </site>
867 <right_flank>TCGCCGCACC</right_flank>
868 </contributing_site>
869 <contributing_site sequence_id="sequence_16" position="22" strand="none" pvalue="6.78e-05" >
870 <left_flank>AGTTTCAGTT</left_flank>
871 <site>
872 <letter_ref letter_id="G"/>
873 <letter_ref letter_id="G"/>
874 <letter_ref letter_id="C"/>
875 <letter_ref letter_id="A"/>
876 <letter_ref letter_id="T"/>
877 <letter_ref letter_id="C"/>
878 <letter_ref letter_id="T"/>
879 <letter_ref letter_id="A"/>
880 <letter_ref letter_id="A"/>
881 <letter_ref letter_id="A"/>
882 <letter_ref letter_id="A"/>
883 </site>
884 <right_flank>attatataac</right_flank>
885 </contributing_site>
886 <contributing_site sequence_id="sequence_7" position="2" strand="none" pvalue="2.08e-04" >
887 <left_flank>TC</left_flank>
888 <site>
889 <letter_ref letter_id="A"/>
890 <letter_ref letter_id="G"/>
891 <letter_ref letter_id="A"/>
892 <letter_ref letter_id="G"/>
893 <letter_ref letter_id="T"/>
894 <letter_ref letter_id="A"/>
895 <letter_ref letter_id="T"/>
896 <letter_ref letter_id="A"/>
897 <letter_ref letter_id="T"/>
898 <letter_ref letter_id="A"/>
899 <letter_ref letter_id="T"/>
900 </site>
901 <right_flank>AAATGTTCCT</right_flank>
902 </contributing_site>
903 <contributing_site sequence_id="sequence_8" position="13" strand="none" pvalue="4.05e-04" >
904 <left_flank>TATAACTCAG</left_flank>
905 <site>
906 <letter_ref letter_id="G"/>
907 <letter_ref letter_id="T"/>
908 <letter_ref letter_id="T"/>
909 <letter_ref letter_id="G"/>
910 <letter_ref letter_id="G"/>
911 <letter_ref letter_id="A"/>
912 <letter_ref letter_id="T"/>
913 <letter_ref letter_id="A"/>
914 <letter_ref letter_id="A"/>
915 <letter_ref letter_id="A"/>
916 <letter_ref letter_id="A"/>
917 </site>
918 <right_flank>TAATTTGTAC</right_flank>
919 </contributing_site>
920 </contributing_sites>
921 </motif>
1 </motifs> 922 </motifs>
2 <scanned_sites_summary p_thresh="0.0001"> 923 <scanned_sites_summary p_thresh="0.0001">
3 <scanned_sites sequence_id="sequence_0" pvalue="1.22e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="39" pvalue="3.06e-05"/> 924 <scanned_sites sequence_id="sequence_0" pvalue="1.22e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="39" pvalue="3.06e-05"/>
4 </scanned_sites> 925 </scanned_sites>
5 <scanned_sites sequence_id="sequence_1" pvalue="2.21e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="27" pvalue="5.52e-05"/> 926 <scanned_sites sequence_id="sequence_1" pvalue="2.21e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="none" position="27" pvalue="5.52e-05"/>