Mercurial > repos > iuc > meme_psp_gen
annotate test-data/fimo_output_test3.html @ 6:5f95d385a33c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
author | iuc |
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date | Sat, 09 Apr 2022 08:33:29 +0000 |
parents | ff2f53a32d0e |
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rev | line source |
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6
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
1 <td style="padding-right: 2em">background file name = --uniform--</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
2 <td style="padding-left: 5em; padding-right: 2em">alphabet = DNA</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
3 <td style="padding-left: 5em; padding-right: 2em">max stored scores = 100000</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
4 </tr> <tr> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
5 <td style="padding-right: 2em">allow clobber = false</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
6 <td style="padding-left: 5em; padding-right: 2em">compute q-values = true</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
7 <td style="padding-left: 5em; padding-right: 2em">parse genomic coord. = false</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
8 </tr> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
9 <tr> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
10 <td style="padding-right: 2em">text only = false</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
11 <td style="padding-left: 5em; padding-right: 2em">scan both strands = true</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
12 <td style="padding-left: 5em; padding-right: 2em">max strand = false</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
13 </tr> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
14 <tr> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
15 <td style="padding-right: 2em">threshold type = p-value</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
16 <td style="padding-left: 5em; padding-right: 2em">output theshold = 0.01</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
17 <td style="padding-left: 5em; padding-right: 2em">pseudocount = 0.1</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
18 </tr> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
19 <tr> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
20 <td style="padding-right: 2em">alpha = 1</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
21 <td style="padding-left: 5em; padding-right: 2em">verbosity = 2</td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
22 <td style="padding-left: 5em; padding-right: 2em"></td> |
5f95d385a33c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents:
3
diff
changeset
|
23 </tr> |