annotate test-data/dreme1.xml @ 1:793225b11202 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa

<dreme version="4.12.0" release="Tue Jun 27 16:22:50 2017 -0700">
  <model>
    <command_line>dreme -oc dreme_out -rna -norc -p dreme_test_sites.fa -e 0</command_line>
    <positives name="dreme test sites" count="1000" file="dreme_test_sites.fa" last_mod_date="Thu Apr 19 19:09:45 CEST 2018" />
    <negatives name="shuffled positive sequences" count="1000" from="shuffled"/>
    <alphabet name="RNA" like="rna">
      <letter id="A" symbol="A" name="Adenine" colour="CC0000"/>
      <letter id="C" symbol="C" name="Cytosine" colour="0000CC"/>
      <letter id="G" symbol="G" name="Guanine" colour="FFB300"/>
      <letter id="U" symbol="U" aliases="T" name="Uracil" colour="008000"/>
      <letter id="N" symbol="N" aliases="X." equals="ACGU" name="Any base"/>
      <letter id="V" symbol="V" equals="ACG" name="Not U"/>
      <letter id="H" symbol="H" equals="ACU" name="Not G"/>
      <letter id="D" symbol="D" equals="AGU" name="Not C"/>
      <letter id="B" symbol="B" equals="CGU" name="Not A"/>
      <letter id="M" symbol="M" equals="AC" name="Amino"/>
      <letter id="R" symbol="R" equals="AG" name="Purine"/>
      <letter id="W" symbol="W" equals="AU" name="Weak"/>
      <letter id="S" symbol="S" equals="CG" name="Strong"/>
      <letter id="Y" symbol="Y" equals="CU" name="Pyrimidine"/>
      <letter id="K" symbol="K" equals="GU" name="Keto"/>
    </alphabet>
    <strands>none</strands>
    <background A="0.221" C="0.245" G="0.221" U="0.312" from="dataset"/>
    <stop evalue="0"/>
    <ngen>100</ngen>
    <add_pv_thresh>0.01</add_pv_thresh>
    <seed>1</seed>
    <host>ThinkPad-T450s</host>
    <when>Thu Apr 19 19:40:08 CEST 2018</when>
  </model>
  <motifs>