Mercurial > repos > iuc > mg_toolkit_original_metadata

diff test-data/functional_analysis/MGYS00006583_metadata.tsv @ 1:b613e5dd5e83 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/mg_toolkit commit df500c27a6ef0ea25e0361feada7df8dedee98f1
author iuc
date Tue, 30 Jul 2024 15:41:16 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/functional_analysis/MGYS00006583_metadata.tsv	Tue Jul 30 15:41:16 2024 +0000
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+analysis_id	name	group_type	description	download_url	pipeline_version	experiment_type
+MGYA00722210	ERZ21819995_Archaea_SRP.RF01857.fasta.gz	non-coding RNAs	Predicted Archaea SRP RNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Archaea_SRP.RF01857.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA.fasta.gz	Sequence data	Processed contigs	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_GO.csv	Functional analysis	Complete GO annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_GO.csv	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_GO_slim.csv	Functional analysis	GO slim annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_GO_slim.csv	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_InterPro.csv	Functional analysis	InterPro summary	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_InterPro.csv	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_InterPro.tsv.gz	Functional analysis	InterPro matches	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_InterPro.tsv.gz	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_LSU.fasta.gz	Taxonomic analysis LSU rRNA	Contigs encoding LSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_LSU.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_LSU_MAPSeq.mseq.gz	Taxonomic analysis LSU rRNA	MAPseq LSU assignments	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_LSU_MAPSeq.mseq.gz	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_LSU_OTU.tsv	Taxonomic analysis LSU rRNA	OTUs, counts and taxonomic assignments for LSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_LSU_OTU.tsv	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_LSU_OTU_TABLE_HDF5.biom	Taxonomic analysis LSU rRNA	OTUs, counts and taxonomic assignments for LSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_LSU_OTU_TABLE_HDF5.biom	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_LSU_OTU_TABLE_JSON.biom	Taxonomic analysis LSU rRNA	OTUs, counts and taxonomic assignments for LSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_LSU_OTU_TABLE_JSON.biom	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_SSU.fasta.gz	Taxonomic analysis SSU rRNA	Contigs encoding SSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_SSU.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_SSU_MAPSeq.mseq.gz	Taxonomic analysis SSU rRNA	MAPseq SSU assignments	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_SSU_MAPSeq.mseq.gz	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_SSU_OTU.tsv	Taxonomic analysis SSU rRNA	OTUs, counts and taxonomic assignments for SSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_SSU_OTU.tsv	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_SSU_OTU_TABLE_HDF5.biom	Taxonomic analysis SSU rRNA	OTUs, counts and taxonomic assignments for SSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_SSU_OTU_TABLE_HDF5.biom	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_SSU_OTU_TABLE_JSON.biom	Taxonomic analysis SSU rRNA	OTUs, counts and taxonomic assignments for SSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_SSU_OTU_TABLE_JSON.biom	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_annotations.gff.bgz	Functional analysis	Combined (eggNOG, InterPro, antiSMASH) annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_annotations.gff.bgz	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_diamond.tsv.gz	Functional analysis	Diamond annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_diamond.tsv.gz	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_emapper.annotations.tsv.gz	Functional analysis	eggNOG annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_emapper.annotations.tsv.gz	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_emapper.seed_orthologs.tsv.gz	Functional analysis	eggNOG seed orthologs	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_emapper.seed_orthologs.tsv.gz	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_ko.tsv	Functional analysis	KEGG orthologues annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_ko.tsv	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_pfam.tsv	Functional analysis	Pfam annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_pfam.tsv	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_predicted_cds.faa.gz	Sequence data	Predicted CDS (aa)	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_predicted_cds.faa.gz	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_predicted_orf.ffn.gz	Sequence data	Predicted ORF (nt)	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_predicted_orf.ffn.gz	5.0	assembly
+MGYA00722210	ERZ21819995_alpha_tmRNA.RF01849.fasta.gz	non-coding RNAs	Predicted alpha tmRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_alpha_tmRNA.RF01849.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_Bacteria_large_SRP.RF01854.fasta.gz	non-coding RNAs	Predicted Bacteria large SRP RNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Bacteria_large_SRP.RF01854.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_Bacteria_small_SRP.RF00169.fasta.gz	non-coding RNAs	Predicted Bacteria small SRP RNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Bacteria_small_SRP.RF00169.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_antismash.embl.gz	Pathways and Systems	antiSMASH annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_antismash.embl.gz	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_antismash.gbk.gz	Pathways and Systems	antiSMASH annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_antismash.gbk.gz	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_antismash.gff.bgz	Pathways and Systems	antiSMASH annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_antismash.gff.bgz	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_antismash_summary.csv	Pathways and Systems	antiSMASH summary	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_antismash_summary.csv	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_gp.csv	Pathways and Systems	Genome Properties annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_gp.csv	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_kegg_pathways.csv	Pathways and Systems	KEGG pathway annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_kegg_pathways.csv	5.0	assembly
+MGYA00722210	ERZ21819995_FASTA_kegg_pathways_contigs.tsv	Pathways and Systems	KEGG pathway annotation (contig)	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_kegg_pathways_contigs.tsv	5.0	assembly
+MGYA00722210	ERZ21819995_Fungi_SRP.RF01502.fasta.gz	non-coding RNAs	Predicted Fungi SRP RNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Fungi_SRP.RF01502.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_Metazoa_SRP.RF00017.fasta.gz	non-coding RNAs	Predicted Metazoa SRP RNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Metazoa_SRP.RF00017.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_Plant_SRP.RF01855.fasta.gz	non-coding RNAs	Predicted Plant SRP RNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Plant_SRP.RF01855.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_Protozoa_SRP.RF01856.fasta.gz	non-coding RNAs	Predicted Protozoa SRP RNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Protozoa_SRP.RF01856.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_RNaseP_arch.RF00373.fasta.gz	non-coding RNAs	Predicted Archaeal RNase P RNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_RNaseP_arch.RF00373.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_RNaseP_bact_a.RF00010.fasta.gz	non-coding RNAs	Predicted Bacterial RNase P class A RNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_RNaseP_bact_a.RF00010.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_RNaseP_bact_b.RF00011.fasta.gz	non-coding RNAs	Predicted Bacterial RNase P class B RNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_RNaseP_bact_b.RF00011.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_RNase_MRP.RF00030.fasta.gz	non-coding RNAs	Predicted RNase MRP RNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_RNase_MRP.RF00030.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_RNase_P.RF01577.fasta.gz	non-coding RNAs	Predicted Plasmodium RNase P	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_RNase_P.RF01577.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_beta_tmRNA.RF01850.fasta.gz	non-coding RNAs	Predicted beta tmRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_beta_tmRNA.RF01850.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_cyano_tmRNA.RF01851.fasta.gz	non-coding RNAs	Predicted cyano tmRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_cyano_tmRNA.RF01851.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_mt-tmRNA.RF02544.fasta.gz	non-coding RNAs	Predicted mt-tmRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_mt-tmRNA.RF02544.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_tRNA-Sec.RF01852.fasta.gz	non-coding RNAs	Predicted tRNA-Sec	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_tRNA-Sec.RF01852.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_tRNA.RF00005.fasta.gz	non-coding RNAs	Predicted tRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_tRNA.RF00005.fasta.gz	5.0	assembly
+MGYA00722210	ERZ21819995_tmRNA.RF00023.fasta.gz	non-coding RNAs	Predicted tmRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_tmRNA.RF00023.fasta.gz	5.0	assembly