Mercurial > repos > iuc > mg_toolkit_original_metadata
changeset 1:b613e5dd5e83 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/mg_toolkit commit df500c27a6ef0ea25e0361feada7df8dedee98f1
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--- a/macros.xml Tue Jul 16 09:23:54 2024 +0000 +++ b/macros.xml Tue Jul 30 15:41:16 2024 +0000 @@ -16,6 +16,126 @@ <person givenName="Rand" familyName="Zoabi" url="https://github.com/RZ9082" /> </creator> </xml> + <xml name="all_versions_result_group"> + <option value="statistics">Statistics</option> + <option value="sequence_data">Sequence data</option> + <option value="functional_analysis">Functional analysis</option> + </xml> + <xml name="v1.0-v3.0_result_group"> + <option value="taxonomic_analysis">Taxonomic analysis</option> + </xml> + <xml name="v4.0-v5.0_result_group"> + <option value="taxonomic_analysis_ssu_rrna">Taxonomic analysis SSU</option> + <option value="taxonomic_analysis_lsu_rrna">Taxonomic analysis LSU</option> + <option value="non-coding_rnas">Non-coding RNAs</option> + </xml> + <xml name="v5.0_result_group"> + <option value="taxonomic_analysis_itsonedb">Taxonomic analysis ITSoneDB</option> + <option value="taxonomic_analysis_unite">Taxonomic analysis ITS UNITE</option> + <option value="taxonomic_analysis_motu">Taxonomic analysis mOTU</option> + <option value="pathways_and_systems">Pathways and systems</option> + </xml> + <xml name="file_type_statistics"> + <param name="file_type" type="select" label="File type" multiple="true" optional="false"> + <option value="taxa_abundance_distribution">Taxa abundance distribution</option> + </param> + </xml> + <xml name="file_type_sequence_data"> + <param name="file_type" type="select" label="File type" multiple="true" optional="false"> + <option value="processed_contigs_nucleotide_reads">Processed contigs/nucleotide reads</option> + <option value="processed_contigs_reads_with_annotation">Processed contigs/reads with annotation</option> + <option value="processed_contigs_reads_without_annotation">Processed contigs/reads without annotation</option> + <option value="processed_contigs_reads_with_pcds">Processed contigs/reads with pCDS</option> + <option value="predicted_cds">Predicted CDS (aa)</option> + <option value="predicted_cds_with_annotation">Predicted CDS with annotation</option> + <option value="predicted_cds_without_annotation">Predicted CDS without annotation</option> + <option value="predicted_orf">Predicted ORF (nt)</option> + <option value="predicted_orf_with_annotation">Predicted ORF with annotation</option> + <option value="predicted_orf_without_annotation">Predicted ORF without annotation</option> + </param> + </xml> + <xml name="file_type_functional_analysis"> + <param name="file_type" type="select" label="File type" multiple="true" optional="false"> + <option value="complete_go_annotation">Complete GO annotation</option> + <option value="go_slim_annotation">GO slim annotation</option> + <option value="interpro_summary">InterPro summary</option> + <option value="interpro_matches">InterPro matches</option> + <option value="kegg_orthologues_annotation">KEGG orthologues annotation</option> + <option value="pfam_annotation">Pfam annotation</option> + <option value="combined_annotation">Combined (eggNOG, InterPro, antiSMASH) annotation</option> + <option value="diamond_annotation">Diamond annotation</option> + <option value="eggnog_annotation">eggNOG annotation</option> + <option value="eggnog_seed_orthologs">eggNOG seed orthologs</option> + </param> + </xml> + <xml name="file_type_taxonomic_analysis_ssu_rrna"> + <param name="file_type" type="select" label="File type" multiple="true" optional="false"> + <option value="reads_contigs_encoding_ssu">Reads/Contigs encoding SSU rRNA</option> + <option value="mapseq_ssu_assignments">MAPseq SSU assignments</option> + <option value="ssu_otu_tables">SSU OTU tables</option> + <option value="ssu_hdf5_biom">SSU HDF5 BIOM files</option> + <option value="ssu_json_biom">SSU JSON BIOM files</option> + </param> + </xml> + <xml name="file_type_taxonomic_analysis_lsu_rrna"> + <param name="file_type" type="select" label="File type" multiple="true" optional="false"> + <option value="reads_contigs_encoding_lsu">Reads/Contigs encoding LSU rRNA</option> + <option value="mapseq_lsu_assignments">MAPseq LSU assignments</option> + <option value="lsu_otu_tables">LSU OTU tables</option> + <option value="lsu_hdf5_biom">LSU HDF5 BIOM files</option> + <option value="lsu_json_biom">LSU JSON BIOM files</option> + </param> + </xml> + <xml name="file_type_non-coding_rnas"> + <param name="file_type" type="select" label="File type" multiple="true" optional="false"> + <option value="predicted_non_coding_rnas">Predicted non-coding RNAs</option> + </param> + </xml> + <xml name="file_type_taxonomic_analysis_itsonedb"> + <param name="file_type" type="select" label="File type" multiple="true" optional="false"> + <option value="mapseq_itsonedb_assignments">MAPseq ITSoneDB assignments</option> + <option value="itsonedb_otu_tables">ITSoneDB OTU tables</option> + <option value="itsonedb_hdf5_biom">ITSoneDB HDF5 BIOM files</option> + <option value="itsonedb_json_biom">ITSoneDB JSON BIOM files</option> + </param> + </xml> + <xml name="file_type_taxonomic_analysis_unite"> + <param name="file_type" type="select" label="File type" multiple="true" optional="false"> + <option value="mapseq_unite_assignments">MAPseq UNITE assignments</option> + <option value="unite_otu_tables">UNITE OTU tables</option> + <option value="unite_hdf5_biom">UNITE HDF5 BIOM files</option> + <option value="unite_json_biom">UNITE JSON BIOM files</option> + </param> + </xml> + <xml name="file_type_taxonomic_analysis_motu"> + <param name="file_type" type="select" label="File type" multiple="true" optional="false"> + <option value="motus_taxonomic_profile">mOTUs taxonomic profile</option> + </param> + </xml> + <xml name="file_type_pathways_and_systems"> + <param name="file_type" type="select" label="File type" multiple="true" optional="false"> + <option value="antismash_annotation_gff3">antiSMASH annotation (gff3)</option> + <option value="antismash_annotation_embl">antiSMASH annotation(embl)</option> + <option value="antismash_annotation_genbank">antiSMASH annotation(genbank)</option> + <option value="antismash_summary">antiSMASH summary</option> + <option value="genome_properties_annotation">Genome properties annotation</option> + <option value="kegg_pathway_annotation">KEGG pathway annotation</option> + <option value="kegg_pathway_annotation_contig">KEGG pathway annotation (contig)</option> + </param> + </xml> + <xml name="file_type_taxonomic_analysis"> + <param name="file_type" type="select" label="File type" multiple="true" optional="false"> + <option value="phylogenetic_tree"></option> + <option value="otus_counts_and_taxonomic_assignments_tsv">OTUs, counts and taxonomic assignments (table)</option> + <option value="otus_counts_and_taxonomic_assignments_biom1">OTUs, counts and taxonomic assignments (JSON)</option> + <option value="otus_counts_and_taxonomic_assignments_biom2">OTUs, counts and taxonomic assignments (HDF5)</option> + <option value="reads_encoding_5s_rrna">Reads enconding 5S rRNA</option> + <option value="reads_encoding_16s_rrna">Reads enconding 16S rRNA</option> + <option value="reads_encoding_23s_rrna">Reads enconding 23S rRNA</option> + </param> + </xml> + <xml name="file_type_taxonomic_analysis_its"> + </xml> <xml name="citations"> <citations> <citation type="bibtex">
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/functional_analysis/MGYS00006583_metadata.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,50 @@ +analysis_id name group_type description download_url pipeline_version experiment_type +MGYA00722210 ERZ21819995_Archaea_SRP.RF01857.fasta.gz non-coding RNAs Predicted Archaea SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Archaea_SRP.RF01857.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA.fasta.gz Sequence data Processed contigs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_GO.csv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_GO_slim.csv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_InterPro.csv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_InterPro.tsv.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_LSU.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_LSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_LSU_OTU.tsv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_LSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_LSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_SSU.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_SSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_SSU_OTU.tsv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_SSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_SSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_annotations.gff.bgz Functional analysis Combined (eggNOG, InterPro, antiSMASH) annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_annotations.gff.bgz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_diamond.tsv.gz Functional analysis Diamond annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_diamond.tsv.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_emapper.annotations.tsv.gz Functional analysis eggNOG annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_emapper.annotations.tsv.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_emapper.seed_orthologs.tsv.gz Functional analysis eggNOG seed orthologs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_emapper.seed_orthologs.tsv.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_ko.tsv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_pfam.tsv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_predicted_cds.faa.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_predicted_orf.ffn.gz 5.0 assembly +MGYA00722210 ERZ21819995_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_alpha_tmRNA.RF01849.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Bacteria_large_SRP.RF01854.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Bacteria_small_SRP.RF00169.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_antismash.embl.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_antismash.embl.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_antismash.gbk.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_antismash.gbk.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_antismash.gff.bgz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_antismash.gff.bgz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_antismash_summary.csv Pathways and Systems antiSMASH summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_antismash_summary.csv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_gp.csv Pathways and Systems Genome Properties annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_gp.csv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_kegg_pathways.csv Pathways and Systems KEGG pathway annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_kegg_pathways.csv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_kegg_pathways_contigs.tsv Pathways and Systems KEGG pathway annotation (contig) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_kegg_pathways_contigs.tsv 5.0 assembly +MGYA00722210 ERZ21819995_Fungi_SRP.RF01502.fasta.gz non-coding RNAs Predicted Fungi SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Fungi_SRP.RF01502.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_Metazoa_SRP.RF00017.fasta.gz non-coding RNAs Predicted Metazoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Metazoa_SRP.RF00017.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_Plant_SRP.RF01855.fasta.gz non-coding RNAs Predicted Plant SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Plant_SRP.RF01855.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_Protozoa_SRP.RF01856.fasta.gz non-coding RNAs Predicted Protozoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Protozoa_SRP.RF01856.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_RNaseP_arch.RF00373.fasta.gz non-coding RNAs Predicted Archaeal RNase P RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_RNaseP_arch.RF00373.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_RNaseP_bact_a.RF00010.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_RNaseP_bact_b.RF00011.fasta.gz non-coding RNAs Predicted Bacterial RNase P class B RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_RNaseP_bact_b.RF00011.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_RNase_MRP.RF00030.fasta.gz non-coding RNAs Predicted RNase MRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_RNase_MRP.RF00030.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_RNase_P.RF01577.fasta.gz non-coding RNAs Predicted Plasmodium RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_RNase_P.RF01577.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_beta_tmRNA.RF01850.fasta.gz non-coding RNAs Predicted beta tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_beta_tmRNA.RF01850.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_cyano_tmRNA.RF01851.fasta.gz non-coding RNAs Predicted cyano tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_cyano_tmRNA.RF01851.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_mt-tmRNA.RF02544.fasta.gz non-coding RNAs Predicted mt-tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_mt-tmRNA.RF02544.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_tRNA-Sec.RF01852.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_tRNA.RF00005.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_tmRNA.RF00023.fasta.gz 5.0 assembly
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/non-coding_rnas/MGYS00000856_metadata.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,128 @@ +analysis_id name group_type description download_url pipeline_version experiment_type +MGYA00522964 SRR1143324_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00522964/file/SRR1143324_FASTQ.fasta.gz 5.0 amplicon +MGYA00522964 SRR1143324_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00522964/file/SRR1143324_FASTQ_SSU.fasta.gz 5.0 amplicon +MGYA00522964 SRR1143324_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00522964/file/SRR1143324_FASTQ_SSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00522964 SRR1143324_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00522964/file/SRR1143324_FASTQ_SSU_OTU.tsv 5.0 amplicon +MGYA00522964 SRR1143324_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00522964/file/SRR1143324_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00522964 SRR1143324_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00522964/file/SRR1143324_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00523065 SRR1145433_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523065/file/SRR1145433_FASTQ.fasta.gz 5.0 amplicon +MGYA00523065 SRR1145433_FASTQ_5.8S.fasta.gz non-coding RNAs Reads encoding 5.8S https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523065/file/SRR1145433_FASTQ_5.8S.fasta.gz 5.0 amplicon +MGYA00523065 SRR1145433_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Reads encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523065/file/SRR1145433_FASTQ_LSU.fasta.gz 5.0 amplicon +MGYA00523065 SRR1145433_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523065/file/SRR1145433_FASTQ_LSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00523065 SRR1145433_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523065/file/SRR1145433_FASTQ_LSU_OTU.tsv 5.0 amplicon +MGYA00523065 SRR1145433_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523065/file/SRR1145433_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00523065 SRR1145433_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523065/file/SRR1145433_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00523066 SRR1143350_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523066/file/SRR1143350_FASTQ.fasta.gz 5.0 amplicon +MGYA00523066 SRR1143350_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523066/file/SRR1143350_FASTQ_SSU.fasta.gz 5.0 amplicon +MGYA00523066 SRR1143350_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523066/file/SRR1143350_FASTQ_SSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00523066 SRR1143350_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523066/file/SRR1143350_FASTQ_SSU_OTU.tsv 5.0 amplicon +MGYA00523066 SRR1143350_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523066/file/SRR1143350_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00523066 SRR1143350_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523066/file/SRR1143350_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00523553 SRR1145437_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523553/file/SRR1145437_FASTQ.fasta.gz 5.0 amplicon +MGYA00523553 SRR1145437_FASTQ_5.8S.fasta.gz non-coding RNAs Reads encoding 5.8S https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523553/file/SRR1145437_FASTQ_5.8S.fasta.gz 5.0 amplicon +MGYA00523553 SRR1145437_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Reads encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523553/file/SRR1145437_FASTQ_LSU.fasta.gz 5.0 amplicon +MGYA00523553 SRR1145437_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523553/file/SRR1145437_FASTQ_LSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00523553 SRR1145437_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523553/file/SRR1145437_FASTQ_LSU_OTU.tsv 5.0 amplicon +MGYA00523553 SRR1145437_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523553/file/SRR1145437_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00523553 SRR1145437_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523553/file/SRR1145437_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00523554 SRR1145434_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523554/file/SRR1145434_FASTQ.fasta.gz 5.0 amplicon +MGYA00523554 SRR1145434_FASTQ_5.8S.fasta.gz non-coding RNAs Reads encoding 5.8S https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523554/file/SRR1145434_FASTQ_5.8S.fasta.gz 5.0 amplicon +MGYA00523554 SRR1145434_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Reads encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523554/file/SRR1145434_FASTQ_LSU.fasta.gz 5.0 amplicon +MGYA00523554 SRR1145434_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523554/file/SRR1145434_FASTQ_LSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00523554 SRR1145434_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523554/file/SRR1145434_FASTQ_LSU_OTU.tsv 5.0 amplicon +MGYA00523554 SRR1145434_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523554/file/SRR1145434_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00523554 SRR1145434_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523554/file/SRR1145434_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00523555 SRR1145427_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523555/file/SRR1145427_FASTQ.fasta.gz 5.0 amplicon +MGYA00523555 SRR1145427_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523555/file/SRR1145427_FASTQ_SSU.fasta.gz 5.0 amplicon +MGYA00523555 SRR1145427_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523555/file/SRR1145427_FASTQ_SSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00523555 SRR1145427_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523555/file/SRR1145427_FASTQ_SSU_OTU.tsv 5.0 amplicon +MGYA00523555 SRR1145427_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523555/file/SRR1145427_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00523555 SRR1145427_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00523555/file/SRR1145427_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00524159 SRR1145429_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524159/file/SRR1145429_FASTQ.fasta.gz 5.0 amplicon +MGYA00524159 SRR1145429_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524159/file/SRR1145429_FASTQ_SSU.fasta.gz 5.0 amplicon +MGYA00524159 SRR1145429_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524159/file/SRR1145429_FASTQ_SSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00524159 SRR1145429_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524159/file/SRR1145429_FASTQ_SSU_OTU.tsv 5.0 amplicon +MGYA00524159 SRR1145429_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524159/file/SRR1145429_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00524159 SRR1145429_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524159/file/SRR1145429_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00524403 SRR1141249_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524403/file/SRR1141249_FASTQ.fasta.gz 5.0 amplicon +MGYA00524403 SRR1141249_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524403/file/SRR1141249_FASTQ_SSU.fasta.gz 5.0 amplicon +MGYA00524403 SRR1141249_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524403/file/SRR1141249_FASTQ_SSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00524403 SRR1141249_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524403/file/SRR1141249_FASTQ_SSU_OTU.tsv 5.0 amplicon +MGYA00524403 SRR1141249_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524403/file/SRR1141249_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00524403 SRR1141249_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524403/file/SRR1141249_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00524908 SRR1145436_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524908/file/SRR1145436_FASTQ.fasta.gz 5.0 amplicon +MGYA00524908 SRR1145436_FASTQ_5.8S.fasta.gz non-coding RNAs Reads encoding 5.8S https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524908/file/SRR1145436_FASTQ_5.8S.fasta.gz 5.0 amplicon +MGYA00524908 SRR1145436_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Reads encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524908/file/SRR1145436_FASTQ_LSU.fasta.gz 5.0 amplicon +MGYA00524908 SRR1145436_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524908/file/SRR1145436_FASTQ_LSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00524908 SRR1145436_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524908/file/SRR1145436_FASTQ_LSU_OTU.tsv 5.0 amplicon +MGYA00524908 SRR1145436_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524908/file/SRR1145436_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00524908 SRR1145436_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524908/file/SRR1145436_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00525007 SRR1145439_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525007/file/SRR1145439_FASTQ.fasta.gz 5.0 amplicon +MGYA00525007 SRR1145439_FASTQ_5.8S.fasta.gz non-coding RNAs Reads encoding 5.8S https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525007/file/SRR1145439_FASTQ_5.8S.fasta.gz 5.0 amplicon +MGYA00525007 SRR1145439_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Reads encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525007/file/SRR1145439_FASTQ_LSU.fasta.gz 5.0 amplicon +MGYA00525007 SRR1145439_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525007/file/SRR1145439_FASTQ_LSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00525007 SRR1145439_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525007/file/SRR1145439_FASTQ_LSU_OTU.tsv 5.0 amplicon +MGYA00525007 SRR1145439_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525007/file/SRR1145439_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00525007 SRR1145439_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525007/file/SRR1145439_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00525008 SRR1145431_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525008/file/SRR1145431_FASTQ.fasta.gz 5.0 amplicon +MGYA00525008 SRR1145431_FASTQ_5.8S.fasta.gz non-coding RNAs Reads encoding 5.8S https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525008/file/SRR1145431_FASTQ_5.8S.fasta.gz 5.0 amplicon +MGYA00525008 SRR1145431_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Reads encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525008/file/SRR1145431_FASTQ_LSU.fasta.gz 5.0 amplicon +MGYA00525008 SRR1145431_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525008/file/SRR1145431_FASTQ_LSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00525008 SRR1145431_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525008/file/SRR1145431_FASTQ_LSU_OTU.tsv 5.0 amplicon +MGYA00525008 SRR1145431_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525008/file/SRR1145431_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00525008 SRR1145431_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525008/file/SRR1145431_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00525008 SRR1145431_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525008/file/SRR1145431_FASTQ_SSU.fasta.gz 5.0 amplicon +MGYA00525008 SRR1145431_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525008/file/SRR1145431_FASTQ_SSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00525008 SRR1145431_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525008/file/SRR1145431_FASTQ_SSU_OTU.tsv 5.0 amplicon +MGYA00525008 SRR1145431_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525008/file/SRR1145431_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00525008 SRR1145431_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00525008/file/SRR1145431_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00544131 SRR1145438_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544131/file/SRR1145438_FASTQ.fasta.gz 5.0 amplicon +MGYA00544131 SRR1145438_FASTQ_5.8S.fasta.gz non-coding RNAs Reads encoding 5.8S https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544131/file/SRR1145438_FASTQ_5.8S.fasta.gz 5.0 amplicon +MGYA00544131 SRR1145438_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Reads encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544131/file/SRR1145438_FASTQ_LSU.fasta.gz 5.0 amplicon +MGYA00544131 SRR1145438_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544131/file/SRR1145438_FASTQ_LSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00544131 SRR1145438_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544131/file/SRR1145438_FASTQ_LSU_OTU.tsv 5.0 amplicon +MGYA00544131 SRR1145438_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544131/file/SRR1145438_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00544131 SRR1145438_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544131/file/SRR1145438_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00544132 SRR1145435_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544132/file/SRR1145435_FASTQ.fasta.gz 5.0 amplicon +MGYA00544132 SRR1145435_FASTQ_5.8S.fasta.gz non-coding RNAs Reads encoding 5.8S https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544132/file/SRR1145435_FASTQ_5.8S.fasta.gz 5.0 amplicon +MGYA00544132 SRR1145435_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Reads encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544132/file/SRR1145435_FASTQ_LSU.fasta.gz 5.0 amplicon +MGYA00544132 SRR1145435_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544132/file/SRR1145435_FASTQ_LSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00544132 SRR1145435_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544132/file/SRR1145435_FASTQ_LSU_OTU.tsv 5.0 amplicon +MGYA00544132 SRR1145435_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544132/file/SRR1145435_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00544132 SRR1145435_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544132/file/SRR1145435_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00544132 SRR1145435_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544132/file/SRR1145435_FASTQ_SSU.fasta.gz 5.0 amplicon +MGYA00544132 SRR1145435_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544132/file/SRR1145435_FASTQ_SSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00544132 SRR1145435_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544132/file/SRR1145435_FASTQ_SSU_OTU.tsv 5.0 amplicon +MGYA00544132 SRR1145435_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544132/file/SRR1145435_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00544132 SRR1145435_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544132/file/SRR1145435_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00544133 SRR1145432_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544133/file/SRR1145432_FASTQ.fasta.gz 5.0 amplicon +MGYA00544133 SRR1145432_FASTQ_5.8S.fasta.gz non-coding RNAs Reads encoding 5.8S https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544133/file/SRR1145432_FASTQ_5.8S.fasta.gz 5.0 amplicon +MGYA00544133 SRR1145432_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Reads encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544133/file/SRR1145432_FASTQ_LSU.fasta.gz 5.0 amplicon +MGYA00544133 SRR1145432_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544133/file/SRR1145432_FASTQ_LSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00544133 SRR1145432_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544133/file/SRR1145432_FASTQ_LSU_OTU.tsv 5.0 amplicon +MGYA00544133 SRR1145432_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544133/file/SRR1145432_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00544133 SRR1145432_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544133/file/SRR1145432_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00544134 SRR1145430_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544134/file/SRR1145430_FASTQ.fasta.gz 5.0 amplicon +MGYA00544134 SRR1145430_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544134/file/SRR1145430_FASTQ_SSU.fasta.gz 5.0 amplicon +MGYA00544134 SRR1145430_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544134/file/SRR1145430_FASTQ_SSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00544134 SRR1145430_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544134/file/SRR1145430_FASTQ_SSU_OTU.tsv 5.0 amplicon +MGYA00544134 SRR1145430_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544134/file/SRR1145430_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00544134 SRR1145430_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544134/file/SRR1145430_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00544135 SRR1145428_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544135/file/SRR1145428_FASTQ.fasta.gz 5.0 amplicon +MGYA00544135 SRR1145428_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544135/file/SRR1145428_FASTQ_SSU.fasta.gz 5.0 amplicon +MGYA00544135 SRR1145428_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544135/file/SRR1145428_FASTQ_SSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00544135 SRR1145428_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544135/file/SRR1145428_FASTQ_SSU_OTU.tsv 5.0 amplicon +MGYA00544135 SRR1145428_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544135/file/SRR1145428_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00544135 SRR1145428_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544135/file/SRR1145428_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00544136 SRR1143339_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544136/file/SRR1143339_FASTQ.fasta.gz 5.0 amplicon +MGYA00544136 SRR1143339_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544136/file/SRR1143339_FASTQ_SSU.fasta.gz 5.0 amplicon +MGYA00544136 SRR1143339_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544136/file/SRR1143339_FASTQ_SSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00544136 SRR1143339_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544136/file/SRR1143339_FASTQ_SSU_OTU.tsv 5.0 amplicon +MGYA00544136 SRR1143339_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544136/file/SRR1143339_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00544136 SRR1143339_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544136/file/SRR1143339_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00544137 SRR1141250_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544137/file/SRR1141250_FASTQ.fasta.gz 5.0 amplicon +MGYA00544137 SRR1141250_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544137/file/SRR1141250_FASTQ_SSU.fasta.gz 5.0 amplicon +MGYA00544137 SRR1141250_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544137/file/SRR1141250_FASTQ_SSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00544137 SRR1141250_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544137/file/SRR1141250_FASTQ_SSU_OTU.tsv 5.0 amplicon +MGYA00544137 SRR1141250_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544137/file/SRR1141250_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00544137 SRR1141250_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00544137/file/SRR1141250_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 amplicon
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/pathways_and_systems/ERZ21819995_FASTA_antismash_summary.csv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,9 @@ +"11","nrps","Non-ribosomal peptide synthetase cluster" +"6","terpene","Terpene" +"6","arylpolyene","Aryl polyene cluster" +"4","other","Cluster containing a secondary metabolite-related protein that does not fit into any other category" +"3","bacteriocin","Bacteriocin or other unspecified ribosomally synthesised and post-translationally modified peptide product (RiPP) cluster" +"1","resorcinol","Resorcinol cluster" +"1","lassopeptide","Lasso peptide cluster" +"1","hserlactone","Homoserine lactone cluster" +"1","acyl_amino_acids","N-acyl amino acid cluster"
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/pathways_and_systems/ERZ21819995_FASTA_gp.csv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,1199 @@ +"GenProp0001","Chorismate biosynthesis via shikimate","YES" +"GenProp0002","Coenzyme F420 utilization","YES" +"GenProp0010","Inteins","YES" +"GenProp0021","CRISPR region","YES" +"GenProp0023","Glyoxylate shunt","YES" +"GenProp0029","Nitrogen fixation","PARTIAL" +"GenProp0030","Glutathione biosynthesis","YES" +"GenProp0033","TCA cycle","YES" +"GenProp0036","Biotin biosynthesis","YES" +"GenProp0037","Tryptophan biosynthesis from ribose-5-phosphate","YES" +"GenProp0038","Tetrahydrofolate biosynthesis from GTP and PABA","YES" +"GenProp0046","IPP biosynthesis","YES" +"GenProp0047","IPP biosynthesis via mevalonate","PARTIAL" +"GenProp0048","IPP biosynthesis via deoxyxylulose","YES" +"GenProp0051","Urease","YES" +"GenProp0052","Type III secretion","PARTIAL" +"GenProp0053","Type II secretion","PARTIAL" +"GenProp0055","Polyhydroxyalkanoic acids","PARTIAL" +"GenProp0057","NAD(P) biosynthesis from L-aspartate and DHAP","YES" +"GenProp0058","Menaquinone biosynthesis via SEPHCHC","PARTIAL" +"GenProp0059","Type I secretion","YES" +"GenProp0061","Lipoprotein system lgt/lsp/lnt","YES" +"GenProp0109","Histidine biosynthesis from ribose-5-phosphate","YES" +"GenProp0110","Purine (inosine-5'-phosphate) biosynthesis from ribose-5-phosphate","YES" +"GenProp0111","Proline biosynthesis from glutamate","YES" +"GenProp0114","Nucleotide excision repair","YES" +"GenProp0117","Arginine biosynthesis from ornithine, carbamoyl-p and aspartate","YES" +"GenProp0118","Ornithine biosynthesis from glutamate, acetylated branch","YES" +"GenProp0119","PTS transport system","PARTIAL" +"GenProp0120","Pentose phosphate cycle","YES" +"GenProp0124","Pantothenate biosynthesis from aspartate and 2-oxoisovalerate","YES" +"GenProp0125","Lysine biosynthesis via diaminopimelate (DAP)","YES" +"GenProp0127","Tat (Sec-independent) protein export","YES" +"GenProp0128","F1/F0 ATPase","YES" +"GenProp0129","Na+-translocating NADH-quinone reductase","YES" +"GenProp0130","Rnf-type electron transport complex","YES" +"GenProp0132","Transcription termination/antitermination Nus factors","YES" +"GenProp0135","NADH dehydrogenase complex I","PARTIAL" +"GenProp0136","Ubiquinone biosynthesis from chorismate, aerobic","YES" +"GenProp0137","Iron-sulfur cluster assembly SUF system","YES" +"GenProp0138","Iron-sulfur cluster assembly iscSUA-hscBA-fdx system","PARTIAL" +"GenProp0139","Degradation of tyrosine via homogentisate","YES" +"GenProp0141","Galactose-6-phosphate degradation via tagatose-6-phosphate","NO" +"GenProp0143","Leloir pathway (galactose/glucose interconversion)","PARTIAL" +"GenProp0144","Chlorophyllide a biosynthesis from protoporphyrin IX","YES" +"GenProp0146","Bacteriochlorophyll biosynthesis from chlorophyllide a","YES" +"GenProp0147","Glycine betaine biosynthesis from choline","YES" +"GenProp0150","Chlorophyll biosynthesis from chlorophyllide a","YES" +"GenProp0151","Resistance to mercury","PARTIAL" +"GenProp0155","Dissimilatory sulfate reduction","NO" +"GenProp0156","Cyanophycin-like storage polymers","YES" +"GenProp0159","Threonine biosynthesis from aspartate semialdehyde","YES" +"GenProp0160","Aspartate semialdehyde biosynthesis from aspartate","YES" +"GenProp0162","Isoleucine biosynthesis from threonine and pyruvate","YES" +"GenProp0163","Valine biosynthesis from pyruvate","YES" +"GenProp0164","Leucine biosynthesis from pyruvate and acetyl-CoA","YES" +"GenProp0165","MinCDE system","YES" +"GenProp0166","MreBCD system","YES" +"GenProp0168","Glycogen system","YES" +"GenProp0170","Coenzyme PQQ biosynthesis","YES" +"GenProp0171","Coenzyme A biosynthesis from pantothenate","YES" +"GenProp0172","Potassium-transporting ATPase KdpFABC","YES" +"GenProp0176","TRAP-T (tripartite ATP-independent periplasmic transporters) family transporters","YES" +"GenProp0178","Glycine cleavage system","YES" +"GenProp0182","Reduction of oxidized methionine","YES" +"GenProp0183","dTDP-L-rhamnose biosynthesis from dTDP-4-dehydro-L-rhamnose","YES" +"GenProp0187","Pyrimidine (uridine-5'-phosphate) de novo biosynthesis","YES" +"GenProp0188","GatABC aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase complex","YES" +"GenProp0189","tRNA-Gln direct aminoacylation","YES" +"GenProp0190","Phosphate ABC transporter (pstSCAB-phoU)","YES" +"GenProp0191","Sulfate/thiosulfate ABC transporter","YES" +"GenProp0192","Molybdate ABC transporter","YES" +"GenProp0193","Lysine biosynthesis via alpha-aminoadipate (AAA pathway)","YES" +"GenProp0198","RuvABC Holliday junction complex","YES" +"GenProp0199","Lysine biosynthesis","YES" +"GenProp0201","SMC-ScpA-ScpB complex","YES" +"GenProp0203","LPS inner core biosynthesis, ketodeoxyoctonate and heptose type","PARTIAL" +"GenProp0204","KDO(2)-lipid A (Re LPS) biosynthesis and delivery","YES" +"GenProp0207","Lipoprotein localization system lolABCDE","YES" +"GenProp0208","Phage: major features","PARTIAL" +"GenProp0209","Sec system preprotein translocase","YES" +"GenProp0213","Resistance to Reactive Oxygen Species (ROS)","YES" +"GenProp0214","Acetyl-CoA carboxylase complex","YES" +"GenProp0215","SOS response","YES" +"GenProp0216","RecBCD pathway","NO" +"GenProp0217","5-aminolevulinate biosynthesis (glutamate pathway)","YES" +"GenProp0218","Cysteine biosynthesis from serine","YES" +"GenProp0219","Spermidine biosynthesis from arginine (via agmatine)","YES" +"GenProp0220","Uroporhyrinogen III biosynthesis from 5-aminolevulinate","YES" +"GenProp0221","Protoporphyrin IX biosynthesis from uroporphyrinogen III","YES" +"GenProp0222","Protoheme from protoporphyrin IX","YES" +"GenProp0223","5-aminolevulinate biosynthesis from succinyl-CoA and glycine","YES" +"GenProp0225","Mismatch repair","YES" +"GenProp0226","Integron","YES" +"GenProp0231","4-hydroxyphenylacetate degradation","PARTIAL" +"GenProp0232","Phosphonates C-P lyase system","YES" +"GenProp0233","GABA utilization","PARTIAL" +"GenProp0236","Phosphonates ABC transport","YES" +"GenProp0238","2-aminoethylphosphonate catabolism to acetaldehyde","PARTIAL" +"GenProp0240","Propionyl-CoA catabolism via methylcitric acid","PARTIAL" +"GenProp0241","Phosphonate catabolism","YES" +"GenProp0244","Chaperone system: DnaK-DnaJ-GrpE","YES" +"GenProp0245","Chaperone system: GroEL/GroES","YES" +"GenProp0246","Chaperone system: thermosome/prefoldin","NO" +"GenProp0250","Hydroxyethylthiazole (HET) biosynthesis from 1-deoxy-D-xylulose-5-phosphate, Cysteine, and either Tyr or Gly","PARTIAL" +"GenProp0251","ClpXP degradation machine","YES" +"GenProp0252","Thiamine/TPP ABC transporter ThiBPQ","PARTIAL" +"GenProp0253","Hydroxymethylpyrimidine pyrophosphate (HMP-P) biosynthesis from aminoimidazole ribotide","YES" +"GenProp0254","Thiamine pyrophosphate (TPP) biosynthesis from HMP-PP and HET-P","YES" +"GenProp0255","5-aminolevulinate biosynthesis","YES" +"GenProp0258","tRNA aminoacylation","PARTIAL" +"GenProp0259","tRNA-Asn direct aminoacylation","YES" +"GenProp0261","Thiamine pyrophosphate (TPP) de novo biosynthesis","YES" +"GenProp0262","RNA polymerase, bacterial","YES" +"GenProp0263","DNA polymerase III, bacterial","PARTIAL" +"GenProp0264","Glucosylglycerol biosynthesis","YES" +"GenProp0265","Trehalose biosynthesis, OtsAB pathway","YES" +"GenProp0266","Trehalose biosynthesis, TreYZ pathway","YES" +"GenProp0268","Ectoine biosynthesis","PARTIAL" +"GenProp0269","Coenzyme B12 biosynthesis from cob(II)yrinate diamide","YES" +"GenProp0271","Trehalose utilization","NO" +"GenProp0272","Pyruvate fermentation to acetoin","PARTIAL" +"GenProp0273","Protocatechuate degradation to beta-ketoadipate","PARTIAL" +"GenProp0275","Cobyrinic acid diamide biosynthesis, anaerobic pathway","YES" +"GenProp0277","Cobalt import system (ABC transporter: 3.A.1.18.1)","YES" +"GenProp0281","Mannosylglycerate biosynthesis","NO" +"GenProp0283","Beta-ketoadipate degradation to succinyl-CoA and acetyl-CoA","YES" +"GenProp0287","Ribonucleotide reduction","PARTIAL" +"GenProp0288","Tetrahydromethanopterin S-methyltransferase complex","NO" +"GenProp0289","Class I (aerobic) ribonucleotide reductase","YES" +"GenProp0290","Class II (B12-dependent) ribonucleotide reductase","YES" +"GenProp0291","Class III (anaerobic) ribonucleotide reductase","NO" +"GenProp0292","Ethanolamine degradation organelle","YES" +"GenProp0294","Ethanolamine degradation proteinaceous organelle","YES" +"GenProp0295","Prokaryotic N-terminal cleavage/methylation, type IV pilin-like","YES" +"GenProp0304","Cysteine biosynthesis, tRNA-dependent","NO" +"GenProp0305","Cysteine biosynthesis","YES" +"GenProp0309","Arginine catabolism to glutamate via arginine succinyltransferase (AST)","NO" +"GenProp0310","CRISPR system, I-F/Ypest subtype","NO" +"GenProp0311","Competence-related genes","YES" +"GenProp0313","CRISPR system, I-C/Dvulg subtype","YES" +"GenProp0314","CRISPR system, II/Nmeni subtype","PARTIAL" +"GenProp0315","CRISPR system, I-E/Ecoli subtype","YES" +"GenProp0316","CRISPR system, III-B/RAMP module subtype","PARTIAL" +"GenProp0317","CRISPR system, I-B subtype, Tneap branch","PARTIAL" +"GenProp0318","CRISPR system, III-A/Mtube subtype","PARTIAL" +"GenProp0319","CRISPR system, I-A/Apern subtype","PARTIAL" +"GenProp0320","CRISPR system, I-B subtype, Hmari branch","YES" +"GenProp0321","Toxin-antitoxin system, type II","YES" +"GenProp0322","Addiction module, Hig class","YES" +"GenProp0323","Addiction module, ParE class","YES" +"GenProp0324","Addiction module, RelE-RelB class","YES" +"GenProp0326","Protein sorting system, PEP-CTERM/exosortase (generic)","YES" +"GenProp0455","Restriction enzyme system, type I","YES" +"GenProp0456","Attenuation system: tryptophanase","NO" +"GenProp0457","Rhamnose catabolism","YES" +"GenProp0458","Fucose catabolism","PARTIAL" +"GenProp0460","Gas vesicle","NO" +"GenProp0465","Circadian clock system KaiABC","YES" +"GenProp0466","Molybdopterin biosynthesis","YES" +"GenProp0468","Entner-Doudoroff pathway","YES" +"GenProp0469","CRISPR system, Dpsyc subtype","PARTIAL" +"GenProp0470","Sporadically distributed four-gene operon","PARTIAL" +"GenProp0471","Uncharacterized gene pair TIGR02683/TIGR02684","YES" +"GenProp0472","Uncharacterized gene pair TIGR02687/TIGR02688","YES" +"GenProp0473","Arsenite oxidase","PARTIAL" +"GenProp0474","Arsenical resistance system","YES" +"GenProp0476","Protein-coding palindromic elements","NO" +"GenProp0478","Acetyl-CoA -- acetate interconversion via acetyl phosphate","YES" +"GenProp0479","Acetate -- acetyl-CoA interconversions","YES" +"GenProp0480","Acetyl-CoA biosynthesis from acetate, direct","YES" +"GenProp0481","Urea carboxylase/allophanate hydrolase pathway","YES" +"GenProp0483","Cytochrome c oxidase, cbb3-type","NO" +"GenProp0484","F-type conjugation system (type IV secretion) specific components","NO" +"GenProp0485","F and P-type conjugation systems (type IV secretion), common components","PARTIAL" +"GenProp0487","RepABC-type alpha-proteobacterial replicon(s)","PARTIAL" +"GenProp0488","Superoxide dismutase, nickel-type","YES" +"GenProp0489","F-type conjugation system","PARTIAL" +"GenProp0490","Ti-type conjugation system","PARTIAL" +"GenProp0491","RecFOR recombination pathway","YES" +"GenProp0492","Nonhomologous end-joining, bacterial type","YES" +"GenProp0493","AddAB pathway","YES" +"GenProp0494","Nickel import ABC transporter","NO" +"GenProp0542","Tol-Pal system","YES" +"GenProp0543","TonB-dependent transport","PARTIAL" +"GenProp0562","Formaldehyde detoxification, glutathione-dependent","YES" +"GenProp0610","Endospore formation marker gene set","NO" +"GenProp0611","Aerobic respiration","YES" +"GenProp0612","Aerobic electron transfer (transport) chain, ETC","YES" +"GenProp0613","Cytochrome c reductase","YES" +"GenProp0614","Cytochrome c oxidase, mitochondrial, caa3-type","PARTIAL" +"GenProp0615","Cytochrome c based oxygen reduction and quinone re-oxidation","YES" +"GenProp0616","Single complex oxygen reduction and quinone re-oxidation","YES" +"GenProp0617","Cytochrome (quinone) oxidase, bd type","YES" +"GenProp0618","Cytochrome (quinone) oxidase, bo type","PARTIAL" +"GenProp0620","Cytochrome (quinone) oxidase, aa3 type, QoxABCD","NO" +"GenProp0624","Sulfite reductase complex, Salmonella/Clostridium type","NO" +"GenProp0626","Protein sorting system, sortase type, LPXTG/SrtA class","YES" +"GenProp0629","A1/A0 ATPase","PARTIAL" +"GenProp0630","2-oxoglutarate dehydrogenase system","YES" +"GenProp0631","Nitrogenase, Fe-only","NO" +"GenProp0632","Nitrogenase, V-containing","NO" +"GenProp0633","Nitrogenase, Mo-containing","YES" +"GenProp0634","Sigma-54 (RpoN) systems","YES" +"GenProp0636","Respiratory nitrate reductase","NO" +"GenProp0637","Anaerobic dimethyl sulfoxide reductase","PARTIAL" +"GenProp0639","Arginine degradation via citrulline, ATP-generating","PARTIAL" +"GenProp0640","Xanthine dehydrogenase","PARTIAL" +"GenProp0641","Spermidine biosynthesis from putrescine and S-adenosylmethionine","YES" +"GenProp0642","Putrescine biosynthesis from arginine utilizing agmatinase","YES" +"GenProp0643","Putrescine biosynthesis from arginine via ornithine","PARTIAL" +"GenProp0644","Putrescine biosynthesis from glutamate via ornithine","PARTIAL" +"GenProp0645","Putrescine biosynthesis","YES" +"GenProp0648","Phage shock protein regulon","NO" +"GenProp0649","Heterocyst-related ABC exporter DevBCA","YES" +"GenProp0651","Ectoine ABC transporter EhuABCD","NO" +"GenProp0652","Exopolysaccharide biosynthesis, exosortase A-associated","PARTIAL" +"GenProp0653","Ectoine catabolism","PARTIAL" +"GenProp0654","Intracellular sulfur oxidation","PARTIAL" +"GenProp0655","Exopolysaccharide biosynthesis, exosortase B-associated","PARTIAL" +"GenProp0658","Cellulose biosynthesis","YES" +"GenProp0659","Tryptophan degradation to anthranilate","PARTIAL" +"GenProp0660","Photosystem I","YES" +"GenProp0661","Photosystem II","YES" +"GenProp0662","Photosynthetic reaction center, alphaproteobacterial type","YES" +"GenProp0663","Verrucomicrobium/Chthoniobacter four-plus-PEP_CTERM cassette","NO" +"GenProp0664","Protein sorting system, sortase type, SrtB class","NO" +"GenProp0665","Peptide chain release operon, RctB-like/PrfH","NO" +"GenProp0666","Membrane-associated monooxygenase (methane/ammonia)","NO" +"GenProp0668","Acetyltransferase/synthase/peptidase cassette","NO" +"GenProp0669","Protein sorting system, putative, exosortase G class","NO" +"GenProp0670","CRISPR system, Aferr subtype","NO" +"GenProp0671","H4MPT-linked C1 transfer pathway","PARTIAL" +"GenProp0672","Citrate lyase system","NO" +"GenProp0673","Ribulose monophosphate pathway","NO" +"GenProp0674","Malonate decarboxylase","NO" +"GenProp0676","Alkylhydroperoxide reductase AhpCF (peroxiredoxin)","NO" +"GenProp0677","Queuosine (Q-tRNA) biosynthesis from preQ0","YES" +"GenProp0678","C-type cytochrome biogenesis, system I","YES" +"GenProp0680","C-type cytochrome biogenesis, system II","YES" +"GenProp0681","Fatty acid biosynthesis from acetyl-CoA","YES" +"GenProp0682","Formate-dependent nitrite reductase, seven-gene type","NO" +"GenProp0683","Cytochrome c nitrite reductase NrfHA","NO" +"GenProp0684","FtsH/HflKC protease complex","YES" +"GenProp0685","CRISPR system, I-D/Cyano subtype","YES" +"GenProp0686","Allantoin catabolism to glyoxalate and urea","PARTIAL" +"GenProp0687","Allantoin catabolism to oxamate and carbamoyl-phosphate","PARTIAL" +"GenProp0688","Urate catabolism to allantoin","PARTIAL" +"GenProp0689","Glyoxalate conversion to phosphoglycerate","PARTIAL" +"GenProp0691","Glycolysis","YES" +"GenProp0692","Selenouridine-containing tRNA","YES" +"GenProp0693","Fructose utilization as fructose-1,6-bisphosphate","PARTIAL" +"GenProp0694","Glucose utilization as fructose-1,6-bisphosphate","YES" +"GenProp0695","Cytochrome b558/566","NO" +"GenProp0696","Xanthine utilization as a source of guanine-monophosphate (GMP)","YES" +"GenProp0697","Guanine monophosphate (GMP) biosynthesis from inosine monophosphate (IMP)","YES" +"GenProp0698","Xanthine catabolism to urate","YES" +"GenProp0699","DNA gyrase","PARTIAL" +"GenProp0700","Purine catabolism via urate, xanthine and allantoin","YES" +"GenProp0701","DNA sulfur modification system dnd","YES" +"GenProp0702","Benzoyl-CoA reductase","NO" +"GenProp0703","4-hydroxybenzoyl-CoA reductase","NO" +"GenProp0704","tRNA U34 carboxymethylaminomethyl modification","YES" +"GenProp0705","Xanthine dehydrogenase, bacillus type (pucABCDE)","PARTIAL" +"GenProp0706","Cyclohexa-1,5-diene-1-carbonyl-CoA to 3-hydroxypimelyl-CoA, dch/had/oah Pathway","NO" +"GenProp0707","Botulinum toxin system","NO" +"GenProp0708","Catechol meta-cleavage pathway","PARTIAL" +"GenProp0709","Benzoate catabolism BoxABC pathway","PARTIAL" +"GenProp0710","Generic phosphonates utilization","YES" +"GenProp0711","Catechol ortho-cleavage upper pathway","PARTIAL" +"GenProp0712","2-aminoethylphosphonate (AEP) ABC transporter, type I, PhnSTUV","NO" +"GenProp0713","2-aminoethylphosphonate catabolism via phosphonoacetate","PARTIAL" +"GenProp0714","Galactarate utilization via tartronate semi-aldehyde","PARTIAL" +"GenProp0715","Galactarate utilization via 2-oxoglutarate semialdehyde","YES" +"GenProp0716","Glucarate utilization via tartronate semi-aldehyde","NO" +"GenProp0717","Glucarate utilization via 2-oxoglutarate semialdehyde","PARTIAL" +"GenProp0718","Oxalate degradation","PARTIAL" +"GenProp0719","Methyl-coenzyme M reductase","NO" +"GenProp0720","2-aminoethylphosphonate utilization","YES" +"GenProp0721","2-aminoethylphosphonate (AEP) ABC transporter, type II","YES" +"GenProp0722","Methanogenesis marker set","NO" +"GenProp0723","Hydrogenase, nickel and F420-dependent","NO" +"GenProp0724","Phosphonoacetaldehyde biosynthesis from phosphoenolpyruvate","YES" +"GenProp0725","Outer membrane protein assembly complex","YES" +"GenProp0726","Selenium-dependent molybdenum hydroxylase system","NO" +"GenProp0728","AMP metabolism using type III Rubisco","NO" +"GenProp0729","Methionine salvage from methylthioadenosine","YES" +"GenProp0730","Methylthioadenosine to methylthioribose-1-phosphate via MTR","YES" +"GenProp0732","Methionine salvage enolase-phosphate pair MtnW/MtnX","NO" +"GenProp0735","Type VI secretion","PARTIAL" +"GenProp0736","Proposed phosphonate catabolism pathway HpnWXZ","PARTIAL" +"GenProp0737","Anaerobic glycerol-3-phosphate dehydrogenase complex","NO" +"GenProp0738","Agmatine to putrescine via N-carbamoylputrescine","NO" +"GenProp0739","Iron-sulfur cluster assembly CsdA-CsdE system","NO" +"GenProp0740","Translation initiation, bacterial","YES" +"GenProp0741","Translation elongation, bacterial","YES" +"GenProp0742","Iron-sulfur cluster assembly NIF system","PARTIAL" +"GenProp0743","Urea ABC transporter UrtABCDE","YES" +"GenProp0744","Glyoxalase pathway, glutathione dependent","YES" +"GenProp0745","Lipoyl-protein attachment","YES" +"GenProp0746","Translation termination, bacterial","YES" +"GenProp0747","Adenosine monophosphate (AMP) biosynthesis from inosine monophosphate (IMP)","YES" +"GenProp0748","Choline ABC transporter, ChoXWV family","YES" +"GenProp0749","Choline sulfate utilization","PARTIAL" +"GenProp0750","UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate","YES" +"GenProp0751","Acidobacterial ADOP/PadR gene pairs","NO" +"GenProp0752","Ergothioneine biosynthesis","YES" +"GenProp0753","Mycothiol biosynthesis","NO" +"GenProp0754","Acetate production from acetylphosphate","YES" +"GenProp0756","Fumarate reductase complex","PARTIAL" +"GenProp0757","Quorum-sensing, autoinducer-2 system","YES" +"GenProp0758","Lycopene biosynthesis from IPP","YES" +"GenProp0759","Para-aminobenzoic acid (PABA) biosynthesis from chorismate","PARTIAL" +"GenProp0764","DMSO reductase family type II enzyme","NO" +"GenProp0766","Anhydro-N-acetylmuramic acid to N-acetylglucosamine-phosphate","YES" +"GenProp0767","Very short patch repair","YES" +"GenProp0768","CRISPR system, Pging subtype","PARTIAL" +"GenProp0778","Protein sorting system, GlyGly-CTERM/rhombosortase","PARTIAL" +"GenProp0781","Gliding motility, Bacteroidetes type","YES" +"GenProp0786","Lysine biosynthesis via diaminopimelate (DAP), succinylated branch","YES" +"GenProp0787","Lysine biosynthesis via diaminopimelate (DAP), acetylated branch","NO" +"GenProp0788","Lysine biosynthesis via diaminopimelate (DAP) utilizing ammonia and NADPH","NO" +"GenProp0789","Homocysteine regeneration from S-adenosylhomocysteine","YES" +"GenProp0790","Sporadic pair TIGR03545/TIGR03546","NO" +"GenProp0791","Coenzyme F420 biosynthesis","PARTIAL" +"GenProp0792","7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) biosynthesis","YES" +"GenProp0793","CMP-N-acetylneuraminate biosynthesis from UDP-N-acetylglucosamine","YES" +"GenProp0794","Proposed N-acetyl sugar amidation module WbuXYZ","PARTIAL" +"GenProp0796","CMP-pseudaminic acid biosynthesis from UDP-N-acetylglucosamine","YES" +"GenProp0797","Selenocysteinyl-tRNA, PSTK/SepSecS pathway","NO" +"GenProp0798","Enterococcus/Aeromonas extended locus","NO" +"GenProp0802","Ribosome biogenesis proteins, bacteria","YES" +"GenProp0806","Replication initiation, bacterial","YES" +"GenProp0809","Bacteriocin system, lactococcin 972 group","NO" +"GenProp0810","Encapsulin proteinaceous organelle","YES" +"GenProp0811","S-layer homology domain-mediated cell wall binding","YES" +"GenProp0812","Rho-dependent termination","YES" +"GenProp0813","Pyrimidine utilization","PARTIAL" +"GenProp0814","Urea utilization","YES" +"GenProp0821","Putative Na:solute symporter two-gene cassette","YES" +"GenProp0822","Poly(gamma-glutamic acid) biosynthesis","YES" +"GenProp0828","Heme uptake system, NEAT-domain mediated","PARTIAL" +"GenProp0829","Menaquinone biosynthesis via futalosine","PARTIAL" +"GenProp0830","Integral membrane mystery pair","NO" +"GenProp0833","Proteasome-targeting modification by pupylation","YES" +"GenProp0834","Proteasome, bacterial","YES" +"GenProp0835","ATP-dependent protease HslVU","YES" +"GenProp0836","Menaquinone biosynthesis","YES" +"GenProp0837","1-acylglycerol-3-phosphate biosynthesis, PlsX/Y pathway","YES" +"GenProp0839","2-oxoacid:ferredoxin oxidoreductase, multisubunit form","YES" +"GenProp0840","Polyphosphate kinase/exopolyphosphatase system","YES" +"GenProp0841","2-oxoacid:ferredoxin oxidoreductase","YES" +"GenProp0842","2-oxoacid:acceptor oxidoreductase, 2 subunit form","YES" +"GenProp0845","Protein sorting system, KxYKxGKxW class","NO" +"GenProp0847","Exosporium","NO" +"GenProp0853","Lantibiotic system, gallidermin/epidermin family","NO" +"GenProp0854","ParB-rel/ThiF-rel cassette PRTRC","NO" +"GenProp0855","Integrating conjugative element, PFGI-1 class","NO" +"GenProp0857","Anchored repeat-class ABC transporter, P. acnes type","NO" +"GenProp0858","Conjugative transposon, Bacteroides type","PARTIAL" +"GenProp0859","Protein sorting system, proteobacterial dedicated sortase type","YES" +"GenProp0860","Tryptophan tryptophylquinone modification of methylamine dehydrogenase","NO" +"GenProp0861","Bacteriocin system, NHLP (nif11/nitrile hydratase leader peptide) transport group","YES" +"GenProp0862","Pyridoxal phosphate biosynthesis, PdxA/PdxJ pathway","YES" +"GenProp0867","Decarboxylation/antiport proton-motive cycle: aspartate-alanine","NO" +"GenProp0871","Decarboxylation/antiport proton-motive cycle: ornithine-putrescine","NO" +"GenProp0872","Decarboxylation/antiport proton-motive cycle: histidine-histamine","NO" +"GenProp0877","Flagellar motor stator complex","YES" +"GenProp0878","N(epsilon)-acetyl-beta-lysine biosynthesis","NO" +"GenProp0879","Flagellar export apparatus","PARTIAL" +"GenProp0880","Flagellar basal body complex","YES" +"GenProp0881","Flagellar assembly apparatus","YES" +"GenProp0882","Flagellar filament and hook complex","YES" +"GenProp0883","Flagellar motor switch (rotor) complex","PARTIAL" +"GenProp0885","Flagellar post-translational modification components","YES" +"GenProp0886","Flagellar components of unknown function","PARTIAL" +"GenProp0891","Coenzyme M biosynthesis","PARTIAL" +"GenProp0893","Sulfopyruvate biosynthesis via L-cysteate","NO" +"GenProp0894","Actinobacterial uncharacterized trio","PARTIAL" +"GenProp0895","Alcohol ABC transporter, PedABC-type","YES" +"GenProp0896","Proposed F420-0 transporter","NO" +"GenProp0898","RNA ligase/unknown protein pair","NO" +"GenProp0899","Nitrile hydratase","YES" +"GenProp0901","Post-ribosomal natural product synthesis system, Burkholderia TOMM-type","PARTIAL" +"GenProp0902","Quinohemoprotein amine dehydrogenase","NO" +"GenProp0903","Radical SAM/uracil DNA glycosylase system","YES" +"GenProp0904","Type VII secretion, Actinobacteria form","PARTIAL" +"GenProp0905","Type VII secretion, Firmicutes form","PARTIAL" +"GenProp0907","Poly-beta-1,6 N-acetyl-D-glucosamine system, PgaABCD type","NO" +"GenProp0908","2,3-diaminopropionic acid biosynthesis","PARTIAL" +"GenProp0909","Capreomycidine biosynthesis","NO" +"GenProp0910","Butyryl-CoA to butyrate, phosphotransbutyrylase pathway","NO" +"GenProp0911","Butyryl-CoA to butyrate, acetate CoA-transferase pathway","NO" +"GenProp0914","Hydrogenase, [FeFe]-dependent","NO" +"GenProp0915","Hydrogenase, mono-iron type","NO" +"GenProp0916","Radical SAM/uncharacterized protein TIGR03936 system","YES" +"GenProp0917","Mycofactocin system","PARTIAL" +"GenProp0918","Anaerobic sulfatase/maturase system","PARTIAL" +"GenProp0919","SCIFF/radical SAM Clostridial gene pair","NO" +"GenProp0920","Radical SAM Y_X(10)_GDL system","NO" +"GenProp0921","Radical SAM pair and His-Xaa-Ser repeats peptide","NO" +"GenProp0922","CRISPR system, Myxan subtype","PARTIAL" +"GenProp0923","Mycothiol system","PARTIAL" +"GenProp0927","Bacillithiol biosynthesis","YES" +"GenProp0928","OMP chaperone system: SurA-Skp-DegP","YES" +"GenProp0930","GDP-4-keto-6-deoxymannose biosynthesis from beta-D-fructose-6-phosphate","YES" +"GenProp0933","Bacillithiol utilization","YES" +"GenProp0934","Dimethyl sulphone utilization (aerobic)","NO" +"GenProp0935","Uptake/catabolism system KPN_01854/KPN_01858","NO" +"GenProp0936","Bacteriocin system, sporulation delay protein group","NO" +"GenProp0938","Glycine radical enzyme system, YjjI/YjjW pair","NO" +"GenProp0939","RSAM-containing biosynthetic cluster, MSMEG_0568 system","YES" +"GenProp0940","Metallo-mystery pair","YES" +"GenProp0941","TonB-dependent nutrient uptake pairs, RagAB/SusCD type","YES" +"GenProp0942","Alkane biosynthesis, cyanobacterial","YES" +"GenProp0943","Pyruvate formate-lyase system","PARTIAL" +"GenProp0944","Cohesin/dockerin (cellulosome-like) system","YES" +"GenProp0945","Radical SAM maturase bacteriocin system, CLI_3235 type","NO" +"GenProp0948","RNA repair, Hen1/Pnkp system","YES" +"GenProp0950","dTDP-4-dehydro-6-deoxy-alpha-D-glucose biosynthesis from glucose-1-phosphate","YES" +"GenProp0954","Radical SAM-cylized peptide, Pep1357C family","NO" +"GenProp0955","Modified peptide/radical SAM maturase system, YydFG family","NO" +"GenProp0956","Radical SAM maturase/selenobacteriocin system","NO" +"GenProp0957","Protein sorting system, SipW class","PARTIAL" +"GenProp0958","D-alanyl-lipoteichoic acid biosynthesis","NO" +"GenProp0961","Heme metabolism pair HutWX","NO" +"GenProp0962","Methanobactin biosynthesis, Mb-OB3b family","NO" +"GenProp0967","Radical SAM maturase system, CXXX repeats type","NO" +"GenProp0969","Biosynthesis of UDP-N-acetyl-D-mannosaminuronic acid (UDP-ManNAcA)","YES" +"GenProp0970","Biosynthesis of Und-PP-GlcNAc","PARTIAL" +"GenProp0971","Biosynthesis of undecaprenyl phosphate (Und-P)","YES" +"GenProp0972","dTDP-4-acetamido-4,6-dideoxy-D-galactose (dTDP-Fuc4NAc) biosynthesis","PARTIAL" +"GenProp0975","Biosynthesis of UDP-N-acetyl-D-mannosamine (UDP-ManNAc)","YES" +"GenProp0977","DNA ligase/helicase system","YES" +"GenProp0978","Protein sorting system, PGF-CTERM/archaeosortase A","NO" +"GenProp0979","Protein sorting system, PEF-CTERM/archaeosortase C","NO" +"GenProp0980","Protein sorting system, putative, exosortase F class","NO" +"GenProp0981","Radical SAM/lipoprotein system","NO" +"GenProp0982","Radical SAM maturase system, FibroRumin system","NO" +"GenProp0983","Protein sorting system, VPXXXP-CTERM/archaeosortase B","NO" +"GenProp0984","Radical SAM maturase system, GG-Bacteroidales group","NO" +"GenProp0985","Protein sorting system, VPDSG-CTERM/exosortase C","NO" +"GenProp0987","Protein sorting system, cyano-PEP-CTERM class","YES" +"GenProp0988","Elongation factor P beta-lysylation","YES" +"GenProp0989","Protein sorting system, VPEID-CTERM/exosortase E","PARTIAL" +"GenProp0991","ATP-grasp maturase system, microviridin/marinostatin class","NO" +"GenProp0992","Radical SAM maturase system, methanogen","NO" +"GenProp0993","Protein sorting system, PIP-CTERM/archaeosortase D","NO" +"GenProp0996","Protein sorting system, IPTLxxWG-CTERM/exosortase H","NO" +"GenProp0999","Por secretion system","YES" +"GenProp1000","ATP-grasp maturase system, uncharacterized","NO" +"GenProp1002","Grasp-with-spasm peptide maturase system","NO" +"GenProp1003","Cysteine S-glycopeptide biosynthesis, sublancin family","NO" +"GenProp1004","Light-independent protochlorophyllide reductase","YES" +"GenProp1005","Protein sorting system, putative, exosortase J class","NO" +"GenProp1006","Orbivirus protein set","NO" +"GenProp1007","Orthobunyavirus protein set","NO" +"GenProp1009","Coronavirus protein set","NO" +"GenProp1010","Accessory Sec system, Actinobacterial type","NO" +"GenProp1011","Quorum-sensing system, cyclic peptide-mediated","NO" +"GenProp1012","Influenzae A virus protein set","NO" +"GenProp1013","Influenzae B virus protein set","NO" +"GenProp1016","Seadornavirus protein set","NO" +"GenProp1017","GDP-D-mannose biosynthesis from b-D-fructose-6-phosphate","YES" +"GenProp1026","Nodulation factor production","NO" +"GenProp1032","dTDP-4-dehydro-L-rhamnose biosynthesis from dTDP-4-dehydro-6-deoxy-alpha-D-glucose","YES" +"GenProp1034","Decarboxylation/antiport proton-motive cycle: oxalate-formate","PARTIAL" +"GenProp1037","Radical SAM/SPASM system GRRM","PARTIAL" +"GenProp1052","Geopeptide radical SAM/SPASM maturase system","NO" +"GenProp1053","RSAM/selenodomain system","YES" +"GenProp1054","Protein sorting system, MSEP-CTERM/exosortase K","YES" +"GenProp1055","Protein sorting system, PEFG-CTERM/thaumarchaeosortase","NO" +"GenProp1057","Radical SAM/SPASM system GeoRSP","NO" +"GenProp1058","2,3-dihydroxybenzoate biosynthesis","YES" +"GenProp1060","tRNA N6-threonylcarbamoyladenosine modification","YES" +"GenProp1061","CRISPR system, PreFran subtype","PARTIAL" +"GenProp1062","Radical SAM/SPASM system Clo7bot","NO" +"GenProp1063","Memo/AMMECR1/rSAM family trio system","PARTIAL" +"GenProp1064","Ovothiol biosynthesis","PARTIAL" +"GenProp1065","Radical SAM/SPASM TIGR04347/TIGR04031 system","NO" +"GenProp1069","FxLD lantipeptide system","PARTIAL" +"GenProp1070","Beta-glutamate biosynthesis","NO" +"GenProp1071","Myo-inositol catabolism","YES" +"GenProp1072","Cyanase system","YES" +"GenProp1074","Type V secretion","YES" +"GenProp1075","Ferrous iron transport Feo system","YES" +"GenProp1076","Choline TMA-lyase system","NO" +"GenProp1077","tRNA(Pro) cmo5UGG modification","YES" +"GenProp1078","Sporulation killing factor system","NO" +"GenProp1079","Lpt lipopolysaccharide export transenvelope protein complex","YES" +"GenProp1080","Protein O-heptosyltransferase with autotransporter target","NO" +"GenProp1081","Replication restart, PriA/PriB primosome pathway","PARTIAL" +"GenProp1082","16S rRNA C1402 m(4)Cm modification","YES" +"GenProp1083","Cyanobactin-like ribosomal natural product biosynthesis","YES" +"GenProp1084","Enduracididine biosynthesis","NO" +"GenProp1085","Pyranoside core peptidyl nucleoside antibiotic biosynthesis","NO" +"GenProp1087","Protein sorting system, vault protein/exosortase N","NO" +"GenProp1088","Thiosulfate oxidation to sulfate","PARTIAL" +"GenProp1089","B12-dependent trimeric diol/glycerol dehydratase","NO" +"GenProp1090","Radical SAM/SPASM maturase system XYE","PARTIAL" +"GenProp1091","Toxin-antitoxin system, type I","NO" +"GenProp1092","Toxin-antitoxin system, type III","NO" +"GenProp1093","Abortive infection proteins","NO" +"GenProp1094","Energy-coupling factor transporters","YES" +"GenProp1095","Exodeoxyribonuclease VII","YES" +"GenProp1098","3-methylarginine biosynthesis","NO" +"GenProp1099","8-oxoguanine DNA repair","YES" +"GenProp1100","Mobile element associated three-Cys-motif pair","YES" +"GenProp1101","Quinoprotein cytochrome relay system","YES" +"GenProp1102","Protein sorting system, CGP-CTERM/unknown of Thermococcaceae","NO" +"GenProp1103","Protein sorting system, Synergist-CTERM/unknown of Synergistetes","NO" +"GenProp1104","Acyl carrier protein phosphopantetheinylation","YES" +"GenProp1108","Endopeptidase ClpXP complex","YES" +"GenProp1109","UvrAB complex","YES" +"GenProp1111","Acetyl-CoA carboxylase complex","YES" +"GenProp1112","Respiratory chain complex II","YES" +"GenProp1113","DnaA-Dps complex","YES" +"GenProp1114","ATP-dependent methionine-importing complex","NO" +"GenProp1115","LptDE outer membrane translocon complex","NO" +"GenProp1116","Bam complex","NO" +"GenProp1117","DNA polymerase III clamp loader chi-psi subcomplex","NO" +"GenProp1118","DnaB-DnaC complex","NO" +"GenProp1119","p-aminobenzoyl-glutamate hydrolase","NO" +"GenProp1120","HipBA toxin-antitoxin complex","YES" +"GenProp1121","ModE complex","NO" +"GenProp1122","Nitrate reductase A complex","NO" +"GenProp1123","DnaB-DnaG complex","NO" +"GenProp1124","UgpAEC-UgpB complex","NO" +"GenProp1125","DinJ-YafQ toxin-antitoxin complex","NO" +"GenProp1126","ProVWX complex","YES" +"GenProp1127","ThiG-ThiH thiazole phosphate synthase complex","NO" +"GenProp1129","Carbamoyl phosphate synthetase complex","YES" +"GenProp1130","DnaB-DnaC-DnaT-PriA-PriB complex","NO" +"GenProp1131","Glutathione-regulated potassium-efflux system KefB-KefG complex","NO" +"GenProp1132","Holo-translocon SecYEG-SecDF-YajC-YidC complex","NO" +"GenProp1133","YoeB-YefM toxin-antitoxin complex","YES" +"GenProp1134","TusBCDE complex","NO" +"GenProp1135","Formate dehydrogenase N complex","NO" +"GenProp1136","Twin-arginine translocation complex","NO" +"GenProp1137","Endopeptidase ClpAP complex","YES" +"GenProp1138","Molybdopterin synthase","YES" +"GenProp1139","Chemotaxis phosphorelay complex CheY-CheZ","NO" +"GenProp1140","IHF complex","YES" +"GenProp1141","Cytochrome bd-I ubiquinol oxidase complex","NO" +"GenProp1142","FtsQBL complex ","NO" +"GenProp1143","Plasma membrane fumarate reductase complex","NO" +"GenProp1144","IscS-ThiL complex","YES" +"GenProp1146","Dha Kinase","NO" +"GenProp1147","Chemotaxis phosphorelay complex CheA-CheY","YES" +"GenProp1148","DMSO reductase complex","NO" +"GenProp1149","Topoisomerase IV","NO" +"GenProp1150","Cobalamin transport complex","NO" +"GenProp1151","MacAB-TolC complex","NO" +"GenProp1152","DnaA-DnaB complex","YES" +"GenProp1153","TRCF-UvrA complex","YES" +"GenProp1154","FtsBL complex","NO" +"GenProp1155","DNA polymerase III proofreading complex","NO" +"GenProp1156","BtuCD complex","NO" +"GenProp1157","Vitamin B12 outer membrane transporter complex","NO" +"GenProp1158","Molybdopterin-synthase adenylyltransferase complex","NO" +"GenProp1159","Enzyme IIA-maltose transporter complex","NO" +"GenProp1160","Glutathione-regulated potassium-efflux system KefC-KefF complex","NO" +"GenProp1161","TusE-MnmA complex","YES" +"GenProp1162","Hda-beta clamp complex","NO" +"GenProp1163","IscS-IscU complex","YES" +"GenProp1164","Cytochrome o ubiquinol oxidase complex","NO" +"GenProp1165","PhnGHIJKL complex","YES" +"GenProp1166","Degradosome","NO" +"GenProp1167","Ethanolamine ammonia-lyase complex","YES" +"GenProp1168","Cus cation efflux complex","YES" +"GenProp1171","YgjD-YeaZ-YjeE complex","YES" +"GenProp1172","Aspartate carbamoyltransferase complex","NO" +"GenProp1173","HslUV protease complex","YES" +"GenProp1174","CdsA-CdsE complex","NO" +"GenProp1175","ThiF-ThiS complex","NO" +"GenProp1176","Protein-conducting channel SecYEG complex","NO" +"GenProp1178","GyrA-GyrB complex","NO" +"GenProp1179","Cascade complex","YES" +"GenProp1180","MukBEF condensin complex","NO" +"GenProp1181","GroEL-GroES complex","YES" +"GenProp1182","H-NS-Hha complex","NO" +"GenProp1183","Flagellar Motor Switch Complex, CCW variant","YES" +"GenProp1184","Sigma-E factor negative regulation complex","NO" +"GenProp1186","DnaA-Hda complex","NO" +"GenProp1187","DnaB-DnaC-DnaT-PriA-PriC complex","NO" +"GenProp1188","Exodeoxyribonuclease V complex","NO" +"GenProp1189","MqsRA toxin-antitoxin complex","NO" +"GenProp1190","UvrBC complex","YES" +"GenProp1191","Ribonucleoside-diphosphate reductase complex","NO" +"GenProp1192","SufBCD complex","YES" +"GenProp1193","RelBE toxin-antitoxin complex","YES" +"GenProp1194","Flagellar Motor Switch Complex, CW variant","YES" +"GenProp1195","DnaA-L2","NO" +"GenProp1196","Cas1-Cas2 complex","YES" +"GenProp1197","IscS-TusA complex","NO" +"GenProp1198","Respiratory chain complex I","NO" +"GenProp1199","MdtBC complex","NO" +"GenProp1200","DnaA-DnaB-DnaC complex","NO" +"GenProp1201","Succinyl-CoA synthetase","YES" +"GenProp1202","Cytochrome bd-II ubiquinol oxidase complex","YES" +"GenProp1204","Maltose transport complex","NO" +"GenProp1205","Trimethylamine-N-oxide reductase TorAC complex","NO" +"GenProp1206","H-NS-Cnu complex","NO" +"GenProp1207","DnaA-HU complex variant 1","YES" +"GenProp1208","DnaB-DnaC-Rep-PriC complex","NO" +"GenProp1209","Hydrogenase-1 complex","NO" +"GenProp1210","DnaA-DiaA complex","NO" +"GenProp1215","Siroheme biosynthesis","YES" +"GenProp1216","Tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate","YES" +"GenProp1217","Superpathway of steroid hormone biosynthesis","YES" +"GenProp1218","Hydroxymethylpyrimidine salvage","YES" +"GenProp1219","Thiamine salvage I","PARTIAL" +"GenProp1220","Fatty acid biosynthesis initiation II","YES" +"GenProp1221","Pyrimidine deoxyribonucleosides salvage","YES" +"GenProp1222","UDP-N-acetyl-D-glucosamine biosynthesis II","YES" +"GenProp1223","L-threonine degradation V","YES" +"GenProp1224","Lipoate salvage I","NO" +"GenProp1225","D-galactarate degradation I","NO" +"GenProp1226","Pyruvate fermentation to ethanol II","YES" +"GenProp1227","Guanosine deoxyribonucleotides de novo biosynthesis I","YES" +"GenProp1228","L-idonate degradation","YES" +"GenProp1229","D-myo-inositol (1,3,4)-trisphosphate biosynthesis","YES" +"GenProp1230","Aerobic respiration III (alternative oxidase pathway)","YES" +"GenProp1231","2-Hydroxypenta-2,4-dienoate degradation","YES" +"GenProp1233","L-glutamate degradation II","PARTIAL" +"GenProp1234","Superpathway of L-tyrosine biosynthesis","YES" +"GenProp1235","Adenine and adenosine salvage III","YES" +"GenProp1236","Retinoate biosynthesis II","NO" +"GenProp1237","Lipoate biosynthesis and incorporation I","YES" +"GenProp1238","L-cysteine biosynthesis IV (fungi)","YES" +"GenProp1239","ADP-L-glycero-beta-D-manno-heptose biosynthesis","NO" +"GenProp1240","Ketolysis","YES" +"GenProp1241","Wybutosine biosynthesis","PARTIAL" +"GenProp1242","Muropeptide degradation","YES" +"GenProp1243","Salicylate biosynthesis I","PARTIAL" +"GenProp1244","Myo-inositol biosynthesis","PARTIAL" +"GenProp1245","L-tyrosine degradation III","YES" +"GenProp1246","Zymosterol biosynthesis","YES" +"GenProp1247","Glycogen biosynthesis I (from ADP-D-Glucose)","YES" +"GenProp1248","Fructose 2,6-bisphosphate biosynthesis","YES" +"GenProp1249","1D-myo-inositol hexakisphosphate biosynthesis I (from Ins(1,4,5)P3)","YES" +"GenProp1250","Aspartate superpathway","PARTIAL" +"GenProp1251","L-tyrosine biosynthesis I","YES" +"GenProp1252","Cardiolipin biosynthesis III","PARTIAL" +"GenProp1253","Superpathway of arginine and polyamine biosynthesis","YES" +"GenProp1254","NADH to hydrogen peroxide electron transfer","YES" +"GenProp1255","Adenosine nucleotides degradation II","YES" +"GenProp1256","Pyruvate to cytochrome bo oxidase electron transfer","YES" +"GenProp1257","Allantoin degradation to glyoxylate I","PARTIAL" +"GenProp1258","Superpathway of S-adenosyl-L-methionine biosynthesis","PARTIAL" +"GenProp1259","Glycogen degradation II","NO" +"GenProp1260","UDP-alpha-D-xylose biosynthesis","YES" +"GenProp1261","Cytokinins 7-N-glucoside biosynthesis","YES" +"GenProp1262","UTP and CTP de novo biosynthesis","YES" +"GenProp1263","Methylglyoxal degradation III","YES" +"GenProp1264","Superpathway of pyrimidine deoxyribonucleoside salvage","PARTIAL" +"GenProp1265","Glyoxylate cycle","PARTIAL" +"GenProp1266","Superpathway of thiamine diphosphate biosynthesis II","YES" +"GenProp1267","Mixed acid fermentation","NO" +"GenProp1268","Adenine salvage","YES" +"GenProp1269","Pyruvate to cytochrome bd oxidase electron transfer","YES" +"GenProp1270","Enterobacterial common antigen biosynthesis","PARTIAL" +"GenProp1271","Myo-, chiro- and scyllo-inositol degradation","YES" +"GenProp1272","Spermine and spermidine degradation III","YES" +"GenProp1273","Thymine degradation","YES" +"GenProp1274","D-serine metabolism","YES" +"GenProp1275","Glycine cleavage","YES" +"GenProp1276","Putrescine degradation V","YES" +"GenProp1277","Sphingosine and sphingosine-1-phosphate metabolism","PARTIAL" +"GenProp1278","Purine ribonucleosides degradation","YES" +"GenProp1279","Superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation","PARTIAL" +"GenProp1280","L-arginine degradation II (AST pathway)","NO" +"GenProp1281","Hydrogen sulfide biosynthesis I","YES" +"GenProp1282","L-arginine degradation III (arginine decarboxylase/agmatinase pathway)","YES" +"GenProp1283","Sulfate reduction I (assimilatory)","PARTIAL" +"GenProp1284","5-Aminoimidazole ribonucleotide biosynthesis I","YES" +"GenProp1286","Myo-inositol degradation I","YES" +"GenProp1287","3-Phenylpropanoate and 3-(3-hydroxyphenyl)propanoate degradation to 2-hydroxypentadienoate","PARTIAL" +"GenProp1288","GABA shunt","YES" +"GenProp1289","Thiamine salvage II","YES" +"GenProp1290","Lipid IVA biosynthesis","YES" +"GenProp1291","Superpathway of chorismate metabolism","NO" +"GenProp1292","L-tryptophan degradation VIII (to tryptophol)","YES" +"GenProp1293","Chitobiose degradation","YES" +"GenProp1294","Pentose phosphate pathway (non-oxidative branch)","YES" +"GenProp1295","Methylerythritol phosphate pathway I","YES" +"GenProp1296","NAD biosynthesis III","YES" +"GenProp1297","Superpathway of glycol metabolism and degradation","YES" +"GenProp1298","Lipoate biosynthesis and incorporation II","PARTIAL" +"GenProp1299","2-O-alpha-mannosyl-D-glycerate degradation","YES" +"GenProp1300","Urea cycle","YES" +"GenProp1301","Superpathway of sulfate assimilation and cysteine biosynthesis","NO" +"GenProp1302","Galactolipid biosynthesis I","YES" +"GenProp1303","N-acetylglucosamine degradation I","YES" +"GenProp1304","Globo-series glycosphingolipids biosynthesis","NO" +"GenProp1305","NAD phosphorylation and transhydrogenation","YES" +"GenProp1306","Glycolysis I (from glucose 6-phosphate)","YES" +"GenProp1307","Superpathway of pyrimidine nucleobases salvage","YES" +"GenProp1308","Fatty acid beta-oxidation VI (peroxisome)","YES" +"GenProp1309","Superpathway of L-phenylalanine biosynthesis","YES" +"GenProp1310","D-galactose degradation I (Leloir pathway)","YES" +"GenProp1311","Protein NEDDylation","YES" +"GenProp1312","Aminopropanol phosphate biosynthesis I","YES" +"GenProp1313","tRNA-uridine 2-thiolation (mammalian mitochondria)","YES" +"GenProp1315","Fatty acid biosynthesis initiation III","YES" +"GenProp1316","Phosphatidate biosynthesis (yeast)","PARTIAL" +"GenProp1317","Protein Pupylation and dePupylation","YES" +"GenProp1318","Superpathway of pyrimidine ribonucleotides de novo biosynthesis","YES" +"GenProp1320","Nitric oxide biosynthesis II (mammals)","YES" +"GenProp1321","Retinoate biosynthesis I","NO" +"GenProp1322","Superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP)","YES" +"GenProp1323","Purine deoxyribonucleosides degradation I","YES" +"GenProp1324","Glycerol degradation V","YES" +"GenProp1325","Superpathway of (Kdo)2-lipid A biosynthesis","YES" +"GenProp1326","Allantoin degradation to ureidoglycolate II (ammonia producing)","PARTIAL" +"GenProp1327","Lipoprotein posttranslational modification","YES" +"GenProp1328","L-isoleucine degradation II","YES" +"GenProp1329","Nitrate reduction III (dissimilatory)","PARTIAL" +"GenProp1330","UDP-beta-L-arabinose biosynthesis II (from beta-L-arabinose)","YES" +"GenProp1331","Pyocyanin biosynthesis","YES" +"GenProp1332","Superpathway of tetrahydrofolate biosynthesis","YES" +"GenProp1333","Superpathway of L-alanine biosynthesis","YES" +"GenProp1334","L-leucine degradation III","YES" +"GenProp1335","Ceramide degradation","YES" +"GenProp1336","2,3-Dihydroxybenzoate biosynthesis","YES" +"GenProp1337","Vitamin E biosynthesis (tocopherols)","YES" +"GenProp1338","Estradiol biosynthesis I (via estrone)","YES" +"GenProp1339","Alpha-linolenate biosynthesis I (plants and red algae)","YES" +"GenProp1340","5-(Carboxymethoxy)uridine biosynthesis","YES" +"GenProp1341","NADH to trimethylamine N-oxide electron transfer","PARTIAL" +"GenProp1342","Pyruvate fermentation to isobutanol (engineered)","YES" +"GenProp1343","Guanosine deoxyribonucleotides de novo biosynthesis II","PARTIAL" +"GenProp1344","Gluconeogenesis I","PARTIAL" +"GenProp1345","Acetate formation from acetyl-CoA I","YES" +"GenProp1346","Glutathione degradation (DUG pathway - yeast)","YES" +"GenProp1347","UDP-alpha-D-glucuronate biosynthesis (from myo-inositol)","YES" +"GenProp1348","2-Oxoglutarate decarboxylation to succinyl-CoA","YES" +"GenProp1349","Superpathway of adenosylcobalamin salvage from cobinamide I","YES" +"GenProp1351","Phosphatidylcholine biosynthesis I","YES" +"GenProp1352","Phosphatidylcholine resynthesis via glycerophosphocholine","YES" +"GenProp1353","Superpathway of photosynthetic hydrogen production","YES" +"GenProp1354","mRNA capping I","YES" +"GenProp1355","Chlorophyll a biosynthesis II","YES" +"GenProp1356","N10-formyl-tetrahydrofolate biosynthesis","YES" +"GenProp1357","L-citrulline degradation","PARTIAL" +"GenProp1358","Superpathway of L-threonine biosynthesis","YES" +"GenProp1359","Glutathione biosynthesis","YES" +"GenProp1360","tRNA processing","YES" +"GenProp1361","Pyrimidine nucleobases salvage II","YES" +"GenProp1362","Putrescine degradation I","PARTIAL" +"GenProp1363","Sphingolipid recycling and degradation (yeast)","YES" +"GenProp1364","Hentriaconta-3,6,9,12,15,19,22,25,28-nonaene biosynthesis","YES" +"GenProp1365","L-asparagine degradation III (mammalian)","YES" +"GenProp1366","2-Methyladeninyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP","YES" +"GenProp1367","D-lactate to cytochrome bo oxidase electron transfer","YES" +"GenProp1368","L-arabinose degradation I","NO" +"GenProp1369","Superpathway of pyrimidine ribonucleosides salvage","YES" +"GenProp1370","Ethylene glycol degradation","PARTIAL" +"GenProp1371","Uracil degradation I (reductive)","YES" +"GenProp1372","Adenosine ribonucleotides de novo biosynthesis","YES" +"GenProp1373","NADH to cytochrome bd oxidase electron transfer II","YES" +"GenProp1374","Glycolate and glyoxylate degradation I","NO" +"GenProp1375","L-tyrosine degradation I","PARTIAL" +"GenProp1376","Very long chain fatty acid biosynthesis II","YES" +"GenProp1377","Biotin biosynthesis from 8-amino-7-oxononanoate I","YES" +"GenProp1378","Adeninyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP","YES" +"GenProp1379","Ethanol degradation IV","YES" +"GenProp1380","Superpathway of pyrimidine ribonucleosides degradation","PARTIAL" +"GenProp1381","Methylphosphonate degradation I","PARTIAL" +"GenProp1382","Phytyl diphosphate biosynthesis","YES" +"GenProp1383","Glutaminyl-tRNAgln biosynthesis via transamidation","YES" +"GenProp1384","Pyrimidine ribonucleosides salvage I","YES" +"GenProp1385","Progesterone biosynthesis","YES" +"GenProp1386","Superpathway of L-serine and glycine biosynthesis I","YES" +"GenProp1387","Superpathway of beta-D-glucuronosides degradation","YES" +"GenProp1388","Pterostilbene biosynthesis","YES" +"GenProp1389","Superpathway of guanosine nucleotides de novo biosynthesis I","YES" +"GenProp1390","Choline degradation I","YES" +"GenProp1391","Glycerol-3-phosphate to fumarate electron transfer","PARTIAL" +"GenProp1392","Sulfate reduction II (assimilatory)","PARTIAL" +"GenProp1393","Allantoin degradation to glyoxylate II","YES" +"GenProp1394","Trehalose degradation I (low osmolarity)","PARTIAL" +"GenProp1395","Superpathway of D-myo-inositol (1,4,5)-trisphosphate metabolism","YES" +"GenProp1396","UTP and CTP dephosphorylation II","YES" +"GenProp1397","(Kdo)2-lipid A biosynthesis I","YES" +"GenProp1398","Poly(glycerol phosphate) wall teichoic acid biosynthesis","NO" +"GenProp1399","Superpathway of L-cysteine biosynthesis (mammalian)","YES" +"GenProp1400","Queuosine biosynthesis","YES" +"GenProp1401","Proline to cytochrome bo oxidase electron transfer","YES" +"GenProp1402","Phenylethylamine degradation I","YES" +"GenProp1403","dTDP-N-acetylthomosamine biosynthesis","PARTIAL" +"GenProp1404","Superpathway of L-aspartate and L-asparagine biosynthesis","PARTIAL" +"GenProp1405","Superpathway of branched chain amino acid biosynthesis","YES" +"GenProp1406","Superpathway of purine nucleotides de novo biosynthesis I","YES" +"GenProp1407","Glycolysis II (from fructose 6-phosphate)","YES" +"GenProp1408","2-Oxoisovalerate decarboxylation to isobutanoyl-CoA","YES" +"GenProp1409","Bis(guanylyl molybdenum cofactor) biosynthesis","YES" +"GenProp1410","Pyrimidine deoxyribonucleosides degradation","YES" +"GenProp1411","All-trans-farnesol biosynthesis","YES" +"GenProp1412","Glycogen degradation I","YES" +"GenProp1413","Mitochondrial L-carnitine shuttle","YES" +"GenProp1414","Glycine betaine degradation II (mammalian)","YES" +"GenProp1415","Superpathway of fatty acid biosynthesis initiation (E. coli)","YES" +"GenProp1416","Allantoin degradation to glyoxylate III","YES" +"GenProp1417","Estradiol biosynthesis II","YES" +"GenProp1418","UMP biosynthesis III","YES" +"GenProp1419","Superpathway of L-methionine biosynthesis (transsulfuration)","YES" +"GenProp1420","Gibberellin inactivation II (methylation)","NO" +"GenProp1421","Heme b biosynthesis I (aerobic)","YES" +"GenProp1423","Sphingolipid biosynthesis (yeast)","PARTIAL" +"GenProp1424","Two-component alkanesulfonate monooxygenase","NO" +"GenProp1425","Pyruvate fermentation to ethanol I","PARTIAL" +"GenProp1426","Aerobic respiration II (cytochrome c) (yeast)","PARTIAL" +"GenProp1427","UMP biosynthesis I","YES" +"GenProp1428","L-arginine degradation I (arginase pathway)","YES" +"GenProp1429","GDP-L-fucose biosynthesis I (from GDP-D-mannose)","YES" +"GenProp1430","Adenine and adenosine salvage II","YES" +"GenProp1431","L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway)","YES" +"GenProp1432","Mevalonate pathway I","PARTIAL" +"GenProp1433","Aminopropylcadaverine biosynthesis","YES" +"GenProp1434","Putrescine degradation II","YES" +"GenProp1436","Superpathway of mycolate biosynthesis","YES" +"GenProp1437","Ethanol degradation III","YES" +"GenProp1438","Pentose phosphate pathway","YES" +"GenProp1439","2-Oxobutanoate degradation I","YES" +"GenProp1441","Acetoacetate degradation (to acetyl CoA)","YES" +"GenProp1442","Protein O-[N-acetyl]-glucosylation","YES" +"GenProp1443","UDP-N-acetyl-D-glucosamine biosynthesis I","YES" +"GenProp1444","Complex N-linked glycan biosynthesis (plants)","NO" +"GenProp1445","L-threonine degradation IV","YES" +"GenProp1446","Adenosine deoxyribonucleotides de novo biosynthesis II","PARTIAL" +"GenProp1447","Methanogenesis from methylthiopropanoate","YES" +"GenProp1448","UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)","YES" +"GenProp1449","D-fructuronate degradation","YES" +"GenProp1450","L-tryptophan biosynthesis","YES" +"GenProp1451","Beta-carotene biosynthesis","YES" +"GenProp1452","Gamma-linolenate biosynthesis II (animals)","YES" +"GenProp1453","Cardiolipin and phosphatidylethanolamine biosynthesis (Xanthomonas)","YES" +"GenProp1454","Adenosylcobalamin biosynthesis from adenosylcobinamide-GDP I","YES" +"GenProp1455","Protein O-mannosylation III (mammals, core M3)","NO" +"GenProp1457","Thiamine diphosphate biosynthesis I (E. coli)","YES" +"GenProp1458","Cinnamate and 3-hydroxycinnamate degradation to 2-hydroxypentadienoate","PARTIAL" +"GenProp1459","D-galactose detoxification","YES" +"GenProp1460","D-myo-inositol (3,4,5,6)-tetrakisphosphate biosynthesis","YES" +"GenProp1461","tRNA-uridine 2-thiolation (cytoplasmic)","YES" +"GenProp1462","Yersiniabactin biosynthesis","PARTIAL" +"GenProp1463","D-allose degradation","YES" +"GenProp1464","Indole-3-acetate biosynthesis I","PARTIAL" +"GenProp1465","Pyrimidine ribonucleosides salvage II","YES" +"GenProp1466","L-ornithine biosynthesis I","YES" +"GenProp1467","L-valine degradation II","YES" +"GenProp1468","UDP-2,3-diacetamido-2,3-dideoxy-alpha-D-mannuronate biosynthesis","YES" +"GenProp1469","Guanosine nucleotides degradation III","YES" +"GenProp1470","Superpathway of heme b biosynthesis from uroporphyrinogen-III","PARTIAL" +"GenProp1471","Beta-caryophyllene biosynthesis","YES" +"GenProp1472","L-ornithine biosynthesis II","YES" +"GenProp1473","Cis-alkene biosynthesis","YES" +"GenProp1474","Nitrate reduction VIIIb (dissimilatory)","PARTIAL" +"GenProp1475","Superpathway of L-lysine, L-threonine and L-methionine biosynthesis I","YES" +"GenProp1476","Autoinducer AI-2 degradation","YES" +"GenProp1477","Coenzyme B/coenzyme M regeneration III (coenzyme F420-dependent)","NO" +"GenProp1478","Chorismate biosynthesis from 3-dehydroquinate","YES" +"GenProp1479","Polyisoprenoid biosynthesis (E. coli)","YES" +"GenProp1480","Peptidoglycan biosynthesis I (meso-diaminopimelate containing)","YES" +"GenProp1481","Superpathway of L-citrulline metabolism","YES" +"GenProp1482","S-methyl-5'-thioadenosine degradation I","YES" +"GenProp1483","Glycogen biosynthesis II (from UDP-D-Glucose)","YES" +"GenProp1484","Superpathway of guanosine nucleotides de novo biosynthesis II","PARTIAL" +"GenProp1485","Pyruvate fermentation to acetoin III","YES" +"GenProp1486","Oleate beta-oxidation","YES" +"GenProp1487","L-lysine degradation XI (mammalian)","YES" +"GenProp1488","Oleate beta-oxidation (thioesterase-dependent, yeast)","YES" +"GenProp1489","Ammonia assimilation cycle I","YES" +"GenProp1490","Indole-3-acetate inactivation VIII","YES" +"GenProp1491","Ac/N-end rule pathway","NO" +"GenProp1492","Sucrose degradation III (sucrose invertase)","YES" +"GenProp1493","Succinate to cytochrome bo oxidase electron transfer","YES" +"GenProp1494","Pyrimidine deoxyribonucleotide phosphorylation","YES" +"GenProp1495","N-end rule pathway I (prokaryotic)","YES" +"GenProp1496","Hydrogen production V","YES" +"GenProp1497","Ethanol degradation I","YES" +"GenProp1498","Superpathway of menaquinol-8 biosynthesis I","YES" +"GenProp1499","L-selenocysteine biosynthesis I (bacteria)","YES" +"GenProp1501","Allantoin degradation to ureidoglycolate I (urea producing)","NO" +"GenProp1502","NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)","YES" +"GenProp1503","L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde","YES" +"GenProp1504","Nitrate reduction X (dissimilatory, periplasmic)","NO" +"GenProp1505","Bacillithiol biosynthesis","YES" +"GenProp1506","4-Aminobutanoate degradation I","YES" +"GenProp1507","L-homocysteine biosynthesis","YES" +"GenProp1508","Violaxanthin, antheraxanthin and zeaxanthin interconversion","NO" +"GenProp1509","1D-myo-inositol hexakisphosphate biosynthesis II (mammalian)","YES" +"GenProp1510","Fatty acid beta-oxidation II (peroxisome)","YES" +"GenProp1511","D-myo-inositol-5-phosphate metabolism","PARTIAL" +"GenProp1512","Fatty acid biosynthesis initiation I","YES" +"GenProp1513","Superpathway of thiamine diphosphate biosynthesis III (eukaryotes)","PARTIAL" +"GenProp1514","D-glucarate degradation I","NO" +"GenProp1515","Succinate to cytochrome bd oxidase electron transfer","YES" +"GenProp1516","Phosphatidylcholine biosynthesis V","YES" +"GenProp1517","Ganglio-series glycosphingolipids biosynthesis","NO" +"GenProp1518","Lacto-series glycosphingolipids biosynthesis","NO" +"GenProp1520","Pentose phosphate pathway (oxidative branch) I","YES" +"GenProp1521","tRNA methylation (yeast)","YES" +"GenProp1522","Chitin degradation I (archaea)","PARTIAL" +"GenProp1523","4-Aminobutanoate degradation III","YES" +"GenProp1524","Complex N-linked glycan biosynthesis (vertebrates)","NO" +"GenProp1525","Tetrapyrrole biosynthesis II (from glycine)","YES" +"GenProp1526","Chondroitin sulfate biosynthesis","NO" +"GenProp1527","Myo-inositol degradation II","PARTIAL" +"GenProp1528","Guanine and guanosine salvage","YES" +"GenProp1529","Superpathway of fucose and rhamnose degradation","NO" +"GenProp1530","Superpathway of cholesterol biosynthesis","YES" +"GenProp1533","L-isoleucine degradation I","YES" +"GenProp1534","Kanosamine biosynthesis II","YES" +"GenProp1535","Formate to trimethylamine N-oxide electron transfer","PARTIAL" +"GenProp1536","Pyruvate decarboxylation to acetyl CoA","YES" +"GenProp1537","NADH to fumarate electron transfer","YES" +"GenProp1538","Superpathway of aromatic amino acid biosynthesis","YES" +"GenProp1539","Neolacto-series glycosphingolipids biosynthesis","NO" +"GenProp1540","Pyrimidine ribonucleosides salvage III","YES" +"GenProp1541","Superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate)","YES" +"GenProp1542","Phosphatidylethanolamine biosynthesis I","YES" +"GenProp1543","Pyruvate fermentation to acetate IV","PARTIAL" +"GenProp1544","Fatty acid beta-oxidation (peroxisome, yeast)","YES" +"GenProp1545","i antigen and I antigen biosynthesis","PARTIAL" +"GenProp1546","Sulfoquinovosyl diacylglycerol biosynthesis","YES" +"GenProp1547","Anthocyanidin modification (Arabidopsis)","YES" +"GenProp1548","D-myo-inositol (1,4,5)-trisphosphate biosynthesis","YES" +"GenProp1549","UDP-N-acetyl-alpha-D-mannosaminouronate biosynthesis","YES" +"GenProp1550","Superpathway of L-tryptophan biosynthesis","YES" +"GenProp1551","L-tryptophan degradation X (mammalian, via tryptamine)","YES" +"GenProp1552","Allopregnanolone biosynthesis","YES" +"GenProp1553","L-homoserine biosynthesis","PARTIAL" +"GenProp1554","Nitrate reduction V (assimilatory)","YES" +"GenProp1555","tRNA-uridine 2-thiolation (bacteria)","PARTIAL" +"GenProp1556","Glycolate and glyoxylate degradation II","YES" +"GenProp1557","Entner-Doudoroff pathway I","YES" +"GenProp1558","Sterol:steryl ester interconversion (yeast)","YES" +"GenProp1559","2'-Deoxy-alpha-D-ribose 1-phosphate degradation","YES" +"GenProp1560","2-Carboxy-1,4-naphthoquinol biosynthesis","PARTIAL" +"GenProp1561","Superpathway of coenzyme A biosynthesis III (mammals)","YES" +"GenProp1562","Fatty acid salvage","YES" +"GenProp1563","Glycerol-3-phosphate to cytochrome bo oxidase electron transfer","YES" +"GenProp1564","Trehalose degradation II (trehalase)","YES" +"GenProp1565","N-acetylglucosamine degradation II","YES" +"GenProp1566","D-galactonate degradation","YES" +"GenProp1567","Glycerol degradation I","YES" +"GenProp1568","Purine deoxyribonucleosides degradation II","YES" +"GenProp1569","Very long chain fatty acid biosynthesis I","YES" +"GenProp1570","N6-L-threonylcarbamoyladenosine37-modified tRNA biosynthesis","YES" +"GenProp1571","Spermine biosynthesis","YES" +"GenProp1572","L-carnitine degradation I","YES" +"GenProp1573","Sulfate activation for sulfonation","YES" +"GenProp1574","Inositol diphosphates biosynthesis","YES" +"GenProp1575","Phospholipid remodeling (phosphatidylethanolamine, yeast)","YES" +"GenProp1576","Pyrimidine ribonucleosides degradation","PARTIAL" +"GenProp1577","Biotin biosynthesis I","YES" +"GenProp1578","Methylglyoxal degradation I","YES" +"GenProp1579","4-Aminobutanoate degradation II","YES" +"GenProp1580","Homolactic fermentation","NO" +"GenProp1581","L-homoserine and L-methionine biosynthesis","YES" +"GenProp1582","Hydrogen to trimethylamine N-oxide electron transfer","PARTIAL" +"GenProp1583","Nitrate reduction VIII (dissimilatory)","PARTIAL" +"GenProp1584","L-aspartate degradation II","YES" +"GenProp1585","Superpathway of ubiquinol-8 biosynthesis (prokaryotic)","PARTIAL" +"GenProp1586","Adenosine deoxyribonucleotides de novo biosynthesis","YES" +"GenProp1587","Oleate biosynthesis II (animals and fungi)","YES" +"GenProp1588","Lipoxin biosynthesis","YES" +"GenProp1589","D-arabinose degradation I","NO" +"GenProp1590","4-Amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis","YES" +"GenProp1591","Heme degradation I","YES" +"GenProp1592","Superpathway of purine nucleotides de novo biosynthesis II","YES" +"GenProp1593","Staphyloferrin A biosynthesis","NO" +"GenProp1594","Superpathway of ergosterol biosynthesis I","YES" +"GenProp1595","Heparan sulfate biosynthesis","PARTIAL" +"GenProp1596","Superpathway of polyamine biosynthesis I","PARTIAL" +"GenProp1597","Pinolenate and coniferonate biosynthesis","YES" +"GenProp1598","Superoxide radicals degradation","YES" +"GenProp1599","Glycolysis III (from glucose)","YES" +"GenProp1600","Abscisic acid degradation by glucosylation","YES" +"GenProp1601","Superpathway of coenzyme A biosynthesis I (bacteria)","YES" +"GenProp1602","PreQ0 biosynthesis","PARTIAL" +"GenProp1603","C20 prostanoid biosynthesis","YES" +"GenProp1604","Pyridoxal 5'-phosphate salvage I","NO" +"GenProp1605","D-myo-inositol (1,4,5)-trisphosphate degradation","YES" +"GenProp1606","Octopamine biosynthesis","YES" +"GenProp1607","Purine deoxyribonucleosides salvage","PARTIAL" +"GenProp1608","NADH to cytochrome bd oxidase electron transfer I","YES" +"GenProp1609","Ergosterol biosynthesis I","PARTIAL" +"GenProp1610","Spermine and spermidine degradation I","YES" +"GenProp1611","Xanthine and xanthosine salvage","YES" +"GenProp1612","Gluconeogenesis III","YES" +"GenProp1613","Formate assimilation into 5,10-methylenetetrahydrofolate","YES" +"GenProp1614","UMP biosynthesis II","YES" +"GenProp1615","Ammonia assimilation cycle III","YES" +"GenProp1616","Tetrahydrofolate biosynthesis","YES" +"GenProp1617","Pyrimidine deoxyribonucleotides de novo biosynthesis I","PARTIAL" +"GenProp1619","L-histidine degradation I","YES" +"GenProp1620","Pyruvate fermentation to acetate VIII","YES" +"GenProp1621","Pyrimidine deoxyribonucleotides de novo biosynthesis II","NO" +"GenProp1622","Mycocyclosin biosynthesis","PARTIAL" +"GenProp1623","Anhydromuropeptides recycling I","PARTIAL" +"GenProp1624","Fructoselysine and psicoselysine degradation","YES" +"GenProp1625","Lipoate biosynthesis and incorporation III (Bacillus)","YES" +"GenProp1626","L-alanine degradation I","YES" +"GenProp1627","Cardiolipin biosynthesis I","PARTIAL" +"GenProp1628","5-Aminoimidazole ribonucleotide biosynthesis II","YES" +"GenProp1629","Propanoyl CoA degradation I","YES" +"GenProp1630","Aminomethylphosphonate degradation","PARTIAL" +"GenProp1631","Superpathway of pyrimidine deoxyribonucleosides degradation","YES" +"GenProp1632","Erythro-tetrahydrobiopterin biosynthesis I","YES" +"GenProp1633","Pyridoxal 5'-phosphate biosynthesis I","PARTIAL" +"GenProp1634","CMP phosphorylation","YES" +"GenProp1635","Superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis","PARTIAL" +"GenProp1636","D-galacturonate degradation I","YES" +"GenProp1637","Aerobic respiration I (cytochrome c)","YES" +"GenProp1638","(E,E)-4,8,12-trimethyltrideca-1,3,7,11-tetraene biosynthesis","YES" +"GenProp1639","Sucrose degradation II (sucrose synthase)","YES" +"GenProp1640","L-serine biosynthesis","YES" +"GenProp1641","NADH to cytochrome bo oxidase electron transfer II","YES" +"GenProp1643","Chorismate biosynthesis I","YES" +"GenProp1644","Mineralocorticoid biosynthesis","YES" +"GenProp1645","Zeaxanthin biosynthesis","YES" +"GenProp1646","L-threonine degradation II","PARTIAL" +"GenProp1647","Superpathway of lipopolysaccharide biosynthesis","YES" +"GenProp1648","Colanic acid building blocks biosynthesis","YES" +"GenProp1649","Dehydro-D-arabinono-1,4-lactone biosynthesis","YES" +"GenProp1650","Guanosine ribonucleotides de novo biosynthesis","YES" +"GenProp1651","Lipid A-core biosynthesis","PARTIAL" +"GenProp1652","Urate conversion to allantoin I","PARTIAL" +"GenProp1653","Leukotriene biosynthesis","PARTIAL" +"GenProp1654","Homocysteine and cysteine interconversion","YES" +"GenProp1655","L-methionine degradation III","YES" +"GenProp1656","Xylose degradation I","YES" +"GenProp1657","Ethylene biosynthesis I (plants)","YES" +"GenProp1658","NAD salvage pathway III","NO" +"GenProp1660","L-asparagine biosynthesis III (tRNA-dependent)","YES" +"GenProp1661","D-galactose degradation V (Leloir pathway)","YES" +"GenProp1662","L-lactaldehyde degradation (aerobic)","YES" +"GenProp1663","Heme b biosynthesis IV (Gram-positive bacteria)","YES" +"GenProp1664","Gamma-glutamyl cycle","YES" +"GenProp1665","Sphingolipid biosynthesis (mammals)","PARTIAL" +"GenProp1666","Glucocorticoid biosynthesis","YES" +"GenProp1667","L-alanine biosynthesis I","YES" +"GenProp1668","Gadusol biosynthesis","YES" +"GenProp1669","CO2 fixation into oxaloacetate (anaplerotic)","YES" +"GenProp1670","Di-trans,poly-cis-undecaprenyl phosphate biosynthesis","YES" +"GenProp1671","Ceramide de novo biosynthesis","PARTIAL" +"GenProp1672","Hydrogen to fumarate electron transfer","YES" +"GenProp1673","L-leucine degradation I","YES" +"GenProp1674","Thiamine formation from pyrithiamine and oxythiamine (yeast)","YES" +"GenProp1675","Superpathway of D-glucarate and D-galactarate degradation","PARTIAL" +"GenProp1676","Nitrate reduction IX (dissimilatory)","NO" +"GenProp1677","NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)","YES" +"GenProp1678","Beta-alanine biosynthesis IV","YES" +"GenProp1679","L-phenylalanine degradation I (aerobic)","PARTIAL" +"GenProp1680","Fucose degradation","NO" +"GenProp1681","L-cysteine degradation III","YES" +"GenProp1682","Factor 420 polyglutamylation","YES" +"GenProp1683","Epoxysqualene biosynthesis","YES" +"GenProp1684","Kdo transfer to lipid IVA I","YES" +"GenProp1685","Hydrogen sulfide biosynthesis II (mammalian)","YES" +"GenProp1686","Heme b biosynthesis II (anaerobic)","PARTIAL" +"GenProp1687","2-Methylcitrate cycle I","PARTIAL" +"GenProp1688","Heme degradation VII","YES" +"GenProp1689","Superpathway of 5-aminoimidazole ribonucleotide biosynthesis","YES" +"GenProp1690","Glycolipid desaturation","YES" +"GenProp1691","Superpathway of glycolysis and the Entner-Doudoroff pathway","YES" +"GenProp1692","D-myo-inositol (1,4,5,6)-tetrakisphosphate biosynthesis","YES" +"GenProp1693","TCA cycle III (animals)","PARTIAL" +"GenProp1694","Superpathway of demethylmenaquinol-8 biosynthesis I","YES" +"GenProp1695","Serotonin and melatonin biosynthesis","PARTIAL" +"GenProp1696","Curcumin degradation","YES" +"GenProp1697","Thiazole biosynthesis III (eukaryotes)","NO" +"GenProp1698","L-phenylalanine degradation III","YES" +"GenProp1699","Glycosaminoglycan-protein linkage region biosynthesis","NO" +"GenProp1701","Tetrapyrrole biosynthesis I (from glutamate)","YES" +"GenProp1702","Thiamine diphosphate biosynthesis IV (eukaryotes)","YES" +"GenProp1703","Retinol biosynthesis","NO" +"GenProp1704","Trans, trans-farnesyl diphosphate biosynthesis","YES" +"GenProp1705","Sedoheptulose bisphosphate bypass","YES" +"GenProp1706","Protein N-glycosylation processing phase (yeast)","YES" +"GenProp1707","tRNA splicing II","YES" +"GenProp1708","L-phenylalanine biosynthesis I","YES" +"GenProp1709","Trichome monoterpenes biosynthesis","YES" +"GenProp1710","Superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass","YES" +"GenProp1711","Molybdenum cofactor biosynthesis","PARTIAL" +"GenProp1712","Mucin core 1 and core 2 O-glycosylation","NO" +"GenProp1713","UDP-beta-L-rhamnose biosynthesis","YES" +"GenProp1715","Ethanol degradation II","YES" +"GenProp1716","Superpathay of heme b biosynthesis from glutamate","YES" +"GenProp1717","Fatty acid beta-oxidation I","YES" +"GenProp1718","Phospholipid remodeling (phosphatidylcholine, yeast)","YES" +"GenProp1719","L-methionine salvage from L-homocysteine","YES" +"GenProp1720","Superpathway of b heme biosynthesis from glycine","YES" +"GenProp1721","Glutathione-peroxide redox reactions","YES" +"GenProp1722","Chitin degradation to ethanol","YES" +"GenProp1723","Conversion of succinate to propanoate","PARTIAL" +"GenProp1724","Chlorophyll a biosynthesis I","YES" +"GenProp1725","Thiamine diphosphate biosynthesis II (Bacillus)","YES" +"GenProp1726","Starch degradation II","NO" +"GenProp1727","4-Aminobenzoate biosynthesis","PARTIAL" +"GenProp1728","Thyroid hormone biosynthesis","PARTIAL" +"GenProp1729","Glycerol-3-phosphate to hydrogen peroxide electron transport","PARTIAL" +"GenProp1730","Inosine-5'-phosphate biosynthesis I","YES" +"GenProp1731","3-Dehydroquinate biosynthesis I","YES" +"GenProp1732","Pentose phosphate pathway (oxidative branch) II","NO" +"GenProp1733","Putrescine biosynthesis II","PARTIAL" +"GenProp1734","Flavin biosynthesis I (bacteria and plants)","YES" +"GenProp1735","Archaeosine biosynthesis I","PARTIAL" +"GenProp1736","NADH repair","YES" +"GenProp1737","CMP-N-acetylneuraminate biosynthesis I (eukaryotes)","YES" +"GenProp1739","Ent-kaurene biosynthesis I","YES" +"GenProp1740","Pregnenolone biosynthesis","YES" +"GenProp1741","Adenine and adenosine salvage V","YES" +"GenProp1742","Androgen biosynthesis","YES" +"GenProp1743","UDP-alpha-D-glucose biosynthesis I","YES" +"GenProp1744","Ubiquinol-8 biosynthesis (prokaryotic)","YES" +"GenProp1745","GA12 biosynthesis","YES" +"GenProp1746","Alkylnitronates degradation","YES" +"GenProp1747","Photorespiration","YES" +"GenProp1748","Phosphopantothenate biosynthesis I","YES" +"GenProp1749","Superpathway of acetate utilization and formation","YES" +"GenProp1750","Glycerol-3-phosphate shuttle","PARTIAL" +"GenProp1751","NADH to cytochrome bo oxidase electron transfer I","YES" +"GenProp1752","Superpathway of purine deoxyribonucleosides degradation","YES" +"GenProp1753","Inosine 5'-phosphate degradation","YES" +"GenProp1754","Protein ubiquitination","YES" +"GenProp1755","PpGpp biosynthesis","YES" +"GenProp1756","Poly(3-O-beta-D-glucopyranosyl-N-acetylgalactosamine 1-phosphate) wall teichoic acid biosynthesis","YES" +"GenProp1757","Inosine-5'-phosphate biosynthesis II","YES" +"GenProp1758","3-Phosphoinositide biosynthesis","PARTIAL" +"GenProp1759","Spermidine hydroxycinnamic acid conjugates biosynthesis","YES" +"GenProp1760","Superpathway of gibberellin GA12 biosynthesis","YES" +"GenProp1761","Linoleate biosynthesis I (plants)","YES" +"GenProp1762","Ethanolamine utilization","YES" +"GenProp1763","Superpathway of carotenoid biosynthesis in plants","YES" +"GenProp1764","Flavin biosynthesis IV (mammalian)","YES" +"GenProp2002","Fibrinogen","NO" +"GenProp2007","Complement activation, common pathway 1","NO" +"GenProp2010","Fibrinolysis","NO" +"GenProp2011","Eukaryote 20S proteasome","NO" +"GenProp2012","19S proteasome cap","NO" +"GenProp2013","26S proteasome","NO" +"GenProp2014","Immunoproteasome","NO" +"GenProp2015","Thymoproteasome","NO" +"GenProp2016","Mammalian spermatoproteasome","NO" +"GenProp2017","Gamma secretase","NO" +"GenProp2018","Initiator caspases of the apoptosis extrinsic pathway","NO" +"GenProp2019","Executor caspases of apoptosis","NO" +"GenProp2021","Apoptosome","NO" +"GenProp2026","KICSTOR complex","NO" +"GenProp2028","GATOR1 complex","YES" +"GenProp2029","GATOR2 complex","NO" +"GenProp2030","mTORC1 complex","NO" +"GenProp2031","Ragulator complex","NO" +"GenProp2032","Rag complex","NO" +"GenProp2033","mTORC1 activation","NO" +"GenProp2034","eIF4F complex","NO" +"GenProp2035","mTORC1 pathway","NO" +"GenProp2036","Nuclear pore complex, vertebrate","NO" +"GenProp2037","Nuclear pore subcomplex Nup107-160","NO" +"GenProp2038","Microsomal signal peptidase complex","PARTIAL" +"GenProp2039","Mitochondrial protein processing","NO" +"GenProp2040","Mitochondrial inner membrane peptidase complex","NO" +"GenProp2043","Nuclear pore complex 107-120, Schizosaccharomyces","NO" +"GenProp2047","COP9 Signalosome, eukaryote","NO" +"GenProp2048","General transcription factor IIH","PARTIAL" +"GenProp2049","CDK-activating kinase (CAK) complex","NO" +"GenProp2050","TFIIH basal transcription factor","NO" +"GenProp2052","SAGA-like (SLIK) complex","NO" +"GenProp2053","SALSA complex","NO" +"GenProp2054","TFIID complex","NO" +"GenProp2055","ADA complex","NO" +"GenProp2057","TFTC-HAT complex","NO" +"GenProp2059","Set1B histone H3-Lys4 methyltransferase complex","NO" +"GenProp2060","COMPASS methyltransferase complex","NO" +"GenProp2063","NSL complex","NO" +"GenProp2064","MSL complex","NO" +"GenProp2066","RuvB-like helicase","NO" +"GenProp2067","MLL-HCF complex","NO" +"GenProp2069","THAP1/THAP3-HCFC1-OGT complex","NO" +"GenProp2080","BAF53 complex","NO" +"GenProp2081","npBAF complex","NO" +"GenProp2084","SWI/SNF complex","NO" +"GenProp2085","Renin-Angiotensin system","NO" +"GenProp2086","Pro-insulin activation","NO" +"GenProp2087","Proglucagon activation","NO" +"GenProp2088","Insulin signaling pathway - glycogenesis","NO" +"GenProp2089","Glucagon signaling pathway for glycogenolysis","NO" +"GenProp2090","Insulin signaling pathway - glucose uptake","NO" +"GenProp2092","GLP-1 signalled increase in cAMP","NO" +"GenProp2093","GIP signalled increase in cAMP","NO" +"GenProp2094","PACAP signalled increase in cAMP","NO" +"GenProp2095","Insulin secretion via PKA","NO" +"GenProp2096","Insulin secretion via PKC","NO" +"GenProp2097","Insulin release from secretory granules","NO" +"GenProp2098","Insulin secretion via IP3","NO" +"GenProp2099","Insulin secretion via glucose","NO"
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/pathways_and_systems/ERZ21819995_FASTA_kegg_pathways.csv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,269 @@ +"module_accession","completeness","pathway_name","pathway_class","matching_ko","missing_ko" +"M00001","100.0","Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate","Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism","K01623,K01810,K01689,K01803,K00927,K15633,K00134,K00844,K00850,K00873","" +"M00002","100.0","Glycolysis, core module involving three-carbon compounds","Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism","K01689,K01803,K00927,K00134,K15633,K00873","" +"M00003","100.0","Gluconeogenesis, oxaloacetate => fructose-6P","Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism","K01623,K03841,K01689,K01803,K00927,K15633,K01596,K00134","" +"M00004","100.0","Pentose phosphate pathway (Pentose phosphate cycle)","Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism","K01810,K00615,K00033,K01783,K00616,K01057,K01807,K00036","" +"M00005","100.0","PRPP biosynthesis, ribose 5P => PRPP","Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism","K00948","" +"M00006","100.0","Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P","Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism","K01057,K00036,K00033","" +"M00007","100.0","Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P","Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism","K00615,K00616,K01783,K01807","" +"M00008","100.0","Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate","Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism","K01690,K01057,K00036,K01625","" +"M00009","100.0","Citrate cycle (TCA cycle, Krebs cycle)","Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism","K00241,K00024,K00031,K01676,K00164,K01647,K01902,K01903,K01681,K00658,K00239,K00240,K00382,K00242","" +"M00010","100.0","Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate","Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism","K01681,K00031,K01647","" +"M00011","100.0","Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate","Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism","K00241,K00024,K01676,K00239,K00164,K01902,K01903,K00658,K00240,K00382,K00242","" +"M00012","100.0","Glyoxylate cycle","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K01638,K01681,K01637,K00024,K01647","" +"M00015","100.0","Proline biosynthesis, glutamate => proline","Pathway modules; Amino acid metabolism; Arginine and proline metabolism","K00286,K00931,K00147","" +"M00016","100.0","Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine","Pathway modules; Amino acid metabolism; Lysine metabolism","K00928,K01714,K00215,K01586,K00821,K01439,K00133,K01778,K00674","" +"M00017","100.0","Methionine biosynthesis, apartate => homoserine => methionine","Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism","K01739,K00928,K01760,K00133,K00003,K00651,K00548","" +"M00018","100.0","Threonine biosynthesis, aspartate => homoserine => threonine","Pathway modules; Amino acid metabolism; Serine and threonine metabolism","K00928,K00872,K00133,K00003,K01733","" +"M00019","100.0","Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine","Pathway modules; Amino acid metabolism; Branched-chain amino acid metabolism","K00826,K00053,K01653,K01652,K01687","" +"M00020","100.0","Serine biosynthesis, glycerate-3P => serine","Pathway modules; Amino acid metabolism; Serine and threonine metabolism","K00058,K01079,K00831","" +"M00021","100.0","Cysteine biosynthesis, serine => cysteine","Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism","K00640,K01738","" +"M00022","100.0","Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate","Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism","K00891,K01626,K00014,K01735,K01736,K03785,K00800","" +"M00023","100.0","Tryptophan biosynthesis, chorismate => tryptophan","Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism","K01609,K01817,K01657,K01695,K01658,K01696,K00766","" +"M00024","100.0","Phenylalanine biosynthesis, chorismate => phenylalanine","Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism","K01850,K00838,K04518","" +"M00025","100.0","Tyrosine biosynthesis, chorismate => tyrosine","Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism","K01850,K00838,K04517","" +"M00026","100.0","Histidine biosynthesis, PRPP => histidine","Pathway modules; Amino acid metabolism; Histidine metabolism","K00013,K01693,K02501,K02502,K01496,K01523,K01814,K00765,K04486,K00817,K02500","" +"M00027","100.0","GABA (gamma-Aminobutyrate) shunt","Pathway modules; Amino acid metabolism; Other amino acid metabolism","K07250,K00135,K01580","" +"M00028","100.0","Ornithine biosynthesis, glutamate => ornithine","Pathway modules; Amino acid metabolism; Arginine and proline metabolism","K00930,K00821,K00618,K00145,K01438","" +"M00031","100.0","Lysine biosynthesis, mediated by LysW, 2-aminoadipate => lysine","Pathway modules; Amino acid metabolism; Lysine metabolism","K05826","" +"M00034","100.0","Methionine salvage pathway","Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism","K01611,K01243,K00789,K00838,K00797,K08963,K08967,K00899,K08964,K09880","" +"M00035","100.0","Methionine degradation","Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism","K00789,K01697,K00558,K01251","" +"M00044","100.0","Tyrosine degradation, tyrosine => homogentisate","Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism","K00457,K01800,K01555,K00451,K00838","" +"M00045","100.0","Histidine degradation, histidine => N-formiminoglutamate => glutamate","Pathway modules; Amino acid metabolism; Histidine metabolism","K01468,K01712,K01745,K01479","" +"M00046","100.0","Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate","Pathway modules; Nucleotide metabolism; Pyrimidine metabolism","K17723,K17722,K01464,K01431","" +"M00048","100.0","Inosine monophosphate biosynthesis, PRPP + glutamine => IMP","Pathway modules; Nucleotide metabolism; Purine metabolism","K11175,K01952,K01923,K01756,K01933,K01945,K00602,K00764","" +"M00049","100.0","Adenine ribonucleotide biosynthesis, IMP => ADP,ATP","Pathway modules; Nucleotide metabolism; Purine metabolism","K00940,K01939,K00939,K01756","" +"M00050","100.0","Guanine ribonucleotide biosynthesis IMP => GDP,GTP","Pathway modules; Nucleotide metabolism; Purine metabolism","K00088,K00940,K01951,K00942","" +"M00052","100.0","Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP","Pathway modules; Nucleotide metabolism; Pyrimidine metabolism","K00940,K09903,K01937","" +"M00063","100.0","CMP-KDO biosynthesis","Pathway modules; Glycan metabolism; Lipopolysaccharide metabolism","K01627,K00979,K03270,K06041","" +"M00082","100.0","Fatty acid biosynthesis, initiation","Pathway modules; Lipid metabolism; Fatty acid metabolism","K00665,K11262","" +"M00083","100.0","Fatty acid biosynthesis, elongation","Pathway modules; Lipid metabolism; Fatty acid metabolism","K00665","" +"M00086","100.0","beta-Oxidation, acyl-CoA synthesis","Pathway modules; Lipid metabolism; Fatty acid metabolism","K01897","" +"M00087","100.0","beta-Oxidation","Pathway modules; Lipid metabolism; Fatty acid metabolism","K00632,K07516,K01692,K00232","" +"M00088","100.0","Ketone body biosynthesis, acetyl-CoA => acetoacetate/3-hydroxybutyrate/acetone","Pathway modules; Lipid metabolism; Lipid metabolism","K01641,K00626,K01640","" +"M00089","100.0","Triacylglycerol biosynthesis","Pathway modules; Lipid metabolism; Lipid metabolism","K00655,K15728,K11155,K13507","" +"M00091","100.0","Phosphatidylcholine (PC) biosynthesis, PE => PC","Pathway modules; Lipid metabolism; Lipid metabolism","K00551","" +"M00093","100.0","Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE","Pathway modules; Lipid metabolism; Lipid metabolism","K17103,K01613,K00981","" +"M00095","100.0","C5 isoprenoid biosynthesis, mevalonate pathway","Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis","K00021,K01641,K01823,K00938,K00626,K01597,K00869","" +"M00096","100.0","C5 isoprenoid biosynthesis, non-mevalonate pathway","Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis","K03527,K01770,K01662,K00099,K00919,K03526,K00991,K01823","" +"M00097","100.0","beta-Carotene biosynthesis, GGAP => beta-carotene","Pathway modules; Biosynthesis of terpenoids and polyketides; Other terpenoid biosynthesis","K09835,K15744,K02293,K02291,K00514,K06443","" +"M00100","100.0","Sphingosine degradation","Pathway modules; Lipid metabolism; Lipid metabolism","K04718,K01634","" +"M00112","100.0","Tocopherol/tocotorienol biosynthesis","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K09833,K05928,K09834,K18534","" +"M00115","100.0","NAD biosynthesis, aspartate => NAD","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K00767,K03517,K00969,K00278,K01916","" +"M00116","100.0","Menaquinone biosynthesis, chorismate => menaquinol","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K01911,K03183,K02551,K02549,K19222,K08680,K02552,K02548,K01661","" +"M00118","100.0","Glutathione biosynthesis, glutamate => glutathione","Pathway modules; Amino acid metabolism; Other amino acid metabolism","K21456,K11205,K11204","" +"M00119","100.0","Pantothenate biosynthesis, valine/L-aspartate => pantothenate","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K00826,K00606,K00077","" +"M00120","100.0","Coenzyme A biosynthesis, pantothenate => CoA","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K00867,K01922,K01598,K00954,K00859","" +"M00121","100.0","Heme biosynthesis, plants and bacteria, glutamate => heme","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K01845,K01885,K01698,K01719,K01749,K00231,K02492,K01772,K00228,K01599","" +"M00122","100.0","Cobalamin biosynthesis, cobinamide => cobalamin","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K00798,K02232,K02225,K02231","" +"M00123","100.0","Biotin biosynthesis, pimeloyl-ACP/CoA => biotin","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K01935,K00652,K01012,K00833","" +"M00125","100.0","Riboflavin biosynthesis, GTP => riboflavin/FMN/FAD","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K01497,K20862,K11752","" +"M00126","100.0","Tetrahydrofolate biosynthesis, GTP => THF","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K00796,K11754,K00287,K01077,K01633,K01495,K00950","" +"M00127","100.0","Thiamine biosynthesis, AIR => thiamine-P/thiamine-2P","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K03149,K03150","" +"M00133","100.0","Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine","Pathway modules; Amino acid metabolism; Polyamine biosynthesis","K01584,K01480","" +"M00134","100.0","Polyamine biosynthesis, arginine => ornithine => putrescine","Pathway modules; Amino acid metabolism; Polyamine biosynthesis","K01476,K01581","" +"M00135","100.0","GABA biosynthesis, eukaryotes, putrescine => GABA","Pathway modules; Amino acid metabolism; Polyamine biosynthesis","K00274,K00128,K00657","" +"M00140","100.0","C1-unit interconversion, prokaryotes","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K01938,K01491,K00600","" +"M00144","100.0","NADH","Pathway modules; Energy metabolism; ATP synthesis","K00336,K00341,K00343,K00337,K00340,K00334,K00332,K00331,K00338,K00342,K00339,K00335,K00330,K00333","" +"M00145","100.0","NAD(P)H","Pathway modules; Energy metabolism; ATP synthesis","K05580,K05573,K05578,K05577,K05581,K05574,K05582,K05585,K05576,K05575,K05572,K05584,K05583,K05579","" +"M00149","100.0","Succinate dehydrogenase, prokaryotes","Pathway modules; Energy metabolism; ATP synthesis","K00242,K00239,K00241,K00240","" +"M00151","100.0","Cytochrome bc1 complex respiratory unit","Pathway modules; Energy metabolism; ATP synthesis","K00412,K00411,K00413","" +"M00155","100.0","Cytochrome c oxidase, prokaryotes","Pathway modules; Energy metabolism; ATP synthesis","K02276,K02277,K02275,K02274","" +"M00157","100.0","F-type ATPase, prokaryotes and chloroplasts","Pathway modules; Energy metabolism; ATP synthesis","K02110,K02109,K02111,K02114,K02113,K02112,K02115,K02108","" +"M00159","100.0","V/A-type ATPase, prokaryotes","Pathway modules; Energy metabolism; ATP synthesis","K02123,K02122,K02120,K02119,K02124,K02107,K02121,K02118,K02117","" +"M00161","100.0","Photosystem II","Pathway modules; Energy metabolism; Photosynthesis","K02707,K02705,K02708,K02706,K02703,K02704","" +"M00162","100.0","Cytochrome b6f complex","Pathway modules; Energy metabolism; ATP synthesis","K02634,K02642,K02640,K02635,K03689,K02636,K02643,K02637","" +"M00163","100.0","Photosystem I","Pathway modules; Energy metabolism; Photosynthesis","K02690,K02694,K02689,K02692,K02691,K02693","" +"M00165","100.0","Reductive pentose phosphate cycle (Calvin cycle)","Pathway modules; Energy metabolism; Carbon fixation","K01623,K00150,K03841,K00927,K01602,K00615,K00855,K11532,K01807,K01601","" +"M00166","100.0","Reductive pentose phosphate cycle, ribulose-5P => glyceraldehyde-3P","Pathway modules; Energy metabolism; Carbon fixation","K00855,K00150,K00927,K01602,K01601","" +"M00167","100.0","Reductive pentose phosphate cycle, glyceraldehyde-3P => ribulose-5P","Pathway modules; Energy metabolism; Carbon fixation","K01623,K03841,K11532,K01807,K00615","" +"M00168","100.0","CAM (Crassulacean acid metabolism), dark","Pathway modules; Energy metabolism; Carbon fixation","K00024,K01595","" +"M00169","100.0","CAM (Crassulacean acid metabolism), light","Pathway modules; Energy metabolism; Carbon fixation","K00029,K01006","" +"M00176","100.0","Assimilatory sulfate reduction, sulfate => H2S","Pathway modules; Energy metabolism; Sulfur metabolism","K00958,K00390,K00380,K00381,K00860","" +"M00307","100.0","Pyruvate oxidation, pyruvate => acetyl-CoA","Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism","K00382,K00163,K00627","" +"M00338","100.0","Cysteine biosynthesis, homocysteine + serine => cysteine","Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism","K01697,K01758","" +"M00345","100.0","Formaldehyde assimilation, ribulose monophosphate pathway","Pathway modules; Energy metabolism; Methane metabolism","K08093,K00850,K01624,K08094","" +"M00346","100.0","Formaldehyde assimilation, serine pathway","Pathway modules; Energy metabolism; Methane metabolism","K14067,K01689,K00024,K11529,K00830,K01595,K00018,K00600,K08692,K08691","" +"M00364","100.0","C10-C20 isoprenoid biosynthesis, bacteria","Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis","K01823,K00795","" +"M00367","100.0","C10-C20 isoprenoid biosynthesis, non-plant eukaryotes","Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis","K01823,K00804,K00787","" +"M00373","100.0","Ethylmalonyl pathway","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K01965,K05606,K01966,K01847","" +"M00378","100.0","F420 biosynthesis","Pathway modules; Energy metabolism; Methane metabolism","K11781,K11780","" +"M00432","100.0","Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate","Pathway modules; Amino acid metabolism; Branched-chain amino acid metabolism","K01702,K01649,K00052","" +"M00527","100.0","Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine","Pathway modules; Amino acid metabolism; Lysine metabolism","K00928,K10206,K01714,K00133,K01778,K00215,K01586","" +"M00531","100.0","Assimilatory nitrate reduction, nitrate => ammonia","Pathway modules; Energy metabolism; Nitrogen metabolism","K00367,K00366","" +"M00532","100.0","Photorespiration","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K00281,K00382,K00605,K02437","" +"M00535","100.0","Isoleucine biosynthesis, pyruvate => 2-oxobutanoate","Pathway modules; Amino acid metabolism; Branched-chain amino acid metabolism","K01703,K09011,K01704,K00052","" +"M00549","100.0","Nucleotide sugar biosynthesis, glucose => UDP-glucose","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K00963,K00844,K01835","" +"M00552","100.0","D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K00883,K01684,K00927,K01631,K00134","" +"M00554","100.0","Nucleotide sugar biosynthesis, galactose => UDP-galactose","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K00965,K00849","" +"M00555","100.0","Betaine biosynthesis, choline => betaine","Pathway modules; Amino acid metabolism; Serine and threonine metabolism","K00130,K00108","" +"M00565","100.0","Trehalose biosynthesis, D-glucose 1P => trehalose","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K01214,K01236,K00703,K00975,K00700,K06044","" +"M00569","100.0","Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA","Pathway modules; Xenobiotics biodegradation; Aromatics degradation","K00446,K04073,K01666,K10216,K02554","" +"M00570","100.0","Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine","Pathway modules; Amino acid metabolism; Branched-chain amino acid metabolism","K00826,K00053,K01754,K01653,K01652,K01687","" +"M00579","100.0","Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate","Pathway modules; Energy metabolism; Carbon fixation","K13788,K00925","" +"M00580","100.0","Pentose phosphate pathway, archaea, fructose 6P => ribose 5P","Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism","K08093,K01807,K08094","" +"M00597","100.0","Anoxygenic photosystem II","Pathway modules; Energy metabolism; Photosynthesis","K08928,K08929","" +"M00631","100.0","D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K00874,K01685,K00041,K01812,K01625","" +"M00632","100.0","Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K00965,K00849,K01784,K01785","" +"M00741","100.0","Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K01965,K05606,K01966,K01847","" +"M00745","100.0","Imipenem resistance, repression of porin OprD","Signature modules; Gene set; Drug resistance","K07644,K07665","" +"M00763","100.0","Ornithine biosynthesis, mediated by LysW, glutamate => ornithine","Pathway modules; Amino acid metabolism; Arginine and proline metabolism","K05826","" +"M00793","100.0","dTDP-L-rhamnose biosynthesis","Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis","K00973,K00067,K01790,K01710","" +"M00844","100.0","Arginine biosynthesis, ornithine => arginine","Pathway modules; Amino acid metabolism; Arginine and proline metabolism","K01940,K01755,K00611","" +"M00846","100.0","Siroheme biosynthesis, glutamate => siroheme","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K02302,K02492,K01885,K01698,K01749,K01845,K01719","" +"M00854","100.0","Glycogen biosynthesis, glucose-1P => glycogen/starch","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K00975,K00703,K00700","" +"M00855","100.0","Glycogen degradation, glycogen => glucose-6P","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K01196,K00688,K01835","" +"M00868","100.0","Heme biosynthesis, animals and fungi, glycine => heme","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K00643,K01698,K01749,K00231,K01719,K01772,K00228,K01599","" +"M00880","100.0","Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K03639,K03831,K03750,K03635,K03637","" +"M00055","96.15","N-glycan precursor biosynthesis","Pathway modules; Glycan metabolism; Glycan biosynthesis","K03846,K03847,K00729,K03844,K01001,K03848,K03849,K03850,K03843,K03845,K07441,K03842","K07432" +"M00036","94.44","Leucine degradation, leucine => acetoacetate + acetyl-CoA","Pathway modules; Amino acid metabolism; Branched-chain amino acid metabolism","K00826,K00253,K00166,K00167,K01968,K01640,K00382,K13766,K01969","K09699" +"M00051","94.44","Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP","Pathway modules; Nucleotide metabolism; Pyrimidine metabolism","K01956,K00609,K01465,K01955,K00254,K00762,K01591","K00610" +"M00173","90.0","Reductive citrate cycle (Arnon-Buchanan cycle)","Pathway modules; Energy metabolism; Carbon fixation","K00175,K00241,K00024,K00031,K01676,K00239,K00174,K01595,K01903,K01681,K01902,K00240,K00242,K01007,K03737","K15230,K15231" +"M00060","88.89","KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type","Pathway modules; Glycan metabolism; Lipopolysaccharide metabolism","K00912,K00748,K02517,K02535,K02536,K00677,K02527,K03269","K02560" +"M00117","88.89","Ubiquinone biosynthesis, prokaryotes, chorismate => ubiquinone","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K03185,K03183,K03181,K03186,K00568,K03182,K03184,K03179","K18800" +"M00866","88.89","KDO2-lipid A biosynthesis, Raetz pathway, non-LpxL-LpxM type","Pathway modules; Glycan metabolism; Lipopolysaccharide metabolism","K00912,K00748,K02517,K02535,K02536,K00677,K02527,K03269","K09778" +"M00053","87.5","Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP => dCDP/dCTP,dTDP/dTTP","Pathway modules; Nucleotide metabolism; Pyrimidine metabolism","K00560,K00940,K01494,K01520,K00524,K00943","K00527" +"M00878","85.71","Phenylacetate degradation, phenylaxetate => acetyl-CoA/succinyl-CoA","Pathway modules; Xenobiotics biodegradation; Aromatics degradation","K01912,K02610,K00074,K02618,K01692,K02609,K02611,K15866,K02612,K02613","K02615" +"M00072","83.33","N-glycosylation by oligosaccharyltransferase","Pathway modules; Glycan metabolism; Glycan biosynthesis","K12669,K12670,K00730,K12667,K07151,K12666","K12668" +"M00433","83.33","Lysine biosynthesis, 2-oxoglutarate => 2-oxoadipate","Pathway modules; Amino acid metabolism; Lysine metabolism","K01705,K05824,K01655","K17450" +"M00526","83.33","Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine","Pathway modules; Amino acid metabolism; Lysine metabolism","K00928,K01714,K00133,K00215,K01586","K03340" +"M00572","83.33","Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K00647,K02372,K00059,K00208,K02169","K02170" +"M00029","80.0","Urea cycle","Pathway modules; Amino acid metabolism; Arginine and proline metabolism","K01476,K01940,K01755,K00611","K01948" +"M00061","80.0","D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K01686,K01812,K01625,K00874","K00040" +"M00099","80.0","Sphingosine biosynthesis","Pathway modules; Lipid metabolism; Lipid metabolism","K04708,K12349,K04712,K00654","K04709" +"M00577","80.0","Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K01935,K00652,K01012,K00833","K01906" +"M00595","80.0","Thiosulfate oxidation by SOX complex, thiosulfate => sulfate","Pathway modules; Energy metabolism; Sulfur metabolism","K22622,K17226,K17227,K17224,K17222","K17223" +"M00030","75.0","Lysine biosynthesis, AAA pathway, 2-oxoglutarate => 2-aminoadipate => lysine","Pathway modules; Amino acid metabolism; Lysine metabolism","K01655,K05824,K00290,K00143,K00838,K01705","K00293,K17450" +"M00042","75.0","Catecholamine biosynthesis, tyrosine => dopamine => noradrenaline => adrenaline","Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism","K00505,K00503,K01593","K00553" +"M00094","75.0","Ceramide biosynthesis","Pathway modules; Lipid metabolism; Lipid metabolism","K04708,K04712,K00654","K04709" +"M00172","75.0","C4-dicarboxylic acid cycle, NADP - malic enzyme type","Pathway modules; Energy metabolism; Carbon fixation","K01595,K00029,K01006","K00051" +"M00308","75.0","Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P","Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism","K00134,K01625,K00874,K00927","K05308" +"M00344","75.0","Formaldehyde assimilation, xylulose monophosphate pathway","Pathway modules; Energy metabolism; Methane metabolism","K03841,K01624,K00863","K17100" +"M00366","75.0","C10-C20 isoprenoid biosynthesis, plants","Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis","K01823,K13789,K00787","K14066" +"M00376","75.0","3-Hydroxypropionate bi-cycle","Pathway modules; Energy metabolism; Carbon fixation","K08691,K09709,K14449","K14470" +"M00417","75.0","Cytochrome o ubiquinol oxidase","Pathway modules; Energy metabolism; ATP synthesis","K02300,K02299,K02297","K02298" +"M00568","75.0","Catechol ortho-cleavage, catechol => 3-oxoadipate","Pathway modules; Xenobiotics biodegradation; Aromatics degradation","K03381,K01055,K01856","K03464" +"M00651","75.0","Vancomycin resistance, D-Ala-D-Lac type","Signature modules; Gene set; Drug resistance","K18344,K07260,K18346","K18345" +"M00790","75.0","Pyrrolnitrin biosynthesis, tryptophan => pyrrolnitrin","Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other secondary metabolites","K19982,K14266,K14257","K19981" +"M00849","75.0","C5 isoprenoid biosynthesis, mevalonate pathway, archaea","Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis","K00021,K01641,K00626,K01823,K00869","K06981,K17942" +"M00874","75.0","Fatty acid biosynthesis in mitochondria, fungi","Pathway modules; Lipid metabolism; Fatty acid metabolism","K00645,K09458,K07512,K11262,K00059","K03955,K22541" +"M00102","72.73","Ergocalciferol biosynthesis","Pathway modules; Lipid metabolism; Sterol biosynthesis","K09831,K09827,K00227,K07748,K05917,K07750,K00222,K00223","K09829,K01852,K00559" +"M00038","71.43","Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate","Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism","K00486,K00453,K01556,K00452,K01432","K03392,K10217" +"M00129","71.43","Ascorbate biosynthesis, animals, glucose-1P => ascorbate","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K00103,K00012,K01053,K00963,K01195","K00002,K00699" +"M00845","71.43","Arginine biosynthesis, glutamate => acetylcitrulline => arginine","Pathway modules; Amino acid metabolism; Arginine and proline metabolism","K00821,K01940,K01755,K00145,K01438","K22478,K09065" +"M00065","70.83","GPI-anchor biosynthesis, core oligosaccharide","Pathway modules; Glycan metabolism; Glycan biosynthesis","K03857,K05286,K05285,K03858,K07542,K05288,K03860,K05284,K03859,K05283","K07541,K03861,K03434,K11001,K05287" +"M00101","70.0","Cholesterol biosynthesis, squalene 2,3-epoxide => cholesterol","Pathway modules; Lipid metabolism; Sterol biosynthesis","K00222,K05917,K00227,K07750,K01824,K07748,K09828","K00213,K01852,K13373" +"M00040","66.67","Tyrosine biosynthesis, prephanate => pretyrosine => tyrosine","Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism","K00220,K01850","K00832" +"M00047","66.67","Creatine pathway","Pathway modules; Amino acid metabolism; Arginine and proline metabolism","K00542,K00613","K00933" +"M00124","66.67","Pyridoxal biosynthesis, erythrose-4P => pyridoxal-5P","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K00097,K00275,K00831,K03474","K03473,K03472" +"M00153","66.67","Cytochrome bd ubiquinol oxidase","Pathway modules; Energy metabolism; ATP synthesis","K00425,K00426","K00424" +"M00175","66.67","Nitrogen fixation, nitrogen => ammonia","Pathway modules; Energy metabolism; Nitrogen metabolism","K02586,K02591","K02588" +"M00525","66.67","Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine","Pathway modules; Amino acid metabolism; Lysine metabolism","K00928,K01714,K00133,K01778,K00215,K01586","K05822,K05823,K00841" +"M00530","66.67","Dissimilatory nitrate reduction, nitrate => ammonia","Pathway modules; Energy metabolism; Nitrogen metabolism","K00363,K00374,K00362","K00371,K00370" +"M00545","66.67","Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA","Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism","K01666,K04073,K05712,K02554","K05713,K05714" +"M00609","66.67","Cysteine biosynthesis, methionine => cysteine","Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism","K17462,K00789,K01243,K07173","K17217,K17216" +"M00627","66.67","beta-Lactam resistance, Bla system","Signature modules; Gene set; Drug resistance","K02171,K17836","K02172" +"M00744","66.67","Cationic antimicrobial peptide (CAMP) resistance, protease PgtE","Signature modules; Gene set; Drug resistance","K07637,K07660","K08477" +"M00842","66.67","Tetrahydrobiopterin biosynthesis, GTP => BH4","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K01495,K01737","K00072" +"M00843","66.67","L-threo-Tetrahydrobiopterin biosynthesis, GTP => L-threo-BH4","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K01495,K01737","K17745" +"M00014","64.29","Glucuronate pathway (uronate pathway)","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K00854,K00012,K13247,K16190,K03331","K00002,K05351,K12447" +"M00160","61.54","V-type ATPase, eukaryotes","Pathway modules; Energy metabolism; ATP synthesis","K02144,K02150,K03661,K02153,K02148,K02151,K02154,K02146","K03662,K02147,K02145,K02149,K02152" +"M00033","60.0","Ectoine biosynthesis, aspartate => ectoine","Pathway modules; Amino acid metabolism; Serine and threonine metabolism","K00836,K00928,K00133","K06718,K06720" +"M00064","60.0","ADP-L-glycero-D-manno-heptose biosynthesis","Pathway modules; Glycan metabolism; Lipopolysaccharide metabolism","K03271,K03274,K03273","K03272" +"M00573","60.0","Biotin biosynthesis, BioI pathway, long-chain-acyl-ACP => pimeloyl-ACP => biotin","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K01935,K00652,K01012","K16593,K19563" +"M00114","55.56","Ascorbate biosynthesis, plants, glucose-6P => ascorbate","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K00966,K01809,K01810,K10046,K17497","K00225,K14190,K10047,K17744" +"M00740","54.55","Methylaspartate cycle","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K00261,K01681,K00024,K00031,K14449,K01647","K19280,K19268,K04835,K19282,K19281,K01846" +"M00066","50.0","Lactosylceramide biosynthesis","Pathway modules; Lipid metabolism; Lipid metabolism","K00720","K07553" +"M00098","50.0","Acylglycerol degradation","Pathway modules; Lipid metabolism; Lipid metabolism","K01046","K01054" +"M00130","50.0","Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K00888,K00889","K01116,K00911" +"M00141","50.0","C1-unit interconversion, eukaryotes","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K00600","K00288" +"M00143","50.0","NADH dehydrogenase (ubiquinone) Fe-S protein/flavoprotein complex, mitochondria","Pathway modules; Energy metabolism; ATP synthesis","K03938,K03939,K03940,K03936,K03937","K03935,K03934,K03941,K03942,K03943" +"M00152","50.0","Cytochrome bc1 complex","Pathway modules; Energy metabolism; ATP synthesis","K00412,K00411,K00417,K00418,K00413","K00420,K00415,K00416,K00419,K00414" +"M00170","50.0","C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type","Pathway modules; Energy metabolism; Carbon fixation","K01595,K01610","K14455,K14454" +"M00358","50.0","Coenzyme M biosynthesis","Pathway modules; Energy metabolism; Methane metabolism","K05979,K08097","K06034,K05884,K13039" +"M00365","50.0","C10-C20 isoprenoid biosynthesis, archaea","Pathway modules; Biosynthesis of terpenoids and polyketides; Terpenoid backbone biosynthesis","K01823","K13787" +"M00415","50.0","Fatty acid elongation in endoplasmic reticulum","Pathway modules; Lipid metabolism; Fatty acid metabolism","K10258,K10251","K10703,K10247" +"M00533","50.0","Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate","Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism","K01826,K00151","K00455,K05921" +"M00546","50.0","Purine degradation, xanthine => urea","Pathway modules; Nucleotide metabolism; Purine metabolism","K11178,K16839,K13483,K07127,K11177","K01466,K13485,K01477" +"M00615","50.0","Nitrate assimilation","Signature modules; Module set; Metabolic capacity","K02575","M00531" +"M00641","50.0","Multidrug resistance, efflux pump MexEF-OprN","Signature modules; Gene set; Drug resistance","K18297","K18299,K18298" +"M00698","50.0","Multidrug resistance, efflux pump BpeEF-OprC","Signature modules; Gene set; Drug resistance","K18900","K18902,K18901,K18903" +"M00840","50.0","Tetrahydrofolate biosynthesis, mediated by ribA and trpF, GTP => THF","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K01633,K14652,K00287","K22100,K22099,K13941" +"M00154","46.67","Cytochrome c oxidase","Pathway modules; Energy metabolism; ATP synthesis","K02259,K02265,K02263,K02257,K02266,K02261,K02258","K02268,K02272,K02262,K02267,K02256,K02264,K02270,K02260" +"M00374","46.15","Dicarboxylate-hydroxybutyrate cycle","Pathway modules; Energy metabolism; Carbon fixation","K00241,K00024,K00239,K01595,K01903,K01902,K00626,K00240,K01007","K14467,K01678,K00172,K14534,K00169,K15016,K00170,K00171,K15038,K14465,K01677" +"M00377","42.86","Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway)","Pathway modules; Energy metabolism; Carbon fixation","K01938,K01491,K00297","K15023,K00197,K14138,K05299,K00194,K00198" +"M00873","41.67","Fatty acid biosynthesis in mitochondria, animals","Pathway modules; Lipid metabolism; Fatty acid metabolism","K00645,K09458,K07512","K22540,K11539,K18660,K03955,K13370" +"M00013","40.0","Malonate semialdehyde pathway, propanoyl-CoA => acetyl-CoA","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K00140,K00232","K05605,K07511,K23146" +"M00076","40.0","Dermatan sulfate degradation","Pathway modules; Glycan metabolism; Glycosaminoglycan metabolism","K01195,K01136","K01135,K01197,K01217" +"M00158","40.0","F-type ATPase, eukaryotes","Pathway modules; Energy metabolism; ATP synthesis","K02141,K02133,K02125,K02126,K02128,K02127","K02129,K02135,K02140,K02137,K02136,K02132,K02138,K02134,K02130" +"M00539","40.0","Cumate degradation, p-cumate => 2-oxopent-4-enoate + 2-methylpropanoate","Pathway modules; Xenobiotics biodegradation; Aromatics degradation","K10622,K10621","K18227,K10623,K16304,K16303,K10620,K10619" +"M00550","40.0","Ascorbate degradation, ascorbate => D-xylulose-5P","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K03077,K03079","K03078,K02821,K03475,K02822,K03476" +"M00575","40.0","Pertussis pathogenicity signature, T1SS","Signature modules; Gene set; Pathogenicity","K07389,K12340","K11003,K22944,K11004" +"M00841","40.0","Tetrahydrofolate biosynthesis, mediated by PTPS, GTP => THF","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K01495,K11754","K22101,K13998,K13941" +"M00078","37.5","Heparan sulfate degradation","Pathway modules; Glycan metabolism; Glycosaminoglycan metabolism","K01195,K10532,K01136","K07964,K01137,K01205,K01565,K01217" +"M00616","37.5","Sulfate-sulfur assimilation","Signature modules; Module set; Metabolic capacity","K02045,K02046,K02047","K02048,M00176" +"M00620","35.71","Incomplete reductive citrate cycle, acetyl-CoA => oxoglutarate","Pathway modules; Energy metabolism; Carbon fixation","K00174,K01902,K00175,K01903,K00024","K18210,K01959,K01678,K00172,K00176,K00177,K01960,K00169,K00170,K00171,K18209,K01677" +"M00085","33.33","Fatty acid elongation in mitochondria","Pathway modules; Lipid metabolism; Fatty acid metabolism","K07512","K00022,K07511,K07508" +"M00090","33.33","Phosphatidylcholine (PC) biosynthesis, choline => PC","Pathway modules; Lipid metabolism; Lipid metabolism","K00968","K00994,K00866" +"M00092","33.33","Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE","Pathway modules; Lipid metabolism; Lipid metabolism","K00967","K00894,K00993" +"M00132","33.33","Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K00915","K10572,K00913" +"M00156","33.33","Cytochrome c oxidase, cbb3-type","Pathway modules; Energy metabolism; ATP synthesis","K00406","K00405,K00407,K00404" +"M00309","33.33","Non-phosphorylative Entner-Doudoroff pathway, gluconate/galactonate => glycerate","Pathway modules; Carbohydrate metabolism; Central carbohydrate metabolism","K03738","K05308,K11395" +"M00368","33.33","Ethylene biosynthesis, methionine => ethylene","Pathway modules; Amino acid metabolism; Cysteine and methionine metabolism","K00789","K05933,K01762" +"M00537","33.33","Xylene degradation, xylene => methylbenzoate","Pathway modules; Xenobiotics biodegradation; Aromatics degradation","K00055","K15758,K15757,K00141" +"M00538","33.33","Toluene degradation, toluene => benzoate","Pathway modules; Xenobiotics biodegradation; Aromatics degradation","K00055","K15763,K00141,K15764,K15761,K15760" +"M00596","33.33","Dissimilatory sulfate reduction, sulfate => H2S","Pathway modules; Energy metabolism; Sulfur metabolism","K00958","K11181,K11180,K00395,K00394" +"M00622","33.33","Nicotinate degradation, nicotinate => fumarate","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K01799,K13995","K18028,K15357,K14974,K18029,K18030" +"M00649","33.33","Multidrug resistance, efflux pump AdeABC","Signature modules; Gene set; Drug resistance","K18144","K18146,K18145,K18143" +"M00726","33.33","Cationic antimicrobial peptide (CAMP) resistance, lysyl-phosphatidylglycerol (L-PG) synthase MprF","Signature modules; Gene set; Drug resistance","K14205","K19078,K19077" +"M00769","33.33","Multidrug resistance, efflux pump MexPQ-OpmE","Signature modules; Gene set; Drug resistance","K19591","K19594,K18304,K19593,K19595" +"M00829","33.33","3,6-Dimethylsalicylyl-CoA biosynthesis, malonyl-CoA => 6-methylsalicylate => 3,6-dimethylsalicylyl-CoA","Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis","K15320","K21192,K21191" +"M00861","33.33","beta-Oxidation, peroxisome, VLCFA","Pathway modules; Lipid metabolism; Fatty acid metabolism","K00232","K07513,K12405" +"M00074","30.0","N-glycan biosynthesis, high-mannose type","Pathway modules; Glycan metabolism; Glycan biosynthesis","K05528,K05529,K05531,K05533","K05530,K23741,K01230,K05535,K05546,K05532,K05534" +"M00171","28.57","C4-dicarboxylic acid cycle, NAD - malic enzyme type","Pathway modules; Energy metabolism; Carbon fixation","K01595,K01006","K00814,K14455,K00028,K14454,K00025" +"M00835","28.57","Pyocyanine biosynthesis, chorismate => pyocyanine","Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other secondary metabolites","K20940,K06998","K21103,K13063,K20260,K20261,K20262" +"M00860","28.57","Bacillus anthracis pathogenicity signature, polyglutamic acid capsule biosynthesis","Signature modules; Gene set; Pathogenicity","K22116,K01932","K22976,K22981,K07282,K22980,K22977" +"M00032","27.78","Lysine degradation, lysine => saccharopine => acetoacetyl-CoA","Pathway modules; Amino acid metabolism; Lysine metabolism","K00252,K00382,K00658","K07514,K00825,K15791,K14157,K14085" +"M00037","25.0","Melatonin biosynthesis, tryptophan => serotonin => melatonin","Pathway modules; Amino acid metabolism; Aromatic amino acid metabolism","K01593","K00502,K00669,K00543" +"M00073","25.0","N-glycan precursor trimming","Pathway modules; Glycan metabolism; Glycan biosynthesis","K01228","K05546,K23741,K01230" +"M00077","25.0","Chondroitin sulfate degradation","Pathway modules; Glycan metabolism; Glycosaminoglycan metabolism","K01195","K01135,K01197,K01132" +"M00079","25.0","Keratan sulfate degradation","Pathway modules; Glycan metabolism; Glycosaminoglycan metabolism","K12373","K12309,K01137,K01132" +"M00131","25.0","Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K01092","K01109,K01106,K01107" +"M00136","25.0","GABA biosynthesis, prokaryotes, putrescine => GABA","Pathway modules; Amino acid metabolism; Polyamine biosynthesis","K09471","K09470,K09472,K09473" +"M00148","25.0","Succinate dehydrogenase (ubiquinone)","Pathway modules; Energy metabolism; ATP synthesis","K00236","K00237,K00234,K00235" +"M00630","25.0","D-Galacturonate degradation (fungi), D-galacturonate => glycerol","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K18106","K18103,K18107,K18102" +"M00761","25.0","Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N","Pathway modules; Carbohydrate metabolism; Other carbohydrate metabolism","K10011","K07806,K10012,K13014" +"M00778","25.0","Type II polyketide backbone biosynthesis, acyl-CoA + malonyl-CoA => polyketide","Pathway modules; Biosynthesis of terpenoids and polyketides; Type II polyketide biosynthesis","K05555","K05552,K05551,K05553,K05554" +"M00801","25.0","dTDP-L-olivose biosynthesis","Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis","K16435","K19858,K13327,K13319" +"M00803","25.0","dTDP-D-angolosamine biosynthesis","Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis","K16435","K16436,K13332,K19859" +"M00872","25.0","O-glycan biosynthesis, mannose type (core M3)","Pathway modules; Glycan metabolism; Glycan biosynthesis","K00728","K18207,K09654,K17547" +"M00375","21.43","Hydroxypropionate-hydroxybutylate cycle","Pathway modules; Energy metabolism; Carbon fixation","K01848,K05606,K00626,K01849","K14465,K14466,K15018,K15037,K15036,K15019,K15020,K15016,K15039,K15038,K15017,K01964,K14534" +"M00357","20.0","Methanogenesis, acetate => methane","Pathway modules; Energy metabolism; Methane metabolism","K01895","K22480,K00580,K00197,K22481,K00194,K00581,K00401,K00578,K00193,K00577,K00579,K00402,K22482,K00399,K00584" +"M00372","20.0","Abscisic acid biosynthesis, beta-carotene => abscisic acid","Pathway modules; Biosynthesis of terpenoids and polyketides; Other terpenoid biosynthesis","K15746","K09840,K09841,K09838,K09842" +"M00540","20.0","Benzoate degradation, cyclohexanecarboxylic acid =>pimeloyl-CoA","Pathway modules; Xenobiotics biodegradation; Aromatics degradation","K07535","K07536,K04117,K04116,K07534" +"M00798","20.0","dTDP-L-mycarose biosynthesis","Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis","K16435","K13316,K13317,K13315,K13318" +"M00799","20.0","dTDP-L-oleandrose biosynthesis","Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis","K16435","K19856,K16438,K13315,K19857" +"M00800","20.0","dTDP-L-megosamine biosynthesis","Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis","K16435","K16438,K13326,K16436,K13322" +"M00802","20.0","dTDP-D-forosamine biosynthesis","Pathway modules; Biosynthesis of terpenoids and polyketides; Polyketide sugar unit biosynthesis","K16435","K13330,K13329,K13328,K13327" +"M00128","16.67","Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate => ubiquinone","Pathway modules; Metabolism of cofactors and vitamins; Cofactor and vitamin metabolism","K06134","K06127,K06126,K06125,K00591" +"M00548","16.67","Benzene degradation, benzene => catechol","Pathway modules; Xenobiotics biodegradation; Aromatics degradation","K16244","K16246,K16242,K16245,K16243,K16249" +"M00696","16.67","Multidrug resistance, efflux pump AcrEF-TolC","Signature modules; Gene set; Drug resistance","K12340","K18141,K18142,K18140" +"M00697","16.67","Multidrug resistance, efflux pump MdtEF-TolC","Signature modules; Gene set; Drug resistance","K12340","K07690,K18898,K18899" +"M00718","16.67","Multidrug resistance, efflux pump MexAB-OprM","Signature modules; Gene set; Drug resistance","K18138","K18139,K03585,K18131" +"M00789","16.67","Rebeccamycin biosynthesis, tryptophan => rebeccamycin","Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other secondary metabolites","K14266","K19885,K19884,K19889,K19888,K19887,K19886" +"M00147","15.38","NADH dehydrogenase (ubiquinone) 1 beta subcomplex","Pathway modules; Energy metabolism; ATP synthesis","K03964,K03963","K03966,K11351,K03961,K03962,K03959,K03965,K03957,K03967,K03968,K03960,K03958" +"M00567","15.0","Methanogenesis, CO2 => methane","Pathway modules; Energy metabolism; Methane metabolism","K11261,K00672,K00200","K03389,K00580,K00202,K14128,K00319,K00203,K00581,K00401,K00578,K00577,K01499,K00320,K00205,K00579,K00402,K03388,K14126,K14127,K03390,K00201,K00399,K00584" +"M00142","14.29","NADH","Pathway modules; Energy metabolism; ATP synthesis","K03883","K03881,K03880,K03884,K03879,K03882,K03878" +"M00875","14.29","Staphyloferrin B biosynthesis, L-serine => staphyloferrin B","Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other secondary metabolites","K21949","K23372,K23373,K23371,K23374,K23375,K21721" +"M00113","12.5","Jasmonic acid biosynthesis","Pathway modules; Lipid metabolism; Lipid metabolism","K00232","K00454,K01723,K07513,K10527,K05894,K10525,K10526" +"M00039","10.0","Monolignol biosynthesis, phenylalanine/tyrosine => monolignol","Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other secondary metabolites","K00588","K00487,K09754,K09753,K01904,K10775,K13065,K13066,K00083,K09755" +"M00104","8.33","Bile acid biosynthesis, cholesterol => cholate/chenodeoxycholate","Pathway modules; Lipid metabolism; Sterol biosynthesis","K01796","K00489,K11992,K10214,K12408,K08748,K00037,K00488,K07431,K12405,K00251,K08764" +"M00529","8.33","Denitrification, nitrate => nitrogen","Pathway modules; Energy metabolism; Nitrogen metabolism","K00374","K00371,K00370,K02305,K04561,K00376,K00368" +"M00736","8.33","Nocardicin A biosynthesis, L-pHPG + arginine + serine => nocardicin A","Pathway modules; Biosynthesis of other secondary metabolites; beta-Lactam biosynthesis","K05375","K19104,K19105,K19106,K19103,K19102" +"M00542","7.5","EHEC/EPEC pathogenicity signature, T3SS and effectors","Signature modules; Gene set; Pathogenicity","K03226,K03222,K03229,K03227,K03219,K03228","K03225,K03230,K12784,K12785,K16042,K16041,K12788,K03221,K12787,K03224,K12786" +"M00146","7.14","NADH dehydrogenase (ubiquinone) 1 alpha subcomplex","Pathway modules; Energy metabolism; ATP synthesis","K03952","K03949,K03948,K11353,K03954,K03946,K03950,K03951,K03956,K03945,K11352,K03947,K03953,K03955" +"M00660","6.82","Xanthomonas spp. pathogenicity signature, T3SS and effectors","Signature modules; Gene set; Plant pathogenicity","K03226,K03222,K03229,K03227,K03228,K03223","K18374,K18376,K03225,K18381,K03230,K18373,K18378,K18379,K18375,K18380,K03224,K18377" +"M00823","6.25","Chlortetracycline biosynthesis, pretetramide => chlortetracycline","Pathway modules; Biosynthesis of terpenoids and polyketides; Type II polyketide biosynthesis","K14257","K14251,K14255,K21297,K14252,K14253,K14254,K14256,K21301" +"M00824","6.25","9-membered enediyne core biosynthesis, malonyl-CoA => 3-hydroxyhexadeca-4,6,8,10,12,14-hexaenoyl-ACP => 9-membered enediyne core","Pathway modules; Biosynthesis of terpenoids and polyketides; Enediyne biosynthesis","K21164","K21167,K21166,K21160,K21161,K21165,K21163,K15314,K21162" +"M00564","4.35","Helicobacter pylori pathogenicity signature, cagA pathogenicity island","Signature modules; Gene set; Pathogenicity","K03196","K12091,K12090,K12101,K12094,K12105,K12093,K12086,K15842,K12097,K12107,K12088,K12106,K12095,K12103,K12096,K12104,K12102,K12109,K12089,K12098,K12108,K12110" +"M00848","3.12","Aurachin biosynthesis, anthranilate => aurachin A","Pathway modules; Biosynthesis of other secondary metabolites; Biosynthesis of other secondary metabolites","K02078","K21271,K22802,K22799,K22800,K22801,K14245,K22798,K14246,K09460,K21272"
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/pathways_and_systems/MGYS00006583_metadata.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,50 @@ +analysis_id name group_type description download_url pipeline_version experiment_type +MGYA00722210 ERZ21819995_Archaea_SRP.RF01857.fasta.gz non-coding RNAs Predicted Archaea SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Archaea_SRP.RF01857.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA.fasta.gz Sequence data Processed contigs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_GO.csv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_GO_slim.csv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_InterPro.csv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_InterPro.tsv.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_LSU.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_LSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_LSU_OTU.tsv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_LSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_LSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_SSU.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_SSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_SSU_OTU.tsv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_SSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_SSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_annotations.gff.bgz Functional analysis Combined (eggNOG, InterPro, antiSMASH) annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_annotations.gff.bgz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_diamond.tsv.gz Functional analysis Diamond annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_diamond.tsv.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_emapper.annotations.tsv.gz Functional analysis eggNOG annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_emapper.annotations.tsv.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_emapper.seed_orthologs.tsv.gz Functional analysis eggNOG seed orthologs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_emapper.seed_orthologs.tsv.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_ko.tsv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_pfam.tsv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_predicted_cds.faa.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_predicted_orf.ffn.gz 5.0 assembly +MGYA00722210 ERZ21819995_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_alpha_tmRNA.RF01849.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Bacteria_large_SRP.RF01854.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Bacteria_small_SRP.RF00169.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_antismash.embl.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_antismash.embl.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_antismash.gbk.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_antismash.gbk.gz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_antismash.gff.bgz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_antismash.gff.bgz 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_antismash_summary.csv Pathways and Systems antiSMASH summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_antismash_summary.csv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_gp.csv Pathways and Systems Genome Properties annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_gp.csv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_kegg_pathways.csv Pathways and Systems KEGG pathway annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_kegg_pathways.csv 5.0 assembly +MGYA00722210 ERZ21819995_FASTA_kegg_pathways_contigs.tsv Pathways and Systems KEGG pathway annotation (contig) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_FASTA_kegg_pathways_contigs.tsv 5.0 assembly +MGYA00722210 ERZ21819995_Fungi_SRP.RF01502.fasta.gz non-coding RNAs Predicted Fungi SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Fungi_SRP.RF01502.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_Metazoa_SRP.RF00017.fasta.gz non-coding RNAs Predicted Metazoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Metazoa_SRP.RF00017.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_Plant_SRP.RF01855.fasta.gz non-coding RNAs Predicted Plant SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Plant_SRP.RF01855.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_Protozoa_SRP.RF01856.fasta.gz non-coding RNAs Predicted Protozoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_Protozoa_SRP.RF01856.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_RNaseP_arch.RF00373.fasta.gz non-coding RNAs Predicted Archaeal RNase P RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_RNaseP_arch.RF00373.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_RNaseP_bact_a.RF00010.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_RNaseP_bact_b.RF00011.fasta.gz non-coding RNAs Predicted Bacterial RNase P class B RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_RNaseP_bact_b.RF00011.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_RNase_MRP.RF00030.fasta.gz non-coding RNAs Predicted RNase MRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_RNase_MRP.RF00030.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_RNase_P.RF01577.fasta.gz non-coding RNAs Predicted Plasmodium RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_RNase_P.RF01577.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_beta_tmRNA.RF01850.fasta.gz non-coding RNAs Predicted beta tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_beta_tmRNA.RF01850.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_cyano_tmRNA.RF01851.fasta.gz non-coding RNAs Predicted cyano tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_cyano_tmRNA.RF01851.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_mt-tmRNA.RF02544.fasta.gz non-coding RNAs Predicted mt-tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_mt-tmRNA.RF02544.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_tRNA-Sec.RF01852.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_tRNA.RF00005.fasta.gz 5.0 assembly +MGYA00722210 ERZ21819995_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00722210/file/ERZ21819995_tmRNA.RF00023.fasta.gz 5.0 assembly
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sequence_data/MGYS00003607_metadata.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,12 @@ +analysis_id name group_type description download_url pipeline_version experiment_type +MGYA00248959 ERZ746984.tRNA.RF00005.fa non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00248959/file/ERZ746984.tRNA.RF00005.fa 4.1 assembly +MGYA00248959 ERZ746984_FASTA.fasta.gz Sequence data Processed contigs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00248959/file/ERZ746984_FASTA.fasta.gz 4.1 assembly +MGYA00248959 ERZ746984_FASTA_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00248959/file/ERZ746984_FASTA_CDS_annotated.faa.gz 4.1 assembly +MGYA00248959 ERZ746984_FASTA_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00248959/file/ERZ746984_FASTA_CDS_unannotated.faa.gz 4.1 assembly +MGYA00248959 ERZ746984_FASTA_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00248959/file/ERZ746984_FASTA_GO.csv 4.1 assembly +MGYA00248959 ERZ746984_FASTA_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00248959/file/ERZ746984_FASTA_GO_slim.csv 4.1 assembly +MGYA00248959 ERZ746984_FASTA_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00248959/file/ERZ746984_FASTA_InterPro.tsv.gz 4.1 assembly +MGYA00248959 ERZ746984_FASTA_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00248959/file/ERZ746984_FASTA_ORF_unannotated.ffn.gz 4.1 assembly +MGYA00248959 ERZ746984_FASTA_interproscan.fasta.gz Sequence data Processed contigs with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00248959/file/ERZ746984_FASTA_interproscan.fasta.gz 4.1 assembly +MGYA00248959 ERZ746984_FASTA_noFunction.fasta.gz Sequence data Processed contigs without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00248959/file/ERZ746984_FASTA_noFunction.fasta.gz 4.1 assembly +MGYA00248959 ERZ746984_FASTA_readsWithpCDS.fasta.gz Sequence data Processed contigs with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00248959/file/ERZ746984_FASTA_readsWithpCDS.fasta.gz 4.1 assembly
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/statistics/MGYS00001619_metadata.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,290 @@ +analysis_id name group_type description download_url pipeline_version experiment_type +MGYA00105033 ERR1014379_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105033/file/ERR1014379_FASTQ.fasta.gz 3.0 metabarcoding +MGYA00105033 ERR1014379_FASTQ_16SrRNA.fasta Taxonomic analysis Reads encoding 16S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105033/file/ERR1014379_FASTQ_16SrRNA.fasta 3.0 metabarcoding +MGYA00105033 ERR1014379_FASTQ_23SrRNA.fasta Taxonomic analysis Reads encoding 23S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105033/file/ERR1014379_FASTQ_23SrRNA.fasta 3.0 metabarcoding +MGYA00105033 ERR1014379_FASTQ_5SrRNA.fasta Taxonomic analysis Reads encoding 5S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105033/file/ERR1014379_FASTQ_5SrRNA.fasta 3.0 metabarcoding +MGYA00105033 ERR1014379_FASTQ_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105033/file/ERR1014379_FASTQ_CDS_annotated.faa.gz 3.0 metabarcoding +MGYA00105033 ERR1014379_FASTQ_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105033/file/ERR1014379_FASTQ_CDS_unannotated.faa.gz 3.0 metabarcoding +MGYA00105033 ERR1014379_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105033/file/ERR1014379_FASTQ_GO.csv 3.0 metabarcoding +MGYA00105033 ERR1014379_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105033/file/ERR1014379_FASTQ_GO_slim.csv 3.0 metabarcoding +MGYA00105033 ERR1014379_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105033/file/ERR1014379_FASTQ_InterPro.tsv.gz 3.0 metabarcoding +MGYA00105033 ERR1014379_FASTQ_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105033/file/ERR1014379_FASTQ_ORF_unannotated.ffn.gz 3.0 metabarcoding +MGYA00105033 ERR1014379_FASTQ_interproscan.fasta.gz Sequence data Processed reads with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105033/file/ERR1014379_FASTQ_interproscan.fasta.gz 3.0 metabarcoding +MGYA00105033 ERR1014379_FASTQ_noFunction.fasta.gz Sequence data Processed reads without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105033/file/ERR1014379_FASTQ_noFunction.fasta.gz 3.0 metabarcoding +MGYA00105033 ERR1014379_FASTQ_otu.tsv Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105033/file/ERR1014379_FASTQ_otu.tsv 3.0 metabarcoding +MGYA00105033 ERR1014379_FASTQ_otu_table_hdf5.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105033/file/ERR1014379_FASTQ_otu_table_hdf5.biom 3.0 metabarcoding +MGYA00105033 ERR1014379_FASTQ_otu_table_json.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105033/file/ERR1014379_FASTQ_otu_table_json.biom 3.0 metabarcoding +MGYA00105033 ERR1014379_FASTQ_pruned.tree Taxonomic analysis Phylogenetic tree https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105033/file/ERR1014379_FASTQ_pruned.tree 3.0 metabarcoding +MGYA00105033 ERR1014379_FASTQ_readsWithpCDS.fasta.gz Sequence data Processed reads with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105033/file/ERR1014379_FASTQ_readsWithpCDS.fasta.gz 3.0 metabarcoding +MGYA00105033 ERR1014379_FASTQ_tRNA.fasta non-coding RNAs Predicted tRNAs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105033/file/ERR1014379_FASTQ_tRNA.fasta 3.0 metabarcoding +MGYA00105034 ERR1014370_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105034/file/ERR1014370_FASTQ.fasta.gz 3.0 metabarcoding +MGYA00105034 ERR1014370_FASTQ_16SrRNA.fasta Taxonomic analysis Reads encoding 16S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105034/file/ERR1014370_FASTQ_16SrRNA.fasta 3.0 metabarcoding +MGYA00105034 ERR1014370_FASTQ_23SrRNA.fasta Taxonomic analysis Reads encoding 23S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105034/file/ERR1014370_FASTQ_23SrRNA.fasta 3.0 metabarcoding +MGYA00105034 ERR1014370_FASTQ_5SrRNA.fasta Taxonomic analysis Reads encoding 5S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105034/file/ERR1014370_FASTQ_5SrRNA.fasta 3.0 metabarcoding +MGYA00105034 ERR1014370_FASTQ_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105034/file/ERR1014370_FASTQ_CDS_annotated.faa.gz 3.0 metabarcoding +MGYA00105034 ERR1014370_FASTQ_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105034/file/ERR1014370_FASTQ_CDS_unannotated.faa.gz 3.0 metabarcoding +MGYA00105034 ERR1014370_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105034/file/ERR1014370_FASTQ_GO.csv 3.0 metabarcoding +MGYA00105034 ERR1014370_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105034/file/ERR1014370_FASTQ_GO_slim.csv 3.0 metabarcoding +MGYA00105034 ERR1014370_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105034/file/ERR1014370_FASTQ_InterPro.tsv.gz 3.0 metabarcoding +MGYA00105034 ERR1014370_FASTQ_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105034/file/ERR1014370_FASTQ_ORF_unannotated.ffn.gz 3.0 metabarcoding +MGYA00105034 ERR1014370_FASTQ_interproscan.fasta.gz Sequence data Processed reads with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105034/file/ERR1014370_FASTQ_interproscan.fasta.gz 3.0 metabarcoding +MGYA00105034 ERR1014370_FASTQ_noFunction.fasta.gz Sequence data Processed reads without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105034/file/ERR1014370_FASTQ_noFunction.fasta.gz 3.0 metabarcoding +MGYA00105034 ERR1014370_FASTQ_otu.tsv Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105034/file/ERR1014370_FASTQ_otu.tsv 3.0 metabarcoding +MGYA00105034 ERR1014370_FASTQ_otu_table_hdf5.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105034/file/ERR1014370_FASTQ_otu_table_hdf5.biom 3.0 metabarcoding +MGYA00105034 ERR1014370_FASTQ_otu_table_json.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105034/file/ERR1014370_FASTQ_otu_table_json.biom 3.0 metabarcoding +MGYA00105034 ERR1014370_FASTQ_pruned.tree Taxonomic analysis Phylogenetic tree https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105034/file/ERR1014370_FASTQ_pruned.tree 3.0 metabarcoding +MGYA00105034 ERR1014370_FASTQ_readsWithpCDS.fasta.gz Sequence data Processed reads with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105034/file/ERR1014370_FASTQ_readsWithpCDS.fasta.gz 3.0 metabarcoding +MGYA00105034 ERR1014370_FASTQ_tRNA.fasta non-coding RNAs Predicted tRNAs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105034/file/ERR1014370_FASTQ_tRNA.fasta 3.0 metabarcoding +MGYA00105035 ERR1014376_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105035/file/ERR1014376_FASTQ.fasta.gz 3.0 metabarcoding +MGYA00105035 ERR1014376_FASTQ_16SrRNA.fasta Taxonomic analysis Reads encoding 16S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105035/file/ERR1014376_FASTQ_16SrRNA.fasta 3.0 metabarcoding +MGYA00105035 ERR1014376_FASTQ_23SrRNA.fasta Taxonomic analysis Reads encoding 23S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105035/file/ERR1014376_FASTQ_23SrRNA.fasta 3.0 metabarcoding +MGYA00105035 ERR1014376_FASTQ_5SrRNA.fasta Taxonomic analysis Reads encoding 5S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105035/file/ERR1014376_FASTQ_5SrRNA.fasta 3.0 metabarcoding +MGYA00105035 ERR1014376_FASTQ_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105035/file/ERR1014376_FASTQ_CDS_annotated.faa.gz 3.0 metabarcoding +MGYA00105035 ERR1014376_FASTQ_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105035/file/ERR1014376_FASTQ_CDS_unannotated.faa.gz 3.0 metabarcoding +MGYA00105035 ERR1014376_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105035/file/ERR1014376_FASTQ_GO.csv 3.0 metabarcoding +MGYA00105035 ERR1014376_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105035/file/ERR1014376_FASTQ_GO_slim.csv 3.0 metabarcoding +MGYA00105035 ERR1014376_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105035/file/ERR1014376_FASTQ_InterPro.tsv.gz 3.0 metabarcoding +MGYA00105035 ERR1014376_FASTQ_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105035/file/ERR1014376_FASTQ_ORF_unannotated.ffn.gz 3.0 metabarcoding +MGYA00105035 ERR1014376_FASTQ_interproscan.fasta.gz Sequence data Processed reads with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105035/file/ERR1014376_FASTQ_interproscan.fasta.gz 3.0 metabarcoding +MGYA00105035 ERR1014376_FASTQ_noFunction.fasta.gz Sequence data Processed reads without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105035/file/ERR1014376_FASTQ_noFunction.fasta.gz 3.0 metabarcoding +MGYA00105035 ERR1014376_FASTQ_otu.tsv Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105035/file/ERR1014376_FASTQ_otu.tsv 3.0 metabarcoding +MGYA00105035 ERR1014376_FASTQ_otu_table_hdf5.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105035/file/ERR1014376_FASTQ_otu_table_hdf5.biom 3.0 metabarcoding +MGYA00105035 ERR1014376_FASTQ_otu_table_json.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105035/file/ERR1014376_FASTQ_otu_table_json.biom 3.0 metabarcoding +MGYA00105035 ERR1014376_FASTQ_pruned.tree Taxonomic analysis Phylogenetic tree https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105035/file/ERR1014376_FASTQ_pruned.tree 3.0 metabarcoding +MGYA00105035 ERR1014376_FASTQ_readsWithpCDS.fasta.gz Sequence data Processed reads with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105035/file/ERR1014376_FASTQ_readsWithpCDS.fasta.gz 3.0 metabarcoding +MGYA00105035 ERR1014376_FASTQ_tRNA.fasta non-coding RNAs Predicted tRNAs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105035/file/ERR1014376_FASTQ_tRNA.fasta 3.0 metabarcoding +MGYA00105036 ERR1014377_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105036/file/ERR1014377_FASTQ.fasta.gz 3.0 metabarcoding +MGYA00105036 ERR1014377_FASTQ_16SrRNA.fasta Taxonomic analysis Reads encoding 16S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105036/file/ERR1014377_FASTQ_16SrRNA.fasta 3.0 metabarcoding +MGYA00105036 ERR1014377_FASTQ_23SrRNA.fasta Taxonomic analysis Reads encoding 23S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105036/file/ERR1014377_FASTQ_23SrRNA.fasta 3.0 metabarcoding +MGYA00105036 ERR1014377_FASTQ_5SrRNA.fasta Taxonomic analysis Reads encoding 5S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105036/file/ERR1014377_FASTQ_5SrRNA.fasta 3.0 metabarcoding +MGYA00105036 ERR1014377_FASTQ_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105036/file/ERR1014377_FASTQ_CDS_annotated.faa.gz 3.0 metabarcoding +MGYA00105036 ERR1014377_FASTQ_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105036/file/ERR1014377_FASTQ_CDS_unannotated.faa.gz 3.0 metabarcoding +MGYA00105036 ERR1014377_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105036/file/ERR1014377_FASTQ_GO.csv 3.0 metabarcoding +MGYA00105036 ERR1014377_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105036/file/ERR1014377_FASTQ_GO_slim.csv 3.0 metabarcoding +MGYA00105036 ERR1014377_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105036/file/ERR1014377_FASTQ_InterPro.tsv.gz 3.0 metabarcoding +MGYA00105036 ERR1014377_FASTQ_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105036/file/ERR1014377_FASTQ_ORF_unannotated.ffn.gz 3.0 metabarcoding +MGYA00105036 ERR1014377_FASTQ_interproscan.fasta.gz Sequence data Processed reads with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105036/file/ERR1014377_FASTQ_interproscan.fasta.gz 3.0 metabarcoding +MGYA00105036 ERR1014377_FASTQ_noFunction.fasta.gz Sequence data Processed reads without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105036/file/ERR1014377_FASTQ_noFunction.fasta.gz 3.0 metabarcoding +MGYA00105036 ERR1014377_FASTQ_otu.tsv Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105036/file/ERR1014377_FASTQ_otu.tsv 3.0 metabarcoding +MGYA00105036 ERR1014377_FASTQ_otu_table_hdf5.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105036/file/ERR1014377_FASTQ_otu_table_hdf5.biom 3.0 metabarcoding +MGYA00105036 ERR1014377_FASTQ_otu_table_json.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105036/file/ERR1014377_FASTQ_otu_table_json.biom 3.0 metabarcoding +MGYA00105036 ERR1014377_FASTQ_pruned.tree Taxonomic analysis Phylogenetic tree https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105036/file/ERR1014377_FASTQ_pruned.tree 3.0 metabarcoding +MGYA00105036 ERR1014377_FASTQ_readsWithpCDS.fasta.gz Sequence data Processed reads with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105036/file/ERR1014377_FASTQ_readsWithpCDS.fasta.gz 3.0 metabarcoding +MGYA00105036 ERR1014377_FASTQ_tRNA.fasta non-coding RNAs Predicted tRNAs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105036/file/ERR1014377_FASTQ_tRNA.fasta 3.0 metabarcoding +MGYA00105037 ERR1014371_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105037/file/ERR1014371_FASTQ.fasta.gz 3.0 metabarcoding +MGYA00105037 ERR1014371_FASTQ_16SrRNA.fasta Taxonomic analysis Reads encoding 16S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105037/file/ERR1014371_FASTQ_16SrRNA.fasta 3.0 metabarcoding +MGYA00105037 ERR1014371_FASTQ_23SrRNA.fasta Taxonomic analysis Reads encoding 23S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105037/file/ERR1014371_FASTQ_23SrRNA.fasta 3.0 metabarcoding +MGYA00105037 ERR1014371_FASTQ_5SrRNA.fasta Taxonomic analysis Reads encoding 5S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105037/file/ERR1014371_FASTQ_5SrRNA.fasta 3.0 metabarcoding +MGYA00105037 ERR1014371_FASTQ_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105037/file/ERR1014371_FASTQ_CDS_annotated.faa.gz 3.0 metabarcoding +MGYA00105037 ERR1014371_FASTQ_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105037/file/ERR1014371_FASTQ_CDS_unannotated.faa.gz 3.0 metabarcoding +MGYA00105037 ERR1014371_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105037/file/ERR1014371_FASTQ_GO.csv 3.0 metabarcoding +MGYA00105037 ERR1014371_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105037/file/ERR1014371_FASTQ_GO_slim.csv 3.0 metabarcoding +MGYA00105037 ERR1014371_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105037/file/ERR1014371_FASTQ_InterPro.tsv.gz 3.0 metabarcoding +MGYA00105037 ERR1014371_FASTQ_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105037/file/ERR1014371_FASTQ_ORF_unannotated.ffn.gz 3.0 metabarcoding +MGYA00105037 ERR1014371_FASTQ_interproscan.fasta.gz Sequence data Processed reads with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105037/file/ERR1014371_FASTQ_interproscan.fasta.gz 3.0 metabarcoding +MGYA00105037 ERR1014371_FASTQ_noFunction.fasta.gz Sequence data Processed reads without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105037/file/ERR1014371_FASTQ_noFunction.fasta.gz 3.0 metabarcoding +MGYA00105037 ERR1014371_FASTQ_otu.tsv Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105037/file/ERR1014371_FASTQ_otu.tsv 3.0 metabarcoding +MGYA00105037 ERR1014371_FASTQ_otu_table_hdf5.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105037/file/ERR1014371_FASTQ_otu_table_hdf5.biom 3.0 metabarcoding +MGYA00105037 ERR1014371_FASTQ_otu_table_json.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105037/file/ERR1014371_FASTQ_otu_table_json.biom 3.0 metabarcoding +MGYA00105037 ERR1014371_FASTQ_pruned.tree Taxonomic analysis Phylogenetic tree https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105037/file/ERR1014371_FASTQ_pruned.tree 3.0 metabarcoding +MGYA00105037 ERR1014371_FASTQ_readsWithpCDS.fasta.gz Sequence data Processed reads with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105037/file/ERR1014371_FASTQ_readsWithpCDS.fasta.gz 3.0 metabarcoding +MGYA00105037 ERR1014371_FASTQ_tRNA.fasta non-coding RNAs Predicted tRNAs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105037/file/ERR1014371_FASTQ_tRNA.fasta 3.0 metabarcoding +MGYA00105038 ERR1014383_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105038/file/ERR1014383_FASTQ.fasta.gz 3.0 metabarcoding +MGYA00105038 ERR1014383_FASTQ_16SrRNA.fasta Taxonomic analysis Reads encoding 16S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105038/file/ERR1014383_FASTQ_16SrRNA.fasta 3.0 metabarcoding +MGYA00105038 ERR1014383_FASTQ_23SrRNA.fasta Taxonomic analysis Reads encoding 23S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105038/file/ERR1014383_FASTQ_23SrRNA.fasta 3.0 metabarcoding +MGYA00105038 ERR1014383_FASTQ_5SrRNA.fasta Taxonomic analysis Reads encoding 5S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105038/file/ERR1014383_FASTQ_5SrRNA.fasta 3.0 metabarcoding +MGYA00105038 ERR1014383_FASTQ_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105038/file/ERR1014383_FASTQ_CDS_annotated.faa.gz 3.0 metabarcoding +MGYA00105038 ERR1014383_FASTQ_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105038/file/ERR1014383_FASTQ_CDS_unannotated.faa.gz 3.0 metabarcoding +MGYA00105038 ERR1014383_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105038/file/ERR1014383_FASTQ_GO.csv 3.0 metabarcoding +MGYA00105038 ERR1014383_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105038/file/ERR1014383_FASTQ_GO_slim.csv 3.0 metabarcoding +MGYA00105038 ERR1014383_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105038/file/ERR1014383_FASTQ_InterPro.tsv.gz 3.0 metabarcoding +MGYA00105038 ERR1014383_FASTQ_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105038/file/ERR1014383_FASTQ_ORF_unannotated.ffn.gz 3.0 metabarcoding +MGYA00105038 ERR1014383_FASTQ_interproscan.fasta.gz Sequence data Processed reads with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105038/file/ERR1014383_FASTQ_interproscan.fasta.gz 3.0 metabarcoding +MGYA00105038 ERR1014383_FASTQ_noFunction.fasta.gz Sequence data Processed reads without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105038/file/ERR1014383_FASTQ_noFunction.fasta.gz 3.0 metabarcoding +MGYA00105038 ERR1014383_FASTQ_otu.tsv Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105038/file/ERR1014383_FASTQ_otu.tsv 3.0 metabarcoding +MGYA00105038 ERR1014383_FASTQ_otu_table_hdf5.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105038/file/ERR1014383_FASTQ_otu_table_hdf5.biom 3.0 metabarcoding +MGYA00105038 ERR1014383_FASTQ_otu_table_json.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105038/file/ERR1014383_FASTQ_otu_table_json.biom 3.0 metabarcoding +MGYA00105038 ERR1014383_FASTQ_pruned.tree Taxonomic analysis Phylogenetic tree https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105038/file/ERR1014383_FASTQ_pruned.tree 3.0 metabarcoding +MGYA00105038 ERR1014383_FASTQ_readsWithpCDS.fasta.gz Sequence data Processed reads with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105038/file/ERR1014383_FASTQ_readsWithpCDS.fasta.gz 3.0 metabarcoding +MGYA00105038 ERR1014383_FASTQ_tRNA.fasta non-coding RNAs Predicted tRNAs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105038/file/ERR1014383_FASTQ_tRNA.fasta 3.0 metabarcoding +MGYA00105039 ERR1014381_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105039/file/ERR1014381_FASTQ.fasta.gz 3.0 metabarcoding +MGYA00105039 ERR1014381_FASTQ_16SrRNA.fasta Taxonomic analysis Reads encoding 16S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105039/file/ERR1014381_FASTQ_16SrRNA.fasta 3.0 metabarcoding +MGYA00105039 ERR1014381_FASTQ_23SrRNA.fasta Taxonomic analysis Reads encoding 23S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105039/file/ERR1014381_FASTQ_23SrRNA.fasta 3.0 metabarcoding +MGYA00105039 ERR1014381_FASTQ_5SrRNA.fasta Taxonomic analysis Reads encoding 5S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105039/file/ERR1014381_FASTQ_5SrRNA.fasta 3.0 metabarcoding +MGYA00105039 ERR1014381_FASTQ_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105039/file/ERR1014381_FASTQ_CDS_annotated.faa.gz 3.0 metabarcoding +MGYA00105039 ERR1014381_FASTQ_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105039/file/ERR1014381_FASTQ_CDS_unannotated.faa.gz 3.0 metabarcoding +MGYA00105039 ERR1014381_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105039/file/ERR1014381_FASTQ_GO.csv 3.0 metabarcoding +MGYA00105039 ERR1014381_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105039/file/ERR1014381_FASTQ_GO_slim.csv 3.0 metabarcoding +MGYA00105039 ERR1014381_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105039/file/ERR1014381_FASTQ_InterPro.tsv.gz 3.0 metabarcoding +MGYA00105039 ERR1014381_FASTQ_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105039/file/ERR1014381_FASTQ_ORF_unannotated.ffn.gz 3.0 metabarcoding +MGYA00105039 ERR1014381_FASTQ_interproscan.fasta.gz Sequence data Processed reads with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105039/file/ERR1014381_FASTQ_interproscan.fasta.gz 3.0 metabarcoding +MGYA00105039 ERR1014381_FASTQ_noFunction.fasta.gz Sequence data Processed reads without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105039/file/ERR1014381_FASTQ_noFunction.fasta.gz 3.0 metabarcoding +MGYA00105039 ERR1014381_FASTQ_otu.tsv Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105039/file/ERR1014381_FASTQ_otu.tsv 3.0 metabarcoding +MGYA00105039 ERR1014381_FASTQ_otu_table_hdf5.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105039/file/ERR1014381_FASTQ_otu_table_hdf5.biom 3.0 metabarcoding +MGYA00105039 ERR1014381_FASTQ_otu_table_json.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105039/file/ERR1014381_FASTQ_otu_table_json.biom 3.0 metabarcoding +MGYA00105039 ERR1014381_FASTQ_pruned.tree Taxonomic analysis Phylogenetic tree https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105039/file/ERR1014381_FASTQ_pruned.tree 3.0 metabarcoding +MGYA00105039 ERR1014381_FASTQ_readsWithpCDS.fasta.gz Sequence data Processed reads with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105039/file/ERR1014381_FASTQ_readsWithpCDS.fasta.gz 3.0 metabarcoding +MGYA00105039 ERR1014381_FASTQ_tRNA.fasta non-coding RNAs Predicted tRNAs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105039/file/ERR1014381_FASTQ_tRNA.fasta 3.0 metabarcoding +MGYA00105040 ERR1014369_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105040/file/ERR1014369_FASTQ.fasta.gz 3.0 metabarcoding +MGYA00105040 ERR1014369_FASTQ_16SrRNA.fasta Taxonomic analysis Reads encoding 16S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105040/file/ERR1014369_FASTQ_16SrRNA.fasta 3.0 metabarcoding +MGYA00105040 ERR1014369_FASTQ_23SrRNA.fasta Taxonomic analysis Reads encoding 23S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105040/file/ERR1014369_FASTQ_23SrRNA.fasta 3.0 metabarcoding +MGYA00105040 ERR1014369_FASTQ_5SrRNA.fasta Taxonomic analysis Reads encoding 5S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105040/file/ERR1014369_FASTQ_5SrRNA.fasta 3.0 metabarcoding +MGYA00105040 ERR1014369_FASTQ_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105040/file/ERR1014369_FASTQ_CDS_annotated.faa.gz 3.0 metabarcoding +MGYA00105040 ERR1014369_FASTQ_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105040/file/ERR1014369_FASTQ_CDS_unannotated.faa.gz 3.0 metabarcoding +MGYA00105040 ERR1014369_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105040/file/ERR1014369_FASTQ_GO.csv 3.0 metabarcoding +MGYA00105040 ERR1014369_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105040/file/ERR1014369_FASTQ_GO_slim.csv 3.0 metabarcoding +MGYA00105040 ERR1014369_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105040/file/ERR1014369_FASTQ_InterPro.tsv.gz 3.0 metabarcoding +MGYA00105040 ERR1014369_FASTQ_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105040/file/ERR1014369_FASTQ_ORF_unannotated.ffn.gz 3.0 metabarcoding +MGYA00105040 ERR1014369_FASTQ_interproscan.fasta.gz Sequence data Processed reads with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105040/file/ERR1014369_FASTQ_interproscan.fasta.gz 3.0 metabarcoding +MGYA00105040 ERR1014369_FASTQ_noFunction.fasta.gz Sequence data Processed reads without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105040/file/ERR1014369_FASTQ_noFunction.fasta.gz 3.0 metabarcoding +MGYA00105040 ERR1014369_FASTQ_otu.tsv Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105040/file/ERR1014369_FASTQ_otu.tsv 3.0 metabarcoding +MGYA00105040 ERR1014369_FASTQ_otu_table_hdf5.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105040/file/ERR1014369_FASTQ_otu_table_hdf5.biom 3.0 metabarcoding +MGYA00105040 ERR1014369_FASTQ_otu_table_json.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105040/file/ERR1014369_FASTQ_otu_table_json.biom 3.0 metabarcoding +MGYA00105040 ERR1014369_FASTQ_pruned.tree Taxonomic analysis Phylogenetic tree https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105040/file/ERR1014369_FASTQ_pruned.tree 3.0 metabarcoding +MGYA00105040 ERR1014369_FASTQ_readsWithpCDS.fasta.gz Sequence data Processed reads with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105040/file/ERR1014369_FASTQ_readsWithpCDS.fasta.gz 3.0 metabarcoding +MGYA00105040 ERR1014369_FASTQ_tRNA.fasta non-coding RNAs Predicted tRNAs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105040/file/ERR1014369_FASTQ_tRNA.fasta 3.0 metabarcoding +MGYA00105041 ERR1014374_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105041/file/ERR1014374_FASTQ.fasta.gz 3.0 metabarcoding +MGYA00105041 ERR1014374_FASTQ_16SrRNA.fasta Taxonomic analysis Reads encoding 16S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105041/file/ERR1014374_FASTQ_16SrRNA.fasta 3.0 metabarcoding +MGYA00105041 ERR1014374_FASTQ_23SrRNA.fasta Taxonomic analysis Reads encoding 23S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105041/file/ERR1014374_FASTQ_23SrRNA.fasta 3.0 metabarcoding +MGYA00105041 ERR1014374_FASTQ_5SrRNA.fasta Taxonomic analysis Reads encoding 5S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105041/file/ERR1014374_FASTQ_5SrRNA.fasta 3.0 metabarcoding +MGYA00105041 ERR1014374_FASTQ_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105041/file/ERR1014374_FASTQ_CDS_annotated.faa.gz 3.0 metabarcoding +MGYA00105041 ERR1014374_FASTQ_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105041/file/ERR1014374_FASTQ_CDS_unannotated.faa.gz 3.0 metabarcoding +MGYA00105041 ERR1014374_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105041/file/ERR1014374_FASTQ_GO.csv 3.0 metabarcoding +MGYA00105041 ERR1014374_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105041/file/ERR1014374_FASTQ_GO_slim.csv 3.0 metabarcoding +MGYA00105041 ERR1014374_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105041/file/ERR1014374_FASTQ_InterPro.tsv.gz 3.0 metabarcoding +MGYA00105041 ERR1014374_FASTQ_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105041/file/ERR1014374_FASTQ_ORF_unannotated.ffn.gz 3.0 metabarcoding +MGYA00105041 ERR1014374_FASTQ_interproscan.fasta.gz Sequence data Processed reads with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105041/file/ERR1014374_FASTQ_interproscan.fasta.gz 3.0 metabarcoding +MGYA00105041 ERR1014374_FASTQ_noFunction.fasta.gz Sequence data Processed reads without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105041/file/ERR1014374_FASTQ_noFunction.fasta.gz 3.0 metabarcoding +MGYA00105041 ERR1014374_FASTQ_otu.tsv Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105041/file/ERR1014374_FASTQ_otu.tsv 3.0 metabarcoding +MGYA00105041 ERR1014374_FASTQ_otu_table_hdf5.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105041/file/ERR1014374_FASTQ_otu_table_hdf5.biom 3.0 metabarcoding +MGYA00105041 ERR1014374_FASTQ_otu_table_json.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105041/file/ERR1014374_FASTQ_otu_table_json.biom 3.0 metabarcoding +MGYA00105041 ERR1014374_FASTQ_pruned.tree Taxonomic analysis Phylogenetic tree https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105041/file/ERR1014374_FASTQ_pruned.tree 3.0 metabarcoding +MGYA00105041 ERR1014374_FASTQ_readsWithpCDS.fasta.gz Sequence data Processed reads with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105041/file/ERR1014374_FASTQ_readsWithpCDS.fasta.gz 3.0 metabarcoding +MGYA00105041 ERR1014374_FASTQ_tRNA.fasta non-coding RNAs Predicted tRNAs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105041/file/ERR1014374_FASTQ_tRNA.fasta 3.0 metabarcoding +MGYA00105042 ERR1014380_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105042/file/ERR1014380_FASTQ.fasta.gz 3.0 metabarcoding +MGYA00105042 ERR1014380_FASTQ_16SrRNA.fasta Taxonomic analysis Reads encoding 16S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105042/file/ERR1014380_FASTQ_16SrRNA.fasta 3.0 metabarcoding +MGYA00105042 ERR1014380_FASTQ_23SrRNA.fasta Taxonomic analysis Reads encoding 23S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105042/file/ERR1014380_FASTQ_23SrRNA.fasta 3.0 metabarcoding +MGYA00105042 ERR1014380_FASTQ_5SrRNA.fasta Taxonomic analysis Reads encoding 5S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105042/file/ERR1014380_FASTQ_5SrRNA.fasta 3.0 metabarcoding +MGYA00105042 ERR1014380_FASTQ_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105042/file/ERR1014380_FASTQ_CDS_annotated.faa.gz 3.0 metabarcoding +MGYA00105042 ERR1014380_FASTQ_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105042/file/ERR1014380_FASTQ_CDS_unannotated.faa.gz 3.0 metabarcoding +MGYA00105042 ERR1014380_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105042/file/ERR1014380_FASTQ_GO.csv 3.0 metabarcoding +MGYA00105042 ERR1014380_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105042/file/ERR1014380_FASTQ_GO_slim.csv 3.0 metabarcoding +MGYA00105042 ERR1014380_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105042/file/ERR1014380_FASTQ_InterPro.tsv.gz 3.0 metabarcoding +MGYA00105042 ERR1014380_FASTQ_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105042/file/ERR1014380_FASTQ_ORF_unannotated.ffn.gz 3.0 metabarcoding +MGYA00105042 ERR1014380_FASTQ_interproscan.fasta.gz Sequence data Processed reads with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105042/file/ERR1014380_FASTQ_interproscan.fasta.gz 3.0 metabarcoding +MGYA00105042 ERR1014380_FASTQ_noFunction.fasta.gz Sequence data Processed reads without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105042/file/ERR1014380_FASTQ_noFunction.fasta.gz 3.0 metabarcoding +MGYA00105042 ERR1014380_FASTQ_otu.tsv Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105042/file/ERR1014380_FASTQ_otu.tsv 3.0 metabarcoding +MGYA00105042 ERR1014380_FASTQ_otu_table_hdf5.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105042/file/ERR1014380_FASTQ_otu_table_hdf5.biom 3.0 metabarcoding +MGYA00105042 ERR1014380_FASTQ_otu_table_json.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105042/file/ERR1014380_FASTQ_otu_table_json.biom 3.0 metabarcoding +MGYA00105042 ERR1014380_FASTQ_pruned.tree Taxonomic analysis Phylogenetic tree https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105042/file/ERR1014380_FASTQ_pruned.tree 3.0 metabarcoding +MGYA00105042 ERR1014380_FASTQ_readsWithpCDS.fasta.gz Sequence data Processed reads with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105042/file/ERR1014380_FASTQ_readsWithpCDS.fasta.gz 3.0 metabarcoding +MGYA00105042 ERR1014380_FASTQ_tRNA.fasta non-coding RNAs Predicted tRNAs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105042/file/ERR1014380_FASTQ_tRNA.fasta 3.0 metabarcoding +MGYA00105043 ERR1014384_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105043/file/ERR1014384_FASTQ.fasta.gz 3.0 metabarcoding +MGYA00105043 ERR1014384_FASTQ_16SrRNA.fasta Taxonomic analysis Reads encoding 16S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105043/file/ERR1014384_FASTQ_16SrRNA.fasta 3.0 metabarcoding +MGYA00105043 ERR1014384_FASTQ_23SrRNA.fasta Taxonomic analysis Reads encoding 23S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105043/file/ERR1014384_FASTQ_23SrRNA.fasta 3.0 metabarcoding +MGYA00105043 ERR1014384_FASTQ_5SrRNA.fasta Taxonomic analysis Reads encoding 5S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105043/file/ERR1014384_FASTQ_5SrRNA.fasta 3.0 metabarcoding +MGYA00105043 ERR1014384_FASTQ_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105043/file/ERR1014384_FASTQ_CDS_annotated.faa.gz 3.0 metabarcoding +MGYA00105043 ERR1014384_FASTQ_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105043/file/ERR1014384_FASTQ_CDS_unannotated.faa.gz 3.0 metabarcoding +MGYA00105043 ERR1014384_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105043/file/ERR1014384_FASTQ_GO.csv 3.0 metabarcoding +MGYA00105043 ERR1014384_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105043/file/ERR1014384_FASTQ_GO_slim.csv 3.0 metabarcoding +MGYA00105043 ERR1014384_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105043/file/ERR1014384_FASTQ_InterPro.tsv.gz 3.0 metabarcoding +MGYA00105043 ERR1014384_FASTQ_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105043/file/ERR1014384_FASTQ_ORF_unannotated.ffn.gz 3.0 metabarcoding +MGYA00105043 ERR1014384_FASTQ_interproscan.fasta.gz Sequence data Processed reads with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105043/file/ERR1014384_FASTQ_interproscan.fasta.gz 3.0 metabarcoding +MGYA00105043 ERR1014384_FASTQ_noFunction.fasta.gz Sequence data Processed reads without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105043/file/ERR1014384_FASTQ_noFunction.fasta.gz 3.0 metabarcoding +MGYA00105043 ERR1014384_FASTQ_otu.tsv Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105043/file/ERR1014384_FASTQ_otu.tsv 3.0 metabarcoding +MGYA00105043 ERR1014384_FASTQ_otu_table_hdf5.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105043/file/ERR1014384_FASTQ_otu_table_hdf5.biom 3.0 metabarcoding +MGYA00105043 ERR1014384_FASTQ_otu_table_json.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105043/file/ERR1014384_FASTQ_otu_table_json.biom 3.0 metabarcoding +MGYA00105043 ERR1014384_FASTQ_pruned.tree Taxonomic analysis Phylogenetic tree https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105043/file/ERR1014384_FASTQ_pruned.tree 3.0 metabarcoding +MGYA00105043 ERR1014384_FASTQ_readsWithpCDS.fasta.gz Sequence data Processed reads with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105043/file/ERR1014384_FASTQ_readsWithpCDS.fasta.gz 3.0 metabarcoding +MGYA00105043 ERR1014384_FASTQ_tRNA.fasta non-coding RNAs Predicted tRNAs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105043/file/ERR1014384_FASTQ_tRNA.fasta 3.0 metabarcoding +MGYA00105044 ERR1014373_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105044/file/ERR1014373_FASTQ.fasta.gz 3.0 metabarcoding +MGYA00105044 ERR1014373_FASTQ_16SrRNA.fasta Taxonomic analysis Reads encoding 16S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105044/file/ERR1014373_FASTQ_16SrRNA.fasta 3.0 metabarcoding +MGYA00105044 ERR1014373_FASTQ_23SrRNA.fasta Taxonomic analysis Reads encoding 23S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105044/file/ERR1014373_FASTQ_23SrRNA.fasta 3.0 metabarcoding +MGYA00105044 ERR1014373_FASTQ_5SrRNA.fasta Taxonomic analysis Reads encoding 5S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105044/file/ERR1014373_FASTQ_5SrRNA.fasta 3.0 metabarcoding +MGYA00105044 ERR1014373_FASTQ_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105044/file/ERR1014373_FASTQ_CDS_annotated.faa.gz 3.0 metabarcoding +MGYA00105044 ERR1014373_FASTQ_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105044/file/ERR1014373_FASTQ_CDS_unannotated.faa.gz 3.0 metabarcoding +MGYA00105044 ERR1014373_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105044/file/ERR1014373_FASTQ_GO.csv 3.0 metabarcoding +MGYA00105044 ERR1014373_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105044/file/ERR1014373_FASTQ_GO_slim.csv 3.0 metabarcoding +MGYA00105044 ERR1014373_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105044/file/ERR1014373_FASTQ_InterPro.tsv.gz 3.0 metabarcoding +MGYA00105044 ERR1014373_FASTQ_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105044/file/ERR1014373_FASTQ_ORF_unannotated.ffn.gz 3.0 metabarcoding +MGYA00105044 ERR1014373_FASTQ_interproscan.fasta.gz Sequence data Processed reads with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105044/file/ERR1014373_FASTQ_interproscan.fasta.gz 3.0 metabarcoding +MGYA00105044 ERR1014373_FASTQ_noFunction.fasta.gz Sequence data Processed reads without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105044/file/ERR1014373_FASTQ_noFunction.fasta.gz 3.0 metabarcoding +MGYA00105044 ERR1014373_FASTQ_otu.tsv Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105044/file/ERR1014373_FASTQ_otu.tsv 3.0 metabarcoding +MGYA00105044 ERR1014373_FASTQ_otu_table_hdf5.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105044/file/ERR1014373_FASTQ_otu_table_hdf5.biom 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https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105044/file/ERR1014373_FASTQ_tad-plots.svg 3.0 metabarcoding +MGYA00105045 ERR1014378_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105045/file/ERR1014378_FASTQ.fasta.gz 3.0 metabarcoding +MGYA00105045 ERR1014378_FASTQ_16SrRNA.fasta Taxonomic analysis Reads encoding 16S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105045/file/ERR1014378_FASTQ_16SrRNA.fasta 3.0 metabarcoding +MGYA00105045 ERR1014378_FASTQ_23SrRNA.fasta Taxonomic analysis Reads encoding 23S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105045/file/ERR1014378_FASTQ_23SrRNA.fasta 3.0 metabarcoding +MGYA00105045 ERR1014378_FASTQ_5SrRNA.fasta Taxonomic analysis Reads encoding 5S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105045/file/ERR1014378_FASTQ_5SrRNA.fasta 3.0 metabarcoding +MGYA00105045 ERR1014378_FASTQ_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105045/file/ERR1014378_FASTQ_CDS_annotated.faa.gz 3.0 metabarcoding +MGYA00105045 ERR1014378_FASTQ_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105045/file/ERR1014378_FASTQ_CDS_unannotated.faa.gz 3.0 metabarcoding +MGYA00105045 ERR1014378_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105045/file/ERR1014378_FASTQ_GO.csv 3.0 metabarcoding +MGYA00105045 ERR1014378_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105045/file/ERR1014378_FASTQ_GO_slim.csv 3.0 metabarcoding +MGYA00105045 ERR1014378_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105045/file/ERR1014378_FASTQ_InterPro.tsv.gz 3.0 metabarcoding +MGYA00105045 ERR1014378_FASTQ_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105045/file/ERR1014378_FASTQ_ORF_unannotated.ffn.gz 3.0 metabarcoding +MGYA00105045 ERR1014378_FASTQ_interproscan.fasta.gz Sequence data Processed reads with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105045/file/ERR1014378_FASTQ_interproscan.fasta.gz 3.0 metabarcoding +MGYA00105045 ERR1014378_FASTQ_noFunction.fasta.gz Sequence data Processed reads without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105045/file/ERR1014378_FASTQ_noFunction.fasta.gz 3.0 metabarcoding +MGYA00105045 ERR1014378_FASTQ_otu.tsv Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105045/file/ERR1014378_FASTQ_otu.tsv 3.0 metabarcoding +MGYA00105045 ERR1014378_FASTQ_otu_table_hdf5.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105045/file/ERR1014378_FASTQ_otu_table_hdf5.biom 3.0 metabarcoding +MGYA00105045 ERR1014378_FASTQ_otu_table_json.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105045/file/ERR1014378_FASTQ_otu_table_json.biom 3.0 metabarcoding +MGYA00105045 ERR1014378_FASTQ_pruned.tree Taxonomic analysis Phylogenetic tree https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105045/file/ERR1014378_FASTQ_pruned.tree 3.0 metabarcoding +MGYA00105045 ERR1014378_FASTQ_readsWithpCDS.fasta.gz Sequence data Processed reads with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105045/file/ERR1014378_FASTQ_readsWithpCDS.fasta.gz 3.0 metabarcoding +MGYA00105045 ERR1014378_FASTQ_tRNA.fasta non-coding RNAs Predicted tRNAs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105045/file/ERR1014378_FASTQ_tRNA.fasta 3.0 metabarcoding +MGYA00105046 ERR1014375_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105046/file/ERR1014375_FASTQ.fasta.gz 3.0 metabarcoding +MGYA00105046 ERR1014375_FASTQ_16SrRNA.fasta Taxonomic analysis Reads encoding 16S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105046/file/ERR1014375_FASTQ_16SrRNA.fasta 3.0 metabarcoding +MGYA00105046 ERR1014375_FASTQ_23SrRNA.fasta Taxonomic analysis Reads encoding 23S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105046/file/ERR1014375_FASTQ_23SrRNA.fasta 3.0 metabarcoding +MGYA00105046 ERR1014375_FASTQ_5SrRNA.fasta Taxonomic analysis Reads encoding 5S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105046/file/ERR1014375_FASTQ_5SrRNA.fasta 3.0 metabarcoding +MGYA00105046 ERR1014375_FASTQ_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105046/file/ERR1014375_FASTQ_CDS_annotated.faa.gz 3.0 metabarcoding +MGYA00105046 ERR1014375_FASTQ_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105046/file/ERR1014375_FASTQ_CDS_unannotated.faa.gz 3.0 metabarcoding +MGYA00105046 ERR1014375_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105046/file/ERR1014375_FASTQ_GO.csv 3.0 metabarcoding +MGYA00105046 ERR1014375_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105046/file/ERR1014375_FASTQ_GO_slim.csv 3.0 metabarcoding +MGYA00105046 ERR1014375_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105046/file/ERR1014375_FASTQ_InterPro.tsv.gz 3.0 metabarcoding +MGYA00105046 ERR1014375_FASTQ_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105046/file/ERR1014375_FASTQ_ORF_unannotated.ffn.gz 3.0 metabarcoding +MGYA00105046 ERR1014375_FASTQ_interproscan.fasta.gz Sequence data Processed reads with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105046/file/ERR1014375_FASTQ_interproscan.fasta.gz 3.0 metabarcoding +MGYA00105046 ERR1014375_FASTQ_noFunction.fasta.gz Sequence data Processed reads without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105046/file/ERR1014375_FASTQ_noFunction.fasta.gz 3.0 metabarcoding +MGYA00105046 ERR1014375_FASTQ_otu.tsv Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105046/file/ERR1014375_FASTQ_otu.tsv 3.0 metabarcoding +MGYA00105046 ERR1014375_FASTQ_otu_table_hdf5.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105046/file/ERR1014375_FASTQ_otu_table_hdf5.biom 3.0 metabarcoding +MGYA00105046 ERR1014375_FASTQ_otu_table_json.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105046/file/ERR1014375_FASTQ_otu_table_json.biom 3.0 metabarcoding +MGYA00105046 ERR1014375_FASTQ_pruned.tree Taxonomic analysis Phylogenetic tree https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105046/file/ERR1014375_FASTQ_pruned.tree 3.0 metabarcoding +MGYA00105046 ERR1014375_FASTQ_readsWithpCDS.fasta.gz Sequence data Processed reads with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105046/file/ERR1014375_FASTQ_readsWithpCDS.fasta.gz 3.0 metabarcoding +MGYA00105046 ERR1014375_FASTQ_tRNA.fasta non-coding RNAs Predicted tRNAs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105046/file/ERR1014375_FASTQ_tRNA.fasta 3.0 metabarcoding +MGYA00105047 ERR1014382_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105047/file/ERR1014382_FASTQ.fasta.gz 3.0 metabarcoding +MGYA00105047 ERR1014382_FASTQ_16SrRNA.fasta Taxonomic analysis Reads encoding 16S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105047/file/ERR1014382_FASTQ_16SrRNA.fasta 3.0 metabarcoding +MGYA00105047 ERR1014382_FASTQ_23SrRNA.fasta Taxonomic analysis Reads encoding 23S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105047/file/ERR1014382_FASTQ_23SrRNA.fasta 3.0 metabarcoding +MGYA00105047 ERR1014382_FASTQ_5SrRNA.fasta Taxonomic analysis Reads encoding 5S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105047/file/ERR1014382_FASTQ_5SrRNA.fasta 3.0 metabarcoding +MGYA00105047 ERR1014382_FASTQ_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105047/file/ERR1014382_FASTQ_CDS_annotated.faa.gz 3.0 metabarcoding +MGYA00105047 ERR1014382_FASTQ_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105047/file/ERR1014382_FASTQ_CDS_unannotated.faa.gz 3.0 metabarcoding +MGYA00105047 ERR1014382_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105047/file/ERR1014382_FASTQ_GO.csv 3.0 metabarcoding +MGYA00105047 ERR1014382_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105047/file/ERR1014382_FASTQ_GO_slim.csv 3.0 metabarcoding +MGYA00105047 ERR1014382_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105047/file/ERR1014382_FASTQ_InterPro.tsv.gz 3.0 metabarcoding +MGYA00105047 ERR1014382_FASTQ_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105047/file/ERR1014382_FASTQ_ORF_unannotated.ffn.gz 3.0 metabarcoding +MGYA00105047 ERR1014382_FASTQ_interproscan.fasta.gz Sequence data Processed reads with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105047/file/ERR1014382_FASTQ_interproscan.fasta.gz 3.0 metabarcoding +MGYA00105047 ERR1014382_FASTQ_noFunction.fasta.gz Sequence data Processed reads without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105047/file/ERR1014382_FASTQ_noFunction.fasta.gz 3.0 metabarcoding +MGYA00105047 ERR1014382_FASTQ_otu.tsv Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105047/file/ERR1014382_FASTQ_otu.tsv 3.0 metabarcoding +MGYA00105047 ERR1014382_FASTQ_otu_table_hdf5.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105047/file/ERR1014382_FASTQ_otu_table_hdf5.biom 3.0 metabarcoding +MGYA00105047 ERR1014382_FASTQ_otu_table_json.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105047/file/ERR1014382_FASTQ_otu_table_json.biom 3.0 metabarcoding +MGYA00105047 ERR1014382_FASTQ_pruned.tree Taxonomic analysis Phylogenetic tree https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105047/file/ERR1014382_FASTQ_pruned.tree 3.0 metabarcoding +MGYA00105047 ERR1014382_FASTQ_readsWithpCDS.fasta.gz Sequence data Processed reads with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105047/file/ERR1014382_FASTQ_readsWithpCDS.fasta.gz 3.0 metabarcoding +MGYA00105047 ERR1014382_FASTQ_tRNA.fasta non-coding RNAs Predicted tRNAs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105047/file/ERR1014382_FASTQ_tRNA.fasta 3.0 metabarcoding +MGYA00105048 ERR1014372_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105048/file/ERR1014372_FASTQ.fasta.gz 3.0 metabarcoding +MGYA00105048 ERR1014372_FASTQ_16SrRNA.fasta Taxonomic analysis Reads encoding 16S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105048/file/ERR1014372_FASTQ_16SrRNA.fasta 3.0 metabarcoding +MGYA00105048 ERR1014372_FASTQ_23SrRNA.fasta Taxonomic analysis Reads encoding 23S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105048/file/ERR1014372_FASTQ_23SrRNA.fasta 3.0 metabarcoding +MGYA00105048 ERR1014372_FASTQ_5SrRNA.fasta Taxonomic analysis Reads encoding 5S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105048/file/ERR1014372_FASTQ_5SrRNA.fasta 3.0 metabarcoding +MGYA00105048 ERR1014372_FASTQ_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105048/file/ERR1014372_FASTQ_CDS_annotated.faa.gz 3.0 metabarcoding +MGYA00105048 ERR1014372_FASTQ_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105048/file/ERR1014372_FASTQ_CDS_unannotated.faa.gz 3.0 metabarcoding +MGYA00105048 ERR1014372_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105048/file/ERR1014372_FASTQ_GO.csv 3.0 metabarcoding +MGYA00105048 ERR1014372_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105048/file/ERR1014372_FASTQ_GO_slim.csv 3.0 metabarcoding +MGYA00105048 ERR1014372_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105048/file/ERR1014372_FASTQ_InterPro.tsv.gz 3.0 metabarcoding +MGYA00105048 ERR1014372_FASTQ_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105048/file/ERR1014372_FASTQ_ORF_unannotated.ffn.gz 3.0 metabarcoding +MGYA00105048 ERR1014372_FASTQ_interproscan.fasta.gz Sequence data Processed reads with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105048/file/ERR1014372_FASTQ_interproscan.fasta.gz 3.0 metabarcoding +MGYA00105048 ERR1014372_FASTQ_noFunction.fasta.gz Sequence data Processed reads without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105048/file/ERR1014372_FASTQ_noFunction.fasta.gz 3.0 metabarcoding +MGYA00105048 ERR1014372_FASTQ_otu.tsv Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105048/file/ERR1014372_FASTQ_otu.tsv 3.0 metabarcoding +MGYA00105048 ERR1014372_FASTQ_otu_table_hdf5.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105048/file/ERR1014372_FASTQ_otu_table_hdf5.biom 3.0 metabarcoding +MGYA00105048 ERR1014372_FASTQ_otu_table_json.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105048/file/ERR1014372_FASTQ_otu_table_json.biom 3.0 metabarcoding +MGYA00105048 ERR1014372_FASTQ_pruned.tree Taxonomic analysis Phylogenetic tree https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105048/file/ERR1014372_FASTQ_pruned.tree 3.0 metabarcoding +MGYA00105048 ERR1014372_FASTQ_readsWithpCDS.fasta.gz Sequence data Processed reads with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105048/file/ERR1014372_FASTQ_readsWithpCDS.fasta.gz 3.0 metabarcoding +MGYA00105048 ERR1014372_FASTQ_tRNA.fasta non-coding RNAs Predicted tRNAs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00105048/file/ERR1014372_FASTQ_tRNA.fasta 3.0 metabarcoding
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis/ERP000673_SL_FASTA_16SrRNA.fasta Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,92 @@ +>NODE_584_length_121_cov_13.239670 +GGGTTTAAAGGGAGCGTAGGCGGGATGTTAAGTCAGCGGTTAAATGTCGATGCCCAACAT +CGTCAAGCCGTTGATACTGGTGTCCTTGAATGCACACAAGGGAGATGGAATTCGTCGTGT +AGCGGTGAAATGCTTAGATAT +>NODE_2574_length_96_cov_3.916667 +GCATCGCCATCTCATACCGAAAAACTTTGTTCATAATCCCATGCAGGAAAATGAAAACAT +CGGGTATTAGTCTTACTTTCGCAAGGTTATTCCCGAGTATGAGGCAGGTTCGATAC +>NODE_13225_length_100_cov_6.370000 +AGCACATAAAGCTTTGGTTCTATGGGGATGCCCCCTAAGAACATTATGCGGTATTAGCAG +TCGTTTCCGACTGTTGTCCCCCACTGAAAGGCAGGTTTCTCACGCGTTACTCACCCGTTC +>NODE_25366_length_146_cov_20.068493 +GTTCGGGTTAATCGTATGACCGCGGTGGCTGGCACGAAATTTACCAACCCTATTTAACAT +GGCTTAGTCGAACTTTCGTTCATGGCTTAATTTTTACCACTGCTGTATCCCGTGGGGGTG +TGGCTAAGCAAGGCGTCATAAGCTACGTGTGTGTGCTTGATGCCTG +>NODE_36498_length_88_cov_5.659091 +GTTACGACTTCACCCCAATCGCTAATCACACCCTCGGAGCATCCCTCCTTGCGGTTAGGC +CTGCTACTTCAGGTGCAACCAACTCTCGTGGTGTGACGGGCGGTGTGT +>NODE_36820_length_93_cov_5.978495 +ACTGGAGAGGTGGGCGGAACTACAAGTGTAGAGGTGAAATTCGTAGATATTTGTAGGAAT +GCCGATGGAGAAGTCAGCCCACTGGACAGATACTGACGCTGAAGCGCGAAAGC +>NODE_36873_length_156_cov_11.096154 +GGCCGTTACCCCGCCAACTAGCTAATCGTACGCATCCTCATCTGTCACCGATGAATCTTT +AATGACTAAGCGATGCCGCCAAGTCATACCATCGGGTATTAATCTTTCTTTCGAAAGGCT +ATCCCCGAGTGACAGGTAGATTGGATACGTGTTACGCACCCGTGCGCCGGTCGCCA +>NODE_37374_length_100_cov_5.590000 +TGTAAAGGGAGCGTAGACGGCATGGCAAGTCTGATGTGAAAGGCAGGGGCTCAACTCCTG +GACTGCATTGGAAACTGTCAAGCTTGAGTGCCGGAGGGGTAAGCGGAATTCCTAGTGTAG +>NODE_39691_length_82_cov_9.073171 +TGTTACGACTTCACCCCAATTACCGGACCCACCTTCGGCCGCGCCCTCCTTGCGGTTAGA +CTACGGACTTCGGGTGTTCCCGACTCTCATGGTGTGACGGGC +>NODE_54149_length_83_cov_6.915663 +TACACACGTGCTACAATGGCGTAAACAAAGGGAAGCAGAGCCGCGAGGCCGAGCAAATCT +CAAAAATAACGTCTCAGTTCGGATTGTAGTCTGCAACTCGACT +>NODE_58207_length_124_cov_4.540323 +CTAATCAGACGCGAGTCCATCTTTGACCGCTAATTCACTTTAACAGATTAATCATGCGAT +CATTCTGTTTCATCAGGTATTAATCCCAGTTTCCCGAGGCTATCCCTGTGTCAAAGGCAG +GTTACTCACGTGTTACTCACCCGT +>NODE_86541_length_396_cov_14.143939 +AAGATACTTGTGCTTACTATTCTTCCTTTTTAGGGTTTGCTGAGGATGGCGGTATATAGA +CTGGATTAGCAAGGGATGGTGAGGTGTATCGGGGTTTATCGATTATAGAACAGGCTCCTC +TAGAGGGATGTAAAGCACCGCCAAGTCCTTTGAGTTTTAAGCTGTTGCTAGTAGTTCTCT +GGCGGATAGGTTTGTTTAATTATCTATCTGAGTTTAGGGCTAGGCATAGTGGGGTATCTA +ATCCCAGTTTGGGTCTTAGCTATCGTGTGATCGGATGTGTTAAAGCTACTTTCGTGTCTT +ATTTTCACATTAACTGCAGCTTTCTACGGCTTAGTTAAGATTTAACTTTATCGTTGGAAT +TTGCTCTGTAACACGCTTTACGCCGTATGTCTATTAGTTCGGGTTAATCGTATGAC +>NODE_93022_length_88_cov_6.454545 +TGGGGAATATTGGACAATGGACCAAAAGTCTGATCCAGCAATTCTGTGTGCACGATGAAG +TTTTTCGGAATGTAAAGTGCTTTCAGTTGGGACGAAGAACGTGACGGT +>NODE_139095_length_87_cov_6.597701 +CTAGCGATTCCAACTTCATGTACTCGAGTTGCAGAGTACAATCCGAACTGAGAATAGTTT +TCTGAGATTAGCTTCCCTTCACAGGTTCGCCACTCTCTGTACTACCC +>NODE_150659_length_94_cov_2.893617 +TATGCATTTCACCGCTACACAACGCATTCCGCATACCTCGACGCCACGCTAGATAATCAG +TTTCAACGGCTGAGCGGGGTTGAGCCCCGCGATTTTACCGCTGACTTGACAGCC +>NODE_153115_length_97_cov_4.041237 +TAACACGTGAGCAACCTGCCTCATACTACGGGATACCTACGGGAAGCTGTAGTTAATACG +GTATAAGACCACACTCTGGCATCGGAGAGGGGTAAAAGATTTATCGGTATGAGATGG +>NODE_163044_length_88_cov_2.090909 +GTACCGCTAACGCTTTGATACATCGAAGATGCCTTCAATGTACGTTATTATGTATTAGTA +TGCTTTTCAGCATGTTATCCATATGTATAGGGCAGGTTACCCACGCGT +>NODE_185122_length_110_cov_5.163636 +TATTGGGCGTAAAGAGTGAGTAGGCGGTCACTTAAGTCTGTAGTCAAAAGCAGTTGCTCA +ACAACTGTTCGCTATGGAAACTGGGTGGCTAGAGTGCAGGAGAGGTTAGCGGAATTCCAT +GTGTAGCGGT +>NODE_214054_length_88_cov_3.659091 +GTACCGCTAACGCTTTGATATATTAGTCATGCGACTTTCATATTTCATCTCGTATTAGCA +TACCTTTCGGTATGTTATCCGTGTGTACAGGGCAGGTTACCCACGCGT +>NODE_263966_length_105_cov_6.971428 +ATACGGCGGCTCAACCGTCGGACTGCAGTTGATACTGGAGGTCTTGAGTGCACACAGGGA +TACTGGAATTCATGGTGTAGCGGTGAAATGCTCAGATATCATGAGGAACTCCGATCGCGA +AGGCA +>NODE_345204_length_99_cov_9.080808 +TAGGCGGTCTGTCGCGTCTGGTGTGAAATCCCATGGCTCAACTGTGGGCTTGCATCGGGT +ACGGGCAGACTAGAGTACTGTAGGGGAGACTGGAATTCCTGGTGTAGCGGTGGAATGCG +>NODE_355328_length_81_cov_2.580247 +TAAGTCGGGTGTGAAACCTCCAGGCTCAACCTGGAGACGCCACCCGATACTGCTATAGCT +AGAGTCCAGTAGGGGAGTGCGGAATTCCCGGTGTAGCGGTG +>NODE_363653_length_121_cov_7.801653 +CACCAACAAGCTGATAGGCCGCGAGCCCATCCCCCACCGAAAAACTTTCCAACACCCACC +ATGCGGCAAGTGTTCATATCCGGTATTAGACCTCGTTTCCAAGGCTTATCCCGAAGTAGG +GGGCAGGTTGCTCACGTGTTA +>NODE_433069_length_82_cov_7.292683 +ATGTCCTGGGCTACACACGTAATACAATGGTGGTTAACAGAGGGATGCAATACCGCGAGG +TGGAGCGAATCCCTAAAAGCCATCTCAGTTCGGATTGCAGGC +>NODE_506792_length_138_cov_5.282609 +CGGACGGGTGAGTAACGCGTAAAGAACTTGCCCTGCAGTTCGGGACAACATCTGGAAACG +GATGCTAATACCGGGTATTATACTTTAGTCGCATGACTTTTGTATGAAAGCTATATGCGC +TGCAGGAGAGCTTTGCGTCCTATTAGCTTGTTGGTGAA +>NODE_962963_length_105_cov_4.171429 +CAAGTCGAGGGGCAGCATGATTGGTAGCAATACCGATTGACGGCGACCGGCGCAAGGGTG +CGTAACGCGTGAGCAACTTGCCCTCATCAGTGGGATAACCGGTGGAAACGCCGACTAATA +CCACA
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis/ERP000673_SL_FASTA_23SrRNA.fasta Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,325 @@ +>NODE_384_length_124_cov_9.330646 +ATAGCTCACTGGTCAAGTGATTCCGCGCCGACAATGTAGCGGGGCTCAAGCACACCACCG +AAGCCGTGGCACTCATACGTTAGCCCAGCATGCGCCCTTGTGGTGTGTGTTCAGGTGTGT +GGGTGGGTAGGGGAGCGTCGTGTG +>NODE_1018_length_123_cov_9.203252 +TGGGCTGTTTCCCTTTTGACTACGGATTTTATTACTCGCAGTCTGACTGCTGGTAAGCAT +TTATATGGCATTCTTAGTTTGATAGGGTTCAGTAAGCTTATCGCCCCCTAGCCCATTCAG +TGCTTTACCGCCATTAAACTCAT +>NODE_2772_length_124_cov_4.137097 +CCGCCCCAGTCAAACTACCCGCCTAACACTGTCCCTCGACCGGTAATGATCGTAGGTTAG +AGCAACAATACACCAAGAGTGGTATCCCAACGGCGACTCCACTCACACTGACGTGCAAGC +TTCATAGTCTCCCACCTATCCTGT +>NODE_3311_length_122_cov_3.450820 +AGTCAAACTCCCCACCTGACATTGTCCCCCAGCCGGTTCACGGCTGCTGGTTAGAAATCC +AGTACTGCAAGGGTGGTATCCCAACAGCGGCTCCGTAGCGACTGGCGTCACTACTTCTCA +GCCTCCCACCTATCCTGTACAT +>NODE_3671_length_188_cov_11.329787 +AAACGGTTAATATTCCGTTACCGGAAATACGCGTGATGTGGAGACGCAGGAGTGACACAG +CCGCCGTCTGACGGAAAAGACGGTTAAAGGCATTAGGTTATGAGGAAGGCAGGCAAATCC +ACCTTCTGAGCTGAACGCTGATAGTACACAGCGCTCTTCGGAGCAATGTGATAGCGCTGG +TAATCATGCTGCCGAGAAAATCCGCTAA +>NODE_6703_length_126_cov_94.476189 +TCGCCTACCTTACGGTATACATAGTCTTCAACTATGTGGGTTTTCCCATTCGGATACCTG +TGGATCTACGTTCACTTACAACTCCCCACAGCGTTTCGCCGTTCGTCGCGTCCTTCATCG +CCTTCTAGTGCCTAGACATCCTCTCT +>NODE_12284_length_315_cov_15.771428 +TGAAATTTTTAGGGTTTTTAGGCAAGTTTAAAGTTGAACTAAAATTCTGTTCTGGGCAAC +CAGCTATCACCAGGCTCGATAGGCTTTTCACCTCTACCCACAAATCTTCTCACTATTTTG +CGACATAGACGAGTTCATCCTGTAAAGATTGTTCATGGGTAGCTCGTCTGGTTTCGGGGG +GTCTAGCTTAAGTTCTCTTTGTTAGACTATGTCTAGCTAATTCATTATGCAAAAGGTACA +AGGTGTAAGCTTTGCTGTGTGGTGCTTTTAATTTATTCTTTCATCTTTCCCTTGCGGTAC +TATCTCTATAGCGCCAAATCAAATTTCTATCTCCT +>NODE_13089_length_181_cov_4.856354 +ACTTTTCTCGACAGTGTGAAATCAGCTGCTTCGCTACTTAGTTTCGCTCCCCATCGTATC +CTAGCATTAACCGAACGGATTTGCCTATCCGGTCTGCCTCAATACTTAGACACACATAAC +CAACAGTGTGCTCAGCTTATCCTACTGTGTCATCCCTTCTCTCAAACAATTATCGGTAGT +ACAGGAATATCAACCTGTTGT +>NODE_17993_length_85_cov_72.611763 +ATAGCTTTAGGGCTAGCGTCTATCAAGACTTTTATGAAGGTAGAGCACTGAATAGTAGAT +GGTCCCACCTCGGGATACTGATATTAATCAAACTCCGAATGTTAT +>NODE_21518_length_112_cov_6.366071 +TAGTGGCGAGCGAAAGCGGAAGAGGCCAAACCAGAGGTAGCAATATCTCTGGGGTTACGG +ACAGCAACATGAGAGCAAAAACTTAGTTAAACGGCATGGGAAGGCCGGCCACAGAGTGTG +AGAGCCACGTAA +>NODE_21592_length_146_cov_5.821918 +GTAATAGCTCACTGGTCGAGAGGTCCTGCGCCGAAAATGTCCGGGGCTGAAACGCACCAC +CGAAGCTGAGGAACCGAAAGGTTGGTAGAGGAGCATTGCATACGAGAAGAAGCTGTACCG +TAAGGAGCAGTGGATTTTTAAGAAGAGAGAATGCCGGAATGAGTAG +>NODE_22636_length_89_cov_12.067416 +GTTCGATTGGAATTTCTCCGCTATCCACAGCTCATCCCATGGTTTTTCAACACCAACGTG +GTTCGGACCTCCACGGAATTTTACTTCCGCTTCATCCTGGCCATGGATA +>NODE_23298_length_184_cov_5.581522 +TTAAATGAAGCAGTGACACAGAAGGATAGTCAAAGCGCGACGATGGAAGATTGCGTCCAA +ATCATGAGGCTGACGAGTAGTGAAGTACGCTTGTCGAGAAGGCTAGGTGATGATGGGGAG +TGAAAATAGTAACGAAGTTGATGAATTCACGCTGGCGAGAAAAGCTGCTAAATATGTTAA +GAAGTGCCCGTACCGCAAACCGAC +>NODE_28928_length_91_cov_8.868132 +AGTGATCTACCCTTGTCCAGGTTGAAGTCCGGGTAACACCGGATGGAGGACCGAACCAAT +AAGCGTTGAAAAGCTTCTGGATGAGGTGAGGGTAGGAGTGAAAGGCCAATC +>NODE_34609_length_95_cov_3.347368 +AAACTTACCACCGAAGCTATGGATGTACGTAAGTACATGGTAGAGGAGCTTCCTGTATGG +GCAGAAGTCGTACCGAAAGGAGCGGTGGACTGTACAGGAGTGAGAATGTTGGCAT +>NODE_35870_length_80_cov_14.287500 +GGTATCCTGAGTAGCGCGGGGCACGAGGAATCCTGCGTGAATCCGCCGGGACCATCCGGC +AAGGCTAAATACTCGTGAGAGACCGATAGTGAACCAGTAC +>NODE_36736_length_125_cov_8.632000 +TCCCTCCACACGCCCTATACATTCAGGCGCGGGTAACCGAACATGACTTCGGCTGGGTTC +CCCCATTCGGAGACCCTCGGATCACAGCTCGTCTGCCAACTCCCCGAGGATTATCGCAGG +CTACAACGTCCTTCTTCGGCTCCTA +>NODE_36766_length_98_cov_16.928572 +ACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCTAGCTGCGAGAA +TTAATGTGAATTGCAGGACACATTGATCATCGACACTTCGAACGCACTTGCGGCCCCG +>NODE_41922_length_151_cov_7.350993 +CCCGCGCTACTCAGGATACCACTAGCACCAGGGATTCTTCGGATAAGGGGCTGTCACCCT +CTATGGCGCAGATTTCCAACTGCTTCTCCTCAAATCCTTTCGTACATGTCGTGGTCCTAC +AACCCCCATGAGGCCGGAACCTCATGGGTTTGGGATCTTCCGCGTTCGCTC +>NODE_47034_length_312_cov_5.740385 +GTATTCTCTACCTGACCACCTGAGTCGGTTTAGGGTACGGGCGGCTAGTCCCTCGCGTCG +AGGCTTTTCTAGGCAGCATAGGATCACCAGATTCCCGCATACACGGTCTCTATCAGCTCT +CACCCTTCATGCCTCACGGATTTACCTATGAGACGGGCTACAACCTTGGACATGGACAAC +CATCGCCACGCCTGGCTACCTTCCTGCGTCACCCCTGTTAACACGCTTACCTACTACCGG +ATCAGGTCCCACGCCTCCCCCACGATGAGACCCGAAGGTCTCGGTGTGGGCTCAGGATGG +TTAGTATCACCGGGCTCGGTATGGTCGGTACT +>NODE_50694_length_123_cov_7.691057 +GAGCCGATGAAGGACGTGGTAAGCTGCGATAAGCTCGGGTTAGTTGCAATCGAACTTTGA +CCCCGAGATTTCCGAATGGAGCAATCCGCTAAGTTGAAGACTTAGCACGAAAGAGGGAAC +CGCGTGAACTGAAACATCTAAGT +>NODE_53238_length_184_cov_5.402174 +TCACGGACTTCGCTACTAAACTTCGCTCCGCATCACAGCTTCCCATTGCCACCCGGATTT +GCCTAAGTGACTGGTACCCTGCTTGCACCGGGCTTTCCATTCCCGGCTTCCGCTTTCCTT +ACGTGTCCCCACAGTTCTGTTATACCGCAGTACAGGAATCTCCACCTGTTGTCCATCGGC +TACGGCTCTCGCCCTCGCCTTAGG +>NODE_58197_length_115_cov_13.130435 +CGTGGATAATAATCGGGTATGAAACATGCTGCCGAAGCTATGGGATCAGAAATGATCGGT +AGGGGAGCATTCCTGTCTGCCTTGAAGGCGCTGCGTGAGCAGTTCTGGAGCGTCAGGAAA +AGCAAATGTAGGTAT +>NODE_62881_length_169_cov_1.810651 +CCATGCACTGTCCCCAGCCCGGATAACGGGCCTAGGTTAGAACCTCAAACACACCAGGGT +GGTATTTCAACGTTGGCTCCACGATGGCTAGCGCCACCGCTTCAAAGTCTCCCAGCTATC +CTACACAGAACTCACTAAAGTCCAATGCAAAGTTGTAGTAAAGGTGCACGGGGTCTTTCC +GTCTAGTTG +>NODE_62971_length_91_cov_11.780220 +AGTTCCTTAACCGTGAATCTTCCAAGCGCCTTAGTATTTTCAACCCGACTACGTGTGTCC +GTTTGCGGTACGGGTGCCTGCAGCGTTAAGCTTAGCGGATTTTCTCGGCAG +>NODE_64808_length_113_cov_9.460177 +GGCTCTTTCCCTTTTGACCACCCAACTTATCTCGTGTAGTCTGACTCCCGATAATCGATT +ACGCGGCATTCGGAGTTTGATATTCTTCGGTAGGCTTTGACGCCCCCTAGGAAATTCAGT +GCTCTACCTCCGC +>NODE_67032_length_97_cov_5.257732 +AGCGAAAGCGAGTCCGAATAGGGCGATTGAGTCGCCGGGTCTAGACCCGAAGCGAAGTGA +TCTAGCCATGGGCAGGTTGAAGCGCCGGTAAGACGGCGTGGAGGACCGAACCCACCA +>NODE_74041_length_147_cov_9.340137 +AGCTCACTGGTCGAGTGATCTTGCGCGGAAAATTTAACGGGGCTAAGCATATAACCGAAG +CTTAGGGTTCGCAGCAATGCGAGCGGTAGGGGAGCGTCGAATACGGGGTGAAGTCGCACC +GGAAGGAGCGGTGGACTGTATTCGAGTGAGAATGCCGGAATGAGTAG +>NODE_78826_length_84_cov_4.154762 +ATACCGTAAGGAGTGGTGGACAGTACAGAAGTGAGAATGCTGGCATAAGTAGCGAAAAAC +AAGTGAGAATCTTGTTGACCGAATATCTAAGGTTTCCTGGGGAA +>NODE_80683_length_82_cov_3.890244 +TGGCTGCTTTCGAAAAGCTTTCGGGAAATTAGTACTGCTCGGCTTTGCCATCGCTGACTT +TACACCTGCAGCCTATCAACGTCGTAGTCTCCGACGTCCCTA +>NODE_83893_length_85_cov_2.458823 +GGTGATGGACAACAGGTTGAGATTCCTGTACCACCAATAATCGTTTGAGAGAAGGAATGA +CACAGTAGGATAAGCTAACCACACTGTTGGTTATGTGTGGCTAAG +>NODE_87964_length_96_cov_5.583333 +TTAGAGATTTTCTATGAAATTTAAAAAAGTAAGAAAAGTTATTAAGGGCATGCGGAGGAT +GACTTGGCACTAATAGCAGATGAAGGACGCGAAAACCTGCGAAAAGCTTCGGGGAG +>NODE_89441_length_117_cov_9.786325 +TAACGGAATATTAACCGTTTTTCCATCGGCCTCGCCGTTAGGCTTATCCTTAGGGTCCGA +CTTACCCAGGGGCGATTAACGTAGCCCTGGAAACCTTGGTCTTGCGGCGAGGGGGCATCT +CACCCCCTTTATCGTTA +>NODE_91511_length_96_cov_4.270833 +GCCACAAGATTAGATTTCTCAGGGTCGTTGTAGACGACAACGTTGATAGGATGCAGGTGT +AAAGGTGGTAACATCAAAGCCGAGCATTACTAATTGCCCGTTCACTTTCTTTCTAA +>NODE_92559_length_140_cov_3.342857 +CCGGGGCTTAAACATAATACCGAAGCTTAGGATTTTAAGGTAACTTAAAGTGGTAGGGGA +GCGTTGTATGTGCGTTGAAGTCGTACCGCGAGGAGCGTTGGAGCGCATACAAGAGAGAAT +GCCGGTGTGAGTAACAAATAAGGGTGAGAATCCCTCACAC +>NODE_103378_length_338_cov_15.139053 +TTGATCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTTTAGAGTCCATAT +CAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACACCCCGATGGTGCAGCAGCTAT +CAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGCAAT +CCAGGTCGGTTTCTATCTATTACGCAATCTCTCCCAGTACGAAAGGACAAGAGAAATAAG +GCCCACTTCACCAAAGCGCCCTAAGTAAAATAGATGATATAATCTCAATCTAAATAACTC +ACACAACCCACCACCCGAGAGCCTCGGGTTTGTTAGGGTGGCAGAGCCCGGTAATTGC +>NODE_106910_length_138_cov_6.731884 +CGTGACTCGGGAACCGCATAGTGGACGCGTCACAACAAATCATTTTCAAGCCATGATAAA +GGTGTTGAAGTTATTGGCAGTTAGTACCGGTCAGCTCCACAGGTCGTTAGTCCCTGCTTC +CACATCCGGCCTATCAACCCAGTGGTCTTCTGGGTGCC +>NODE_107124_length_94_cov_3.861702 +AGTAGTGGCGAGCGAACGGGGAATAGCCCAAACCAAGTTTGTTACGGCAAGCTTGGGGTT +GTAGGACCACGACGTTATATGAAAGCATTGGAGAAGAACCTGCTGGAAAGCAAA +>NODE_108892_length_210_cov_4.100000 +TCACCTTAGGATTCTCTCCTTGACCACGTGTGTTCGTTCTCGGTACGGGCCATGTAAAGT +TAAGTTAGAAGCTTTTCTCGAGAACTGGCATCATATACTTCGCTACTCGTGCAAGCACTT +TCACTCCCCATCACGTTTTCGCCTTAAGAAGTAGGGATTTGCCTCTACTTCAGCTACCTC +GCTTGGACTGGCTATTCCAGCAGCCAGATATATTAGCCCTTTCTGTCACT +>NODE_119315_length_116_cov_8.267241 +CCCCAGTCAAACTACCCACCAAGCGCGGTCCTCGTATCACGAGTTAGGAACCAGACAGCC +AAAGGGCCGTATTTCAACAGCGGCTCCACACACACTGGCGTGCATGCTTCATTGCCTCCG +GCCTATCCTACACATC +>NODE_124443_length_84_cov_4.607143 +CACATTGCTCCTCTACCGATACACTTTCGTGTATCCCTAAACTTCGGTGTCAAGTTTTAG +CCCCGATAATCTTCGGCGCACCCCCACTCGACCAGTGAGCTATT +>NODE_126297_length_120_cov_5.733333 +CTTCAACCTGGACATGGATAGATCACCCGGTTTCGGGTCTACTCTCACTGACTCTGGCCC +TATTAAGACTTGGTTTCCCTACGGCTCCACACCTGAAGTGCTTAACCTTGCCAGTAAGCG +TAACTCGCCGGACCGTTCTA +>NODE_133450_length_154_cov_3.064935 +GATTATTCTCTCAAAATTGTATAATGAATATTTATTTGGTCAAGTCCTCGACCTATTAGT +ATGAGTCAGCTGAACATGTTACCACGCTTACACCTCTCACCTATCAACCTTGTGTTCTTC +AAGGGGTCTTACTGAATTAATCATGGGAAATCTAATCTTGAGGTGGGCTTCACG +>NODE_142369_length_99_cov_5.373737 +GGTGAAATTGTAGTAGCGGTAAAGATGCCGCTTACCCACGACAGGACGGAAAGACCCCGT +GGAGCTTTACTGTAGGCTGACATTGGATTTTGAGGTTAAATGTACAGGATAGGTGGGAG +>NODE_143344_length_94_cov_4.021276 +CCGGCGGTACTGTCACTCCTGCGTCTCCACGTCGCCCCTAAAGGTAGTACCGGAATATTA +ACCGGTTCTGCCATCGGCCTCGCCGTTCGGCTGAGCCTTAGGACCCGACTAACC +>NODE_154154_length_121_cov_2.504132 +GTCCTACTTTCGTACCTGCTTGATCCGTCGATCTCGCAGTCAAGCACGCTTATGCCATTG +CACTATCGTCACGATGTCCGACCGTAACTAGCGTACCTTCGAACTCCTCCGTTACGCTTT +GGGAGGAGACCGCCCCAGTCA +>NODE_157059_length_221_cov_10.619909 +TCCACTCTATTAAAAGAGATCTTTGACATATTGGACACAAACAAACGAAAAGCAAATCGA +GATATTACTCATTTCAGAAATGAAACTGAGTCAAGATATAACGAACAAAAGCTGAAAGTA +TAATCAACCATCTGTACATCAAATCTCAGCAATGAGGTGAGAGATACAGAAGAGTCGAGC +GAAAGTAGAAAAGGGCGTATGGCGGATGCCTAGGCTCTCACAGGCGATGAAGGACGTGAT +A +>NODE_171471_length_158_cov_4.367089 +GTCAAACTGCCCACCTAGCACTGTCTCCGTGGCTACAAACCACAGATTAGAATTTCAACA +TTGAATGGTTGGTATTCCACCGACAACTCCAGCACAGCTAGCGCCATGCTTTCATAGTTT +CCCAACTATCCTATACATGCAATATCAAAACCCAATACCAAGCTACAGTAAAGCTCCA +>NODE_190931_length_94_cov_2.265957 +AACTGTTTATTGAAAACACAGCACTCTGCTAAGACGAAAGTCGACGTATAGGGTGCTGTG +TTTTTAATAAACAGTCGCAGCCACCAATTTTTTGCAACCCATTCATGCTCAGAT +>NODE_201069_length_112_cov_4.258929 +TACCTACATTTGCTTTTCCACACGCTCCAGAATACCTCACGGTAAACCTTCAACGCCGAG +TGGAATGCTCCCCTACCGATACTTAATGTATCCCGTGGCTTCGGCAGCAAGCTTAATACC +CGATTATTATCC +>NODE_207188_length_90_cov_16.588888 +GTTCCTTAACCGTGAATCACCCAAGCGCCTCAGTATATTCAACCCGACCACGTGTGTCCG +TTTTCGGTACGGACGGAAATACGTTGTAGTTTAGCGGATTTTCTCGGCAG +>NODE_229835_length_83_cov_2.277108 +TGCCGGTGGAAACCTTAGGTTTACGGCGAATGGGTTTCTCACCCATTTTATCGCTACTCA +TGTCTGCATAATCCCTTCCAGAACCTCCAGCAGTCCTTACGGT +>NODE_231207_length_85_cov_5.247059 +ATTTGCATGGGTAGGGGAGCATTCCAAACGGCGCAGAAGGTGAATCGTGAGATTTGCTGG +AGCGTTTGGAAAAGAAAATGTAGGCATGAGTAACGACAACGCATG +>NODE_231396_length_101_cov_3.049505 +ACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTCGTGTCCGGACGTTAGCACCCGGTGCTC +TGTCTCCCAAGCTGTACTCGTCGGTATTCGGAGTTTGCCATGGTTTGGTAAGGCGCCATG +C +>NODE_235188_length_81_cov_7.037037 +CGCTCAAAGGTTCCCTCAGCCTGGTTGGTAATCAGGTTTCGAGTGCAAGTGCACAAGGGA +GCTTGACTGTGAGACCGACAGGTCGAGCAGGGACGAAAGTC +>NODE_235397_length_81_cov_5.814815 +GTATTCATGCATGGATACTTGGACATTACTCCAAGTGAGTTTCCTCATTCAGAAATCTTC +GGATCAATATGTATGTGCCATTCCCCGAAGCTTATCGCAGC +>NODE_237080_length_112_cov_4.491071 +TGGTCTGGGTTGTTTCCCTTTTGACGACGGAAGTTAACTCCCGTGGTCTCACTCCTGAGT +TATAGAATTATGGTATTCGGAGTTTGATTGGATTCAGTAAGCTATACGCCCCCTAGTCCA +TTCAGTGCTCTA +>NODE_239656_length_149_cov_3.865772 +TACGCTATCGGTCACTAGGTCGTATTTAGCCTTAGGAGATGGTCCTCCCGTATTCCCACA +AGATTCCTCGTGCCCCGTGGTACTCTGGATACTCACCGCTCGTCTCAGATTTCGAGTACA +GGAATTTCACCTTCTTTGTCCTGACTTTCCAGACAGTTCCTCTATCTTC +>NODE_243333_length_82_cov_9.109756 +GCTGAAAGCATCTAAGCGCGAAGTCCACTTCAAGATAAGATTTCCCACCGTAAGGTTAAG +ATCCCAGGAAGACTACCTGGTTGATAGGTCGGAGGTGTAAGT +>NODE_247392_length_99_cov_6.262626 +CATAATTCTACTGATCTAGAGAACCAATTATTGGACTAATCTCGATTAGTAAGACCAAAT +GGTCAAGCTAATAAGAGCGCAAGGGGAATGCCTTGGCATTAGGAGCCGATGAAGGACGT +>NODE_255564_length_208_cov_10.293269 +CGTTTGGAATTTCACCGCTAGCCACAGTTCATCGCCGGTCATTGCAACGAACGTGCGTTC +GGCCCTCCATGGAGCTTTACCTCCACTTCAGCCTGAGCATGGCTAGGTCACCTGGTTTCG +GGTCTATGGCAACTGACTTCATACGCGCTATTAACACTCGCTTTCGCTGCGCCTCCGAGA +CTGAATCTCTTAAGCTCGCCAGTTACTATAACTCGCCGGACCGTTCTA +>NODE_271154_length_95_cov_1.368421 +CGGGAGGGGAGTGAAATAGATCCTGAAACCGCATGCATACAGACAGTGGGAGCCCGCAAG +GGTGACCACGTACCTTTTGTATTATGGGTCAGCGACTTAATCTGGCAAGCAAGCT +>NODE_292329_length_90_cov_3.055556 +CTGCACGAATGGCGTAACGATGGCCACACTGTCTCCTCCTGAGACTCAGCGAAGTTGAAA +TGTTTGTGATGATGCAATCTCCCCGCGGAAAGACGGAAAGACCCCATGAA +>NODE_300471_length_254_cov_5.098425 +AGAGTATTTAGCCTTACGAGATCTGGTCCTCGCTGATTCACACAGAATTCCTCGTGCTCC +ATGTTACTTGGGAGAAAACGGACAAGTTAATGAGTTTACCTGTACAGGATTATCACCTTC +TACGATCTAGCTTTCCAACTAGTTCCAGTTCGGTCATTAACAATGTTGAGTACGTTGCAG +TTCCTCGTAGTTTTTCCCACAACCCCGCATAAACAACGGCTGCATCCTTGACATTTATGC +GGTTTAGGCTCATCCCCGTTCGCTCGCCGCTACT +>NODE_303124_length_108_cov_5.398148 +AGATTAATATTTCTGCGTCCCTCCATCACAATATATGACTGGCACAGAAATATTAATCTG +TTTTCCATTCGCCTACGCATTATAGCCTCGGCTTAGGTCCCGGCTTACTCAGGGAAGACA +AGCTTTAC +>NODE_321175_length_113_cov_4.265487 +GGATAATAATCGGGTATTAAACCCGCTGCCGAAGACGCGGAATGTCTTATGACATTGGTA +GGGGAGCATTCCATCGGCGCTGAAGGTGAAGGGACAACCTTTGCTGGAGCTTATGGAAAA +GCAAATGTAGGTA +>NODE_330659_length_84_cov_2.892857 +GGGAAAGGCGAAAAGAACCCTGGTGAAGGGAGTGAAATAGACCCTGAAACCGTCCGTTTA +CAAGCGGTAGGAGCAAGCAATTGCGACTGCGTGCCTTTTGCATA +>NODE_331951_length_229_cov_5.441048 +TGCTCTACCAACTGAGCTAAAGGTGCAGATCCTTAATTGTTTTGATACACCCTGAAAACT +GAACATCGAATCATCTTTTTGCAATCATTTAAAGACTTCACTGAGCCTGCGCTTTGGTCA +AGCTTTCGGCTTATTAGTATCAGTCAGCTACACACATTGCTGTGCTTCCACCTCTGACCT +ATCAACGACATAGTCTACGTCGAGCCTCAGTGGAGATCTTATCTTAGGGAGAGTTTCACG +CTTAGATGC +>NODE_347026_length_105_cov_3.142857 +CGGTTTGCGGTACGGGTACCAAACTTCTCCATAGAGGCTTTTCTTGGCAACATGGAATCA +GATACTTCGCTACTTAAATTTCACTCCCCATAACACCTCAGCATTAACTAGACGGATTTG +CCTTT +>NODE_380313_length_116_cov_2.232759 +GATAGGTCGGAGGTGTAAGTGCAGTAATGTATTTAGCTTACTGATACTAATAGATCGAGG +ACTTGACCAAGAAAAAAGATGGATTGTAAAACTAATGTACTCAGTTTTGAAGGTACAAAT +CTTCAATTAAATAATT +>NODE_423175_length_118_cov_3.245763 +AGATGCTTTCAGCGGTTATCTCTTCCGCACATAGCTACCCGGCGATGCCACTGGCGTGAC +AACCGATACACCAGAGGTGTGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCTCACCCTC +AAATCTCCAACGCCCACG +>NODE_427259_length_83_cov_4.457831 +TCGTGCTTAGATGCTTTCAGATCTTATCCCTTCCAAACTTAGCTACCCAGCCGTGCATTT +GGCAATGCAACTGGTGCACCAGCGGTTTGTCCATCCCGGTCCT +>NODE_431067_length_91_cov_3.241758 +AAGGCGTAGGCGATGGACAATTGGTTGATATTCCAATACTGCCAAACTTCGTTTGACAAA +TGGGGTGACGCAAAAGGATAGGATGTGCGCACTGTTGGAGTGTGCGTCTAA +>NODE_470228_length_121_cov_2.082645 +GATGGAAAACGGGTCAACATTCCCGTACTGCCGGTTGACGATAAAGACCGATGGGGTGAC +GCAGGAGGGTAGCTCAGCCCAGGCGATGGTTGTCCTGGGGTAAGCGTGTAGACCGGGGAC +CAGGTAAGTCCGGGCCCCATC +>NODE_484966_length_108_cov_3.138889 +CTATTGTCATCCTTTACCCTTAAACCGTCTTGGTTATGCCCTCGACCGATTAGTAACAGT +CAGCTGCATACATTACTGTACTTCCACCTCTGCCCTATCTACCTCGTCGTCTTCAAGGGG +TCTTACTA +>NODE_492925_length_108_cov_4.379630 +CATAGAGACTTTTCTTGGCAGCGTGGAATCAGATACTTCGTCAAAAATGACTCCCCATCA +CACCTCAGGCTTAATGTTAAGCGGATTTGCCTACTTAACACCCTAAGTGCTTAGACGCAC +ATCCAATA +>NODE_502636_length_103_cov_10.825243 +CGCCGTACTCGTTCCAGCTAGGCTTTAACAAGATTTCGACTACAGGAGTTTCACCTTCTT +CGCTCGATTTTCCCAAATCGTTCGTCTATCTAATTATCGCCACGTCGCTGACTTAGGTTC +CTC +>NODE_521170_length_121_cov_2.090909 +AGACCAGGACGTTGATAGGTCAGGTGTGGAAGCGCAGTAATGCGTTAAGCTAACTGATAC +TAATTGCTCGTGCGGCTTGACCCTATAACTTTGATGAAAATCATCAGAGTCAAATGTCAT +CTGACTGAAAAGTCATGTTAT +>NODE_555671_length_91_cov_2.153846 +CCGGCTGTCCATCGGCTACGCCTCTGGGGCCTCGCCTTAGGGTCCGCCTCACCCTGCGCT +GATTGCCATGGCGCAGGAATCCTTGGGCTTACGGTGTGCGGGGTTTTCACC +>NODE_614342_length_82_cov_3.329268 +GTATTCCATAGCGAGCACGAAGATCATTGTCAATCCAAGCCCTCGGCCGATTAGTACCGG +TCGGCTACACACGTTGCCGTGCTTCCACCTCCGGCCTATCAA +>NODE_652709_length_84_cov_2.178571 +TACCTGGTCGATAGGCGGCAGGTGCAAGCGCGGCGACGCGCTCAGCCGAGCCGTACTAAT +AGCCCGAGCTCTTACCCGCTGATCCACGACGGGGCGCCGTATCA +>NODE_728221_length_81_cov_3.000000 +TCTACCTGGGCCCTTACCGGAAGGAGAACTGATCTCGGGAACGGCTTCCCGCTTAGATGC +CTTCAGCGGTTATCCGTGCCGTCCATAGCTACGCTGCGATT +>NODE_849677_length_87_cov_2.793103 +GCAAGGTTAACCGAATAGGGAAGCCGTAGAGAAATCGAGTCCGAATAGGGCGTTCAGTCG +CTGGGTGTAGACCCGAAACCAAGTGATCTATCCATGGCCAGGATGAA +>NODE_908296_length_82_cov_4.036585 +TACCCTTGGTCAGGATGAAGTTCCGGTAACACGGGATGGAGGTCCGAACTAGTAAACGTT +GAAAAGTTTTTGGATGAACTGAGGGTAGGGGTGAAAGGCTAA +>NODE_967530_length_91_cov_1.934066 +AAGGGAAACAGCCCAGACCGTCAACTAAGGTCCCTAAATCTACGCTAAGTGTTAAAGGAT +GTGAAGATGCATAAACAACTAGGATGTTGGCCCAGAAGCCGCCATCATTTA
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis/ERP000673_SL_FASTA_5SrRNA.fasta Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,17 @@ +>NODE_43453_length_87_cov_7.436781 +GTGTTGGTTTGTGGGGTGCCTGGCTTGATAAAGTTACGGTGGTCTTAGCGTGAGGGAAAC +GCCCGGTCCCATTCCGAACCCGGAAGCTAAGCCTTTCAGCGCCGATG +>NODE_99439_length_86_cov_5.883721 +CTCAGCGCCGATGGTACTTGGTTGGACACGACCTGGGAGAGTAGGACGCCGCCGGACACT +CATTCCCAGCAGGGGGTGTGGTGTCACAGTCTGTTCGACCCGGTTG +>NODE_135867_length_90_cov_2.677778 +CCGTGAAAGGGCGGTGTCTTGACCGCTTGACCAATGAGCCATATTTATATGAACCTAGCT +ACGTCCTACTCTCCCAGGCAGCTTCCCACCAAGTACCATCGGCGCTAAAG +>NODE_142137_length_108_cov_4.314815 +CCGTTCCCATTCCGAACACGACGGTTAAGACCTAAGCGGCCGATGGTACTGCACTGGAGA +CGGTGTGGGAGAGCAGGTGGACGCCAGATCAAATGGGGATGTAGCTCAGTTGGGAGAGCA +CCTGCCTT +>NODE_1151881_length_116_cov_1.396552 +CCCCGGCAGCGACCTACTCTCCCGTGCCTTAAGACAAAGTACCATTGGCGCAAAAGGGTT +TAACAGCCGAGTTCGGAATGGGATCGGGTGCAGCCGCTCCGCCATAACCACCAGGTCGGC +AAAACGCACGTTGTTT
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis/ERP000673_SL_FASTA_newick.tre Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,1 @@ +((((5:0.14227,(20:0.106,15:0.18576)0.911:0.10553)0.007:0.10416,((18:0.08923,23:0.10232)0.006:0.05316,((10:0.11847,16:0.14938)0.787:0.05258,(21:0.23433,((11:0.17866,(19:0.13581,(14:0.06355,17:0.11713)0.975:0.14125)0.182:0.01658)0.924:0.10205,24:0.08031)0.744:0.02853)0.807:0.06117)0.007:0.13755)0.007:3.00121)0.341:0.00018,0:5.99092)0.000:0.00019,7:0.14713,(3:0.16625,(((8:0.11556,(1:0.1783,13:0.20524)0.871:0.11572)0.784:0.08462,(25:0.17073,12:0.1115)0.743:0.06789)0.004:0.01963,(22:0.21513,(9:0.13668,4:0.16195)0.006:0.06634)0.067:5.14997)0.000:0.0002)0.497:0.00011); \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis/ERP000673_SL_FASTA_otu.biom Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,1 @@ +{"rows": [{"id": "0", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Fusobacteria", "c__Fusobacteria", "o__Fusobacteriales", "f__Fusobacteriaceae"]}}, {"id": "1", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Actinobacteria", "c__Actinobacteria", "o__Actinomycetales", "f__Promicromonosporaceae"]}}, {"id": "2", "metadata": {"taxonomy": ["Root"]}}, {"id": "3", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Fusobacteria", "c__Fusobacteria", "o__Fusobacteriales", "f__Fusobacteriaceae"]}}, {"id": "4", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}}, {"id": "5", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Bacteroidetes", "c__Bacteroidia", "o__Bacteroidales", "f__S24-7"]}}, {"id": "6", "metadata": {"taxonomy": ["Root"]}}, {"id": "7", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}}, {"id": "8", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Clostridiales", "f__Lachnospiraceae"]}}, {"id": "9", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Clostridiales"]}}, {"id": "10", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Fusobacteria", "c__Fusobacteria", "o__Fusobacteriales"]}}, {"id": "11", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Firmicutes", "c__Clostridia"]}}, {"id": "12", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}}, {"id": "13", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Actinobacteria", "c__Acidimicrobiia", "o__Acidimicrobiales", "f__AKIW874"]}}, {"id": "14", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Bacteroidetes", "c__Bacteroidia", "o__Bacteroidales"]}}, {"id": "15", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Bacteroidetes", "c__Bacteroidia", "o__Bacteroidales", "f__[Paraprevotellaceae]"]}}, {"id": "16", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Clostridiales", "f__Ruminococcaceae"]}}, {"id": "17", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Bacteroidetes", "c__Bacteroidia", "o__Bacteroidales", "f__[Paraprevotellaceae]"]}}, {"id": "18", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}}, {"id": "19", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Clostridiales", "f__Clostridiaceae"]}}, {"id": "20", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Bacteroidetes", "c__Bacteroidia", "o__Bacteroidales", "f__[Paraprevotellaceae]"]}}, {"id": "21", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Bacteroidetes", "c__Bacteroidia", "o__Bacteroidales", "f__"]}}, {"id": "22", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}}, {"id": "23", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Clostridiales", "f__Peptostreptococcaceae"]}}, {"id": "24", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Actinobacteria", "c__Actinobacteria", "o__Actinomycetales", "f__Promicromonosporaceae"]}}, {"id": "25", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Fusobacteria", "c__Fusobacteria", "o__Fusobacteriales", "f__Fusobacteriaceae"]}}], "format": "Biological Observation Matrix 0.9.3", "data": [[0, 0, 1.0], [1, 0, 1.0], [2, 0, 1.0], [3, 0, 1.0], [4, 0, 1.0], [5, 0, 1.0], [6, 0, 1.0], [7, 0, 1.0], [8, 0, 1.0], [9, 0, 1.0], [10, 0, 1.0], [11, 0, 1.0], [12, 0, 1.0], [13, 0, 1.0], [14, 0, 1.0], [15, 0, 1.0], [16, 0, 1.0], [17, 0, 1.0], [18, 0, 1.0], [19, 0, 1.0], [20, 0, 1.0], [21, 0, 1.0], [22, 0, 1.0], [23, 0, 1.0], [24, 0, 1.0], [25, 0, 1.0]], "columns": [{"id": "NODE", "metadata": null}], "generated_by": "QIIME 1.5.0", "matrix_type": "sparse", "shape": [26, 1], "format_url": "http://biom-format.org", "date": "2013-07-15T16:17:15.335713", "type": "OTU table", "id": null, "matrix_element_type": "int"} \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis/ERP000673_SL_FASTA_otu.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,26 @@ +15 NODE_263966_length_105_cov_6.971428 Root;k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__[Paraprevotellaceae] 0.990 +10 NODE_506792_length_138_cov_5.282609 Root;k__Bacteria;p__Fusobacteria;c__Fusobacteria;o__Fusobacteriales 0.900 +3 NODE_36498_length_88_cov_5.659091 Root;k__Bacteria;p__Fusobacteria;c__Fusobacteria;o__Fusobacteriales;f__Fusobacteriaceae 0.980 +11 NODE_153115_length_97_cov_4.041237 Root;k__Bacteria;p__Firmicutes;c__Clostridia 0.880 +2 NODE_86541_length_396_cov_14.143939 Root 1.000 +0 NODE_93022_length_88_cov_6.454545 Root;k__Bacteria;p__Fusobacteria;c__Fusobacteria;o__Fusobacteriales;f__Fusobacteriaceae 0.970 +21 NODE_962963_length_105_cov_4.171429 Root;k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__ 0.970 +8 NODE_37374_length_100_cov_5.590000 Root;k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae 0.950 +25 NODE_36820_length_93_cov_5.978495 Root;k__Bacteria;p__Fusobacteria;c__Fusobacteria;o__Fusobacteriales;f__Fusobacteriaceae 1.000 +22 NODE_139095_length_87_cov_6.597701 Root;k__Bacteria 1.000 +23 NODE_214054_length_88_cov_3.659091 Root;k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Peptostreptococcaceae 0.870 +20 NODE_584_length_121_cov_13.239670 Root;k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__[Paraprevotellaceae] 0.980 +7 NODE_39691_length_82_cov_9.073171 Root;k__Bacteria 0.990 +9 NODE_54149_length_83_cov_6.915663 Root;k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales 0.820 +18 NODE_163044_length_88_cov_2.090909 Root;k__Bacteria 1.000 +1 NODE_345204_length_99_cov_9.080808 Root;k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Actinomycetales;f__Promicromonosporaceae 1.000 +16 NODE_13225_length_100_cov_6.370000 Root;k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae 0.930 +19 NODE_58207_length_124_cov_4.540323 Root;k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae 0.980 +13 NODE_355328_length_81_cov_2.580247 Root;k__Bacteria;p__Actinobacteria;c__Acidimicrobiia;o__Acidimicrobiales;f__AKIW874 0.910 +5 NODE_150659_length_94_cov_2.893617 Root;k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__S24-7 0.970 +17 NODE_36873_length_156_cov_11.096154 Root;k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__[Paraprevotellaceae] 0.860 +24 NODE_363653_length_121_cov_7.801653 Root;k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Actinomycetales;f__Promicromonosporaceae 0.920 +6 NODE_25366_length_146_cov_20.068493 Root 1.000 +14 NODE_2574_length_96_cov_3.916667 Root;k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales 0.860 +12 NODE_185122_length_110_cov_5.163636 Root;k__Bacteria 0.890 +4 NODE_433069_length_82_cov_7.292683 Root;k__Bacteria 1.000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis/MGYS00000356_metadata.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,17 @@ +analysis_id name group_type description download_url pipeline_version experiment_type +MGYA00002187 ERP000673_SL_FASTA_16SrRNA.fasta Taxonomic analysis Contigs encoding 16S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00002187/file/ERP000673_SL_FASTA_16SrRNA.fasta 1.0 assembly +MGYA00002187 ERP000673_SL_FASTA_23SrRNA.fasta Taxonomic analysis Contigs encoding 23S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00002187/file/ERP000673_SL_FASTA_23SrRNA.fasta 1.0 assembly +MGYA00002187 ERP000673_SL_FASTA_5SrRNA.fasta Taxonomic analysis Contigs encoding 5S rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00002187/file/ERP000673_SL_FASTA_5SrRNA.fasta 1.0 assembly +MGYA00002187 ERP000673_SL_FASTA_CDS.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00002187/file/ERP000673_SL_FASTA_CDS.faa.gz 1.0 assembly +MGYA00002187 ERP000673_SL_FASTA_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00002187/file/ERP000673_SL_FASTA_CDS_unannotated.faa.gz 1.0 assembly +MGYA00002187 ERP000673_SL_FASTA_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00002187/file/ERP000673_SL_FASTA_GO.csv 1.0 assembly +MGYA00002187 ERP000673_SL_FASTA_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00002187/file/ERP000673_SL_FASTA_GO_slim.csv 1.0 assembly +MGYA00002187 ERP000673_SL_FASTA_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00002187/file/ERP000673_SL_FASTA_InterPro.tsv.gz 1.0 assembly +MGYA00002187 ERP000673_SL_FASTA_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00002187/file/ERP000673_SL_FASTA_ORF_unannotated.ffn.gz 1.0 assembly +MGYA00002187 ERP000673_SL_FASTA_interproscan.fasta.gz Sequence data Processed contigs with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00002187/file/ERP000673_SL_FASTA_interproscan.fasta.gz 1.0 assembly +MGYA00002187 ERP000673_SL_FASTA_newick.tre Taxonomic analysis Phylogenetic tree https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00002187/file/ERP000673_SL_FASTA_newick.tre 1.0 assembly +MGYA00002187 ERP000673_SL_FASTA_noFunction.fasta.gz Sequence data Processed contigs without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00002187/file/ERP000673_SL_FASTA_noFunction.fasta.gz 1.0 assembly +MGYA00002187 ERP000673_SL_FASTA_nt_reads.fasta.gz Sequence data Processed contigs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00002187/file/ERP000673_SL_FASTA_nt_reads.fasta.gz 1.0 assembly +MGYA00002187 ERP000673_SL_FASTA_otu.biom Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00002187/file/ERP000673_SL_FASTA_otu.biom 1.0 assembly +MGYA00002187 ERP000673_SL_FASTA_otu.tsv Taxonomic analysis OTUs, counts and taxonomic assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00002187/file/ERP000673_SL_FASTA_otu.tsv 1.0 assembly +MGYA00002187 ERP000673_SL_FASTA_readsWithpCDS.fasta.gz Sequence data Processed contigs with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00002187/file/ERP000673_SL_FASTA_readsWithpCDS.fasta.gz 1.0 assembly
Binary file test-data/taxonomic_analysis_itsonedb/ERR169331_FASTQ_ITS_ITSoneDB_MAPSeq.mseq.gz has changed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_itsonedb/ERR169331_FASTQ_ITS_ITSoneDB_OTU.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,23 @@ +# Constructed from biom file +# OTU ID ITSonedb taxonomy taxid +73795 1374.0 sk__Eukaryota 2759 +42775 1.0 sk__Eukaryota;k__;p__;c__Dictyochophyceae;o__Dictyochales 35685 +75825 1.0 sk__Eukaryota;k__;p__Bacillariophyta 2836 +75094 10.0 sk__Eukaryota;k__;p__Bacillariophyta;c__Bacillariophyceae;o__Bacillariales 33851 +152897 144.0 sk__Eukaryota;k__;p__Ciliophora 5878 +15836 17.0 sk__Eukaryota;k__;p__Ciliophora;c__Litostomatea;o__Haptorida 5989 +6522 13713.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida 200604 +104168 2091.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__;g__;s__uncultured_Tintinnida 1572338 +27758 22.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Codonellidae 180938 +24638 1.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Codonellopsidae 211020 +110797 9.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Codonellopsidae;g__Laackmanniella 1229647 +170497 7.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Ptychocylididae;g__Cymatocylis;s__Cymatocylis_calyciformis 1229645 +83026 52.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae 182088 +50749 11.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Amphorides 1049792 +71379 182.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Amphorides;s__Amphorides_quadrilineata 1176301 +39478 1.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Eutintinnus 182089 +173477 162.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Eutintinnus;s__Eutintinnus_fraknoi 513292 +40851 1.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Xystonellidae 211023 +36390 2.0 sk__Eukaryota;k__;p__Haptista;c__Haptophyta;o__Prymnesiales 73028 +18861 281.0 sk__Eukaryota;k__Fungi 4751 +37430 136.0 sk__Eukaryota;k__Viridiplantae 33090
Binary file test-data/taxonomic_analysis_itsonedb/ERR169331_FASTQ_ITS_ITSoneDB_OTU_TABLE_HDF5.biom has changed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_itsonedb/ERR169331_FASTQ_ITS_ITSoneDB_OTU_TABLE_JSON.biom Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,1 @@ +{"id": "None","format": "Biological Observation Matrix 1.0.0","format_url": "http://biom-format.org","matrix_type": "sparse","generated_by": "BIOM-Format 2.1.6","date": "2020-11-04T16:06:10.999132","type": "OTU table","matrix_element_type": "float","shape": [21, 1],"data": [[0,0,1374.0],[1,0,1.0],[2,0,1.0],[3,0,10.0],[4,0,144.0],[5,0,17.0],[6,0,13713.0],[7,0,2091.0],[8,0,22.0],[9,0,1.0],[10,0,9.0],[11,0,7.0],[12,0,52.0],[13,0,11.0],[14,0,182.0],[15,0,1.0],[16,0,162.0],[17,0,1.0],[18,0,2.0],[19,0,281.0],[20,0,136.0]],"rows": [{"id": "73795", "metadata": {"taxonomy": "sk__Eukaryota"}},{"id": "42775", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__;c__Dictyochophyceae;o__Dictyochales"}},{"id": "75825", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Bacillariophyta"}},{"id": "75094", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Bacillariophyta;c__Bacillariophyceae;o__Bacillariales"}},{"id": "152897", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora"}},{"id": "15836", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Litostomatea;o__Haptorida"}},{"id": "6522", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida"}},{"id": "104168", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__;g__;s__uncultured_Tintinnida"}},{"id": "27758", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Codonellidae"}},{"id": "24638", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Codonellopsidae"}},{"id": "110797", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Codonellopsidae;g__Laackmanniella"}},{"id": "170497", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Ptychocylididae;g__Cymatocylis;s__Cymatocylis_calyciformis"}},{"id": "83026", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae"}},{"id": "50749", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Amphorides"}},{"id": "71379", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Amphorides;s__Amphorides_quadrilineata"}},{"id": "39478", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Eutintinnus"}},{"id": "173477", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Eutintinnus;s__Eutintinnus_fraknoi"}},{"id": "40851", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Xystonellidae"}},{"id": "36390", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Haptista;c__Haptophyta;o__Prymnesiales"}},{"id": "18861", "metadata": {"taxonomy": "sk__Eukaryota;k__Fungi"}},{"id": "37430", "metadata": {"taxonomy": "sk__Eukaryota;k__Viridiplantae"}}],"columns": [{"id": "ITSonedb", "metadata": null}]} \ No newline at end of file
Binary file test-data/taxonomic_analysis_itsonedb/ERR169333_FASTQ_ITS_ITSoneDB_MAPSeq.mseq.gz has changed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_itsonedb/ERR169333_FASTQ_ITS_ITSoneDB_OTU.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,21 @@ +# Constructed from biom file +# OTU ID ITSonedb taxonomy taxid +73795 439.0 sk__Eukaryota 2759 +75094 3.0 sk__Eukaryota;k__;p__Bacillariophyta;c__Bacillariophyceae;o__Bacillariales 33851 +152897 95.0 sk__Eukaryota;k__;p__Ciliophora 5878 +15836 1.0 sk__Eukaryota;k__;p__Ciliophora;c__Litostomatea;o__Haptorida 5989 +6522 14537.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida 200604 +104168 348.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__;g__;s__uncultured_Tintinnida 1572338 +27758 14.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Codonellidae 180938 +117922 2.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Codonellidae;g__Tintinnopsis;s__Tintinnopsis_lacustris 1176376 +121225 1.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Ptychocylididae 1050073 +172853 1.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Ptychocylididae;g__Cymatocylis 1229642 +128805 1.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Rhabdonellidae;g__Rhabdonella 211027 +83026 31.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae 182088 +121393 1.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Amphorellopsis 513203 +148739 2.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Amphorellopsis;s__Amphorellopsis_quinquealata 1229649 +94969 6.0 sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Salpingella;s__Salpingella_sp. 1969917 +71734 1.0 sk__Eukaryota;k__;p__Haptista 2608109 +18861 70.0 sk__Eukaryota;k__Fungi 4751 +169982 1.0 sk__Eukaryota;k__Fungi;p__Ascomycota 4890 +37430 105.0 sk__Eukaryota;k__Viridiplantae 33090
Binary file test-data/taxonomic_analysis_itsonedb/ERR169333_FASTQ_ITS_ITSoneDB_OTU_TABLE_HDF5.biom has changed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_itsonedb/ERR169333_FASTQ_ITS_ITSoneDB_OTU_TABLE_JSON.biom Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,1 @@ +{"id": "None","format": "Biological Observation Matrix 1.0.0","format_url": "http://biom-format.org","matrix_type": "sparse","generated_by": "BIOM-Format 2.1.6","date": "2020-05-18T08:55:27.015808","type": "OTU table","matrix_element_type": "float","shape": [19, 1],"data": [[0,0,439.0],[1,0,3.0],[2,0,95.0],[3,0,1.0],[4,0,14537.0],[5,0,348.0],[6,0,14.0],[7,0,2.0],[8,0,1.0],[9,0,1.0],[10,0,1.0],[11,0,31.0],[12,0,1.0],[13,0,2.0],[14,0,6.0],[15,0,1.0],[16,0,70.0],[17,0,1.0],[18,0,105.0]],"rows": [{"id": "73795", "metadata": {"taxonomy": "sk__Eukaryota"}},{"id": "75094", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Bacillariophyta;c__Bacillariophyceae;o__Bacillariales"}},{"id": "152897", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora"}},{"id": "15836", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Litostomatea;o__Haptorida"}},{"id": "6522", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida"}},{"id": "104168", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__;g__;s__uncultured_Tintinnida"}},{"id": "27758", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Codonellidae"}},{"id": "117922", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Codonellidae;g__Tintinnopsis;s__Tintinnopsis_lacustris"}},{"id": "121225", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Ptychocylididae"}},{"id": "172853", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Ptychocylididae;g__Cymatocylis"}},{"id": "128805", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Rhabdonellidae;g__Rhabdonella"}},{"id": "83026", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae"}},{"id": "121393", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Amphorellopsis"}},{"id": "148739", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Amphorellopsis;s__Amphorellopsis_quinquealata"}},{"id": "94969", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Salpingella;s__Salpingella_sp."}},{"id": "71734", "metadata": {"taxonomy": "sk__Eukaryota;k__;p__Haptista"}},{"id": "18861", "metadata": {"taxonomy": "sk__Eukaryota;k__Fungi"}},{"id": "169982", "metadata": {"taxonomy": "sk__Eukaryota;k__Fungi;p__Ascomycota"}},{"id": "37430", "metadata": {"taxonomy": "sk__Eukaryota;k__Viridiplantae"}}],"columns": [{"id": "ITSonedb", "metadata": null}]} \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_itsonedb/MGYS00002478_metadata.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,36 @@ +analysis_id name group_type description download_url pipeline_version experiment_type +MGYA00524152 ERR169333_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ.fasta.gz 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_5.8S.fasta.gz non-coding RNAs Reads encoding 5.8S https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_5.8S.fasta.gz 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_ITS_ITSoneDB_MAPSeq.mseq.gz Taxonomic analysis ITSoneDB MAPseq ITSoneDB assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_ITSoneDB_MAPSeq.mseq.gz 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_ITS_ITSoneDB_OTU.tsv Taxonomic analysis ITSoneDB OTUs, counts and taxonomic assignments for ITSOneDB https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_ITSoneDB_OTU.tsv 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_ITS_ITSoneDB_OTU_TABLE_HDF5.biom Taxonomic analysis ITSoneDB OTUs, counts and taxonomic assignments for ITSOneDB https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_ITSoneDB_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_ITS_ITSoneDB_OTU_TABLE_JSON.biom Taxonomic analysis ITSoneDB OTUs, counts and taxonomic assignments for ITSOneDB https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_ITSoneDB_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_ITS_UNITE_MAPSeq.mseq.gz Taxonomic analysis UNITE MAPseq UNITE assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_UNITE_MAPSeq.mseq.gz 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_ITS_UNITE_OTU.tsv Taxonomic analysis UNITE OTUs, counts and taxonomic assignments for UNITE https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_UNITE_OTU.tsv 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_ITS_UNITE_OTU_TABLE_HDF5.biom Taxonomic analysis UNITE OTUs, counts and taxonomic assignments for UNITE https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_UNITE_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_ITS_UNITE_OTU_TABLE_JSON.biom Taxonomic analysis UNITE OTUs, counts and taxonomic assignments for UNITE https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_UNITE_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_ITS_masked.fasta.gz Taxonomic analysis ITS Reads encoding ITS (with SSU and LSU sequences masked) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_masked.fasta.gz 5.0 amplicon +MGYA00575367 ERR169332_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ.fasta.gz 5.0 amplicon +MGYA00575367 ERR169332_FASTQ_5.8S.fasta.gz non-coding RNAs Reads encoding 5.8S https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ_5.8S.fasta.gz 5.0 amplicon +MGYA00575367 ERR169332_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ_SSU.fasta.gz 5.0 amplicon +MGYA00575367 ERR169332_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ_SSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00575367 ERR169332_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ_SSU_OTU.tsv 5.0 amplicon +MGYA00575367 ERR169332_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00575367 ERR169332_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00575368 ERR169331_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ.fasta.gz 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_5.8S.fasta.gz non-coding RNAs Reads encoding 5.8S https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_5.8S.fasta.gz 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_ITS_ITSoneDB_MAPSeq.mseq.gz Taxonomic analysis ITSoneDB MAPseq ITSoneDB assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_ITSoneDB_MAPSeq.mseq.gz 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_ITS_ITSoneDB_OTU.tsv Taxonomic analysis ITSoneDB OTUs, counts and taxonomic assignments for ITSOneDB https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_ITSoneDB_OTU.tsv 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_ITS_ITSoneDB_OTU_TABLE_HDF5.biom Taxonomic analysis ITSoneDB OTUs, counts and taxonomic assignments for ITSOneDB https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_ITSoneDB_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_ITS_ITSoneDB_OTU_TABLE_JSON.biom Taxonomic analysis ITSoneDB OTUs, counts and taxonomic assignments for ITSOneDB https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_ITSoneDB_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_ITS_UNITE_MAPSeq.mseq.gz Taxonomic analysis UNITE MAPseq UNITE assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_UNITE_MAPSeq.mseq.gz 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_ITS_UNITE_OTU.tsv Taxonomic analysis UNITE OTUs, counts and taxonomic assignments for UNITE https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_UNITE_OTU.tsv 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_ITS_UNITE_OTU_TABLE_HDF5.biom Taxonomic analysis UNITE OTUs, counts and taxonomic assignments for UNITE https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_UNITE_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_ITS_UNITE_OTU_TABLE_JSON.biom Taxonomic analysis UNITE OTUs, counts and taxonomic assignments for UNITE https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_UNITE_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_ITS_masked.fasta.gz Taxonomic analysis ITS Reads encoding ITS (with SSU and LSU sequences masked) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_masked.fasta.gz 5.0 amplicon +MGYA00575369 ERR169330_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575369/file/ERR169330_FASTQ.fasta.gz 5.0 amplicon +MGYA00575369 ERR169330_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575369/file/ERR169330_FASTQ_SSU.fasta.gz 5.0 amplicon +MGYA00575369 ERR169330_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575369/file/ERR169330_FASTQ_SSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00575369 ERR169330_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575369/file/ERR169330_FASTQ_SSU_OTU.tsv 5.0 amplicon +MGYA00575369 ERR169330_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575369/file/ERR169330_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00575369 ERR169330_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575369/file/ERR169330_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 amplicon
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_lsu_rrna/MGYS00002316_metadata.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,36 @@ +analysis_id name group_type description download_url pipeline_version experiment_type +MGYA00153745 OFEK01.Archaea_SRP.RF01857.fa non-coding RNAs Predicted Archaea SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.Archaea_SRP.RF01857.fa 4.1 assembly +MGYA00153745 OFEK01.Bacteria_large_SRP.RF01854.fa non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.Bacteria_large_SRP.RF01854.fa 4.1 assembly +MGYA00153745 OFEK01.Bacteria_small_SRP.RF00169.fa non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.Bacteria_small_SRP.RF00169.fa 4.1 assembly +MGYA00153745 OFEK01.LSU_rRNA_archaea.RF02540.fa non-coding RNAs Predicted Archaeal LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.LSU_rRNA_archaea.RF02540.fa 4.1 assembly +MGYA00153745 OFEK01.beta_tmRNA.RF01850.fa non-coding RNAs Predicted beta tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.beta_tmRNA.RF01850.fa 4.1 assembly +MGYA00153745 OFEK01_FASTA.fasta.gz Sequence data Processed contigs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA.fasta.gz 4.1 assembly +MGYA00153745 OFEK01_FASTA_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_CDS_annotated.faa.gz 4.1 assembly +MGYA00153745 OFEK01_FASTA_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_CDS_unannotated.faa.gz 4.1 assembly +MGYA00153745 OFEK01_FASTA_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_GO.csv 4.1 assembly +MGYA00153745 OFEK01_FASTA_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_GO_slim.csv 4.1 assembly +MGYA00153745 OFEK01_FASTA_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_InterPro.tsv.gz 4.1 assembly +MGYA00153745 OFEK01_FASTA_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_LSU.fasta.gz 4.1 assembly +MGYA00153745 OFEK01_FASTA_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_LSU_MAPSeq.mseq.gz 4.1 assembly +MGYA00153745 OFEK01_FASTA_LSU_OTU.tsv Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_LSU_OTU.tsv 4.1 assembly +MGYA00153745 OFEK01_FASTA_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_LSU_OTU_TABLE_HDF5.biom 4.1 assembly +MGYA00153745 OFEK01_FASTA_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_LSU_OTU_TABLE_JSON.biom 4.1 assembly +MGYA00153745 OFEK01_FASTA_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_ORF_unannotated.ffn.gz 4.1 assembly +MGYA00153745 OFEK01_FASTA_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_SSU.fasta.gz 4.1 assembly +MGYA00153745 OFEK01_FASTA_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_SSU_MAPSeq.mseq.gz 4.1 assembly +MGYA00153745 OFEK01_FASTA_SSU_OTU.tsv Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_SSU_OTU.tsv 4.1 assembly +MGYA00153745 OFEK01_FASTA_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_SSU_OTU_TABLE_HDF5.biom 4.1 assembly +MGYA00153745 OFEK01_FASTA_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_SSU_OTU_TABLE_JSON.biom 4.1 assembly +MGYA00153745 OFEK01_FASTA_interproscan.fasta.gz Sequence data Processed contigs with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_interproscan.fasta.gz 4.1 assembly +MGYA00153745 OFEK01_FASTA_noFunction.fasta.gz Sequence data Processed contigs without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_noFunction.fasta.gz 4.1 assembly +MGYA00153745 OFEK01_FASTA_readsWithpCDS.fasta.gz Sequence data Processed contigs with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_readsWithpCDS.fasta.gz 4.1 assembly +MGYA00153745 OFEK01.LSU_rRNA_bacteria.RF02541.fa non-coding RNAs Predicted Bacterial LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.LSU_rRNA_bacteria.RF02541.fa 4.1 assembly +MGYA00153745 OFEK01.RNaseP_arch.RF00373.fa non-coding RNAs Predicted Archaeal RNase P RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.RNaseP_arch.RF00373.fa 4.1 assembly +MGYA00153745 OFEK01.RNaseP_bact_a.RF00010.fa non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.RNaseP_bact_a.RF00010.fa 4.1 assembly +MGYA00153745 OFEK01.RNaseP_bact_b.RF00011.fa non-coding RNAs Predicted Bacterial RNase P class B RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.RNaseP_bact_b.RF00011.fa 4.1 assembly +MGYA00153745 OFEK01.SSU_rRNA_archaea.RF01959.fa non-coding RNAs Predicted Archaeal SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.SSU_rRNA_archaea.RF01959.fa 4.1 assembly +MGYA00153745 OFEK01.SSU_rRNA_bacteria.RF00177.fa non-coding RNAs Predicted Bacterial SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.SSU_rRNA_bacteria.RF00177.fa 4.1 assembly +MGYA00153745 OFEK01.SSU_rRNA_eukarya.RF01960.fa non-coding RNAs Predicted Eukaryotic SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.SSU_rRNA_eukarya.RF01960.fa 4.1 assembly +MGYA00153745 OFEK01.tRNA-Sec.RF01852.fa non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.tRNA-Sec.RF01852.fa 4.1 assembly +MGYA00153745 OFEK01.tRNA.RF00005.fa non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.tRNA.RF00005.fa 4.1 assembly +MGYA00153745 OFEK01.tmRNA.RF00023.fa non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.tmRNA.RF00023.fa 4.1 assembly
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_lsu_rrna/OFEK01_FASTA_LSU_OTU.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,87 @@ +# Constructed from biom file +# OTU ID OFEK01 taxonomy +10975 3.0 sk__Archaea +8795 1.0 sk__Archaea;k__;p__Candidatus_Verstraetearchaeota;c__Candidatus_Methanomethylia;o__Candidatus_Methanomethyliales;f__Candidatus_Methanomethyliaceae +2598 1.0 sk__Archaea;k__;p__Euryarchaeota;c__Methanobacteria;o__Methanobacteriales +24796 1.0 sk__Archaea;k__;p__Euryarchaeota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae +1234 1.0 sk__Archaea;k__;p__Euryarchaeota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobacterium +18081 2.0 sk__Archaea;k__;p__Euryarchaeota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobacterium;s__Methanobacterium_kanagiense +32666 2.0 sk__Archaea;k__;p__Euryarchaeota;c__Methanomicrobia;o__;f__;g__;s__Arc_I_group_archaeon_BMIXfssc0709_Meth_Bin006 +9532 1.0 sk__Archaea;k__;p__Euryarchaeota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanomicrobiaceae;g__Methanoculleus +15469 1.0 sk__Archaea;k__;p__Euryarchaeota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanomicrobiaceae;g__Methanoculleus;s__Methanoculleus_chikugoensis +27689 1.0 sk__Archaea;k__;p__Euryarchaeota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanomicrobiaceae;g__Methanoculleus;s__Methanoculleus_horonobensis +29526 2.0 sk__Archaea;k__;p__Euryarchaeota;c__Methanomicrobia;o__Methanosarcinales;f__;g__;s__Methanosarcinales_archaeon_Methan_04 +31560 2.0 sk__Archaea;k__;p__Euryarchaeota;c__Methanomicrobia;o__Methanosarcinales;f__Methanosaetaceae;g__Methanothrix +37072 1.0 sk__Archaea;k__;p__Euryarchaeota;c__Thermoplasmata;o__Methanomassiliicoccales +11331 1.0 sk__Archaea;k__;p__Euryarchaeota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomassiliicoccaceae +4942 37.0 sk__Bacteria +22213 3.0 sk__Bacteria;k__;p__Acidobacteria +31640 2.0 sk__Bacteria;k__;p__Actinobacteria +5898 4.0 sk__Bacteria;k__;p__Bacteroidetes +27103 1.0 sk__Bacteria;k__;p__Bacteroidetes;c__;o__;f__;g__;s__Bacteroidetes_bacterium_41-46 +30805 3.0 sk__Bacteria;k__;p__Bacteroidetes;c__;o__;f__;g__;s__Bacteroidetes_bacterium_ADurb.BinA012 +21332 1.0 sk__Bacteria;k__;p__Bacteroidetes;c__;o__;f__;g__;s__Bacteroidetes_bacterium_RIFOXYC2_FULL_39_11 +427 3.0 sk__Bacteria;k__;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales +17830 1.0 sk__Bacteria;k__;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__;g__;s__Bacteroidales_bacterium_6E +19208 1.0 sk__Bacteria;k__;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__;g__;s__Bacteroidales_bacterium_Bact_08 +32229 1.0 sk__Bacteria;k__;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__;g__;s__Bacteroidales_bacterium_Bact_24 +32700 2.0 sk__Bacteria;k__;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Lentimicrobiaceae;g__Lentimicrobium +19833 1.0 sk__Bacteria;k__;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Lentimicrobiaceae;g__Lentimicrobium;s__Lentimicrobium_saccharophilum +32337 2.0 sk__Bacteria;k__;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Petrimonas +41460 2.0 sk__Bacteria;k__;p__Bacteroidetes;c__Flavobacteriia;o__Flavobacteriales +29837 1.0 sk__Bacteria;k__;p__Candidatus_Aminicenantes +31910 3.0 sk__Bacteria;k__;p__Candidatus_Cloacimonetes +167 2.0 sk__Bacteria;k__;p__Candidatus_Wildermuthbacteria +16678 2.0 sk__Bacteria;k__;p__Chloroflexi +29561 3.0 sk__Bacteria;k__;p__Chloroflexi;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae +1764 3.0 sk__Bacteria;k__;p__Elusimicrobia +17923 1.0 sk__Bacteria;k__;p__Elusimicrobia;c__Endomicrobia;o__Endomicrobiales +33208 1.0 sk__Bacteria;k__;p__Firmicutes;c__Bacilli;o__Bacillales +26970 1.0 sk__Bacteria;k__;p__Firmicutes;c__Clostridia +29372 10.0 sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Clostridiales +38353 1.0 sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Clostridiales;f__;g__Intestinimonas +34136 1.0 sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Clostridiales;f__;g__Pseudoflavonifractor +33390 1.0 sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae +34866 1.0 sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiales_Family_XIII._Incertae_Sedis +27380 2.0 sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Gracilibacteraceae +39668 1.0 sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Gracilibacteraceae;g__Gracilibacter;s__Gracilibacter_sp._BRH_c7a +15440 1.0 sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Peptococcaceae +28330 1.0 sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Peptococcaceae;g__Candidatus_Dichloromethanomonas +28145 2.0 sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae +7343 2.0 sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae;g__Ruminiclostridium +23154 1.0 sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Syntrophomonadaceae +2364 3.0 sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Thermoanaerobacterales +31655 1.0 sk__Bacteria;k__;p__Ignavibacteriae;c__Ignavibacteria +18405 3.0 sk__Bacteria;k__;p__Ignavibacteriae;c__Ignavibacteria;o__Ignavibacteriales +36841 3.0 sk__Bacteria;k__;p__Ignavibacteriae;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae +3523 1.0 sk__Bacteria;k__;p__Ignavibacteriae;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__Ignavibacterium +1934 1.0 sk__Bacteria;k__;p__Kiritimatiellaeota;c__Kiritimatiellae +9335 2.0 sk__Bacteria;k__;p__Lentisphaerae;c__Lentisphaeria;o__Lentisphaerales;f__;g__;s__Lentisphaerales_bacterium_Lenti_01 +25388 3.0 sk__Bacteria;k__;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__;g__Thiomonas +28914 1.0 sk__Bacteria;k__;p__Proteobacteria;c__Betaproteobacteria;o__Nitrosomonadales +20029 3.0 sk__Bacteria;k__;p__Proteobacteria;c__Betaproteobacteria;o__Nitrosomonadales;f__Thiobacillaceae;g__Thiobacillus +21013 1.0 sk__Bacteria;k__;p__Proteobacteria;c__Betaproteobacteria;o__Nitrosomonadales;f__Thiobacillaceae;g__Thiobacillus;s__Thiobacillus_denitrificans +21997 2.0 sk__Bacteria;k__;p__Proteobacteria;c__Betaproteobacteria;o__Rhodocyclales;f__Azonexaceae +41881 1.0 sk__Bacteria;k__;p__Proteobacteria;c__Betaproteobacteria;o__Rhodocyclales;f__Azonexaceae;g__Azonexus;s__Azonexus_hydrophilus +2686 1.0 sk__Bacteria;k__;p__Proteobacteria;c__Betaproteobacteria;o__Rhodocyclales;f__Azonexaceae;g__Dechloromonas +19222 1.0 sk__Bacteria;k__;p__Proteobacteria;c__Deltaproteobacteria;o__Desulfuromonadales +12048 1.0 sk__Bacteria;k__;p__Proteobacteria;c__Deltaproteobacteria;o__Desulfuromonadales;f__Geobacteraceae +40711 3.0 sk__Bacteria;k__;p__Proteobacteria;c__Deltaproteobacteria;o__Desulfuromonadales;f__Geobacteraceae;g__Geobacter +10852 1.0 sk__Bacteria;k__;p__Proteobacteria;c__Deltaproteobacteria;o__Desulfuromonadales;f__Geobacteraceae;g__Geobacter;s__Geobacter_lovleyi +3804 2.0 sk__Bacteria;k__;p__Proteobacteria;c__Deltaproteobacteria;o__Syntrophobacterales;f__Syntrophaceae +10058 3.0 sk__Bacteria;k__;p__Proteobacteria;c__Deltaproteobacteria;o__Syntrophobacterales;f__Syntrophaceae;g__Smithella +7700 2.0 sk__Bacteria;k__;p__Proteobacteria;c__Deltaproteobacteria;o__Syntrophobacterales;f__Syntrophobacteraceae;g__Syntrophobacter;s__Syntrophobacter_fumaroxidans +7961 1.0 sk__Bacteria;k__;p__Proteobacteria;c__Epsilonproteobacteria;o__Campylobacterales +19858 1.0 sk__Bacteria;k__;p__Proteobacteria;c__Epsilonproteobacteria;o__Campylobacterales;f__Helicobacteraceae +34830 2.0 sk__Bacteria;k__;p__Proteobacteria;c__Epsilonproteobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Sulfuricurvum;s__Sulfuricurvum_kujiense +9278 1.0 sk__Bacteria;k__;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales +10097 4.0 sk__Bacteria;k__;p__Spirochaetes;c__Spirochaetia;o__Spirochaetales +1433 2.0 sk__Bacteria;k__;p__Spirochaetes;c__Spirochaetia;o__Spirochaetales;f__Spirochaetaceae +27830 1.0 sk__Bacteria;k__;p__Spirochaetes;c__Spirochaetia;o__Spirochaetales;f__Spirochaetaceae;g__Sphaerochaeta;s__Sphaerochaeta_globosa +36748 2.0 sk__Bacteria;k__;p__Synergistetes +43323 1.0 sk__Bacteria;k__;p__Synergistetes;c__;o__;f__;g__;s__Synergistetes_bacterium_ADurb.Bin155 +18694 1.0 sk__Bacteria;k__;p__Synergistetes;c__Synergistia;o__Synergistales +25465 1.0 sk__Bacteria;k__;p__Synergistetes;c__Synergistia;o__Synergistales;f__Synergistaceae +5788 2.0 sk__Bacteria;k__;p__Tenericutes;c__;o__;f__;g__;s__Tenericutes_bacterium_RIFOXYD12_FULL_36_9 +11173 1.0 sk__Bacteria;k__;p__Tenericutes;c__Mollicutes +37472 3.0 sk__Bacteria;k__;p__Thermotogae;c__Thermotogae;o__Kosmotogales;f__Kosmotogaceae;g__Mesotoga
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_lsu_rrna/OFEK01_FASTA_LSU_OTU_TABLE_JSON.biom Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,1 @@ +{"id": "None","format": "Biological Observation Matrix 1.0.0","format_url": "http://biom-format.org","matrix_type": "sparse","generated_by": "BIOM-Format 2.1.6","date": "2018-03-20T06:55:15.334776","type": "OTU table","matrix_element_type": "float","shape": [85, 1],"data": [[0,0,3.0],[1,0,1.0],[2,0,1.0],[3,0,1.0],[4,0,1.0],[5,0,2.0],[6,0,2.0],[7,0,1.0],[8,0,1.0],[9,0,1.0],[10,0,2.0],[11,0,2.0],[12,0,1.0],[13,0,1.0],[14,0,37.0],[15,0,3.0],[16,0,2.0],[17,0,4.0],[18,0,1.0],[19,0,3.0],[20,0,1.0],[21,0,3.0],[22,0,1.0],[23,0,1.0],[24,0,1.0],[25,0,2.0],[26,0,1.0],[27,0,2.0],[28,0,2.0],[29,0,1.0],[30,0,3.0],[31,0,2.0],[32,0,2.0],[33,0,3.0],[34,0,3.0],[35,0,1.0],[36,0,1.0],[37,0,1.0],[38,0,10.0],[39,0,1.0],[40,0,1.0],[41,0,1.0],[42,0,1.0],[43,0,2.0],[44,0,1.0],[45,0,1.0],[46,0,1.0],[47,0,2.0],[48,0,2.0],[49,0,1.0],[50,0,3.0],[51,0,1.0],[52,0,3.0],[53,0,3.0],[54,0,1.0],[55,0,1.0],[56,0,2.0],[57,0,3.0],[58,0,1.0],[59,0,3.0],[60,0,1.0],[61,0,2.0],[62,0,1.0],[63,0,1.0],[64,0,1.0],[65,0,1.0],[66,0,3.0],[67,0,1.0],[68,0,2.0],[69,0,3.0],[70,0,2.0],[71,0,1.0],[72,0,1.0],[73,0,2.0],[74,0,1.0],[75,0,4.0],[76,0,2.0],[77,0,1.0],[78,0,2.0],[79,0,1.0],[80,0,1.0],[81,0,1.0],[82,0,2.0],[83,0,1.0],[84,0,3.0]],"rows": [{"id": "10975", "metadata": {"taxonomy": ["sk__Archaea"]}},{"id": "8795", "metadata": {"taxonomy": ["sk__Archaea", "k__", "p__Candidatus_Verstraetearchaeota", "c__Candidatus_Methanomethylia", "o__Candidatus_Methanomethyliales", "f__Candidatus_Methanomethyliaceae"]}},{"id": "2598", "metadata": {"taxonomy": ["sk__Archaea", "k__", "p__Euryarchaeota", "c__Methanobacteria", "o__Methanobacteriales"]}},{"id": "24796", "metadata": {"taxonomy": ["sk__Archaea", "k__", "p__Euryarchaeota", "c__Methanobacteria", "o__Methanobacteriales", "f__Methanobacteriaceae"]}},{"id": "1234", "metadata": {"taxonomy": ["sk__Archaea", "k__", "p__Euryarchaeota", "c__Methanobacteria", "o__Methanobacteriales", "f__Methanobacteriaceae", "g__Methanobacterium"]}},{"id": "18081", "metadata": {"taxonomy": ["sk__Archaea", "k__", "p__Euryarchaeota", "c__Methanobacteria", "o__Methanobacteriales", "f__Methanobacteriaceae", "g__Methanobacterium", "s__Methanobacterium_kanagiense"]}},{"id": "32666", "metadata": {"taxonomy": ["sk__Archaea", "k__", "p__Euryarchaeota", "c__Methanomicrobia", "o__", "f__", "g__", "s__Arc_I_group_archaeon_BMIXfssc0709_Meth_Bin006"]}},{"id": "9532", "metadata": {"taxonomy": ["sk__Archaea", "k__", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanomicrobiales", "f__Methanomicrobiaceae", "g__Methanoculleus"]}},{"id": "15469", "metadata": {"taxonomy": ["sk__Archaea", "k__", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanomicrobiales", "f__Methanomicrobiaceae", "g__Methanoculleus", "s__Methanoculleus_chikugoensis"]}},{"id": "27689", "metadata": {"taxonomy": ["sk__Archaea", "k__", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanomicrobiales", "f__Methanomicrobiaceae", "g__Methanoculleus", "s__Methanoculleus_horonobensis"]}},{"id": "29526", "metadata": {"taxonomy": ["sk__Archaea", "k__", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanosarcinales", "f__", "g__", "s__Methanosarcinales_archaeon_Methan_04"]}},{"id": "31560", "metadata": {"taxonomy": ["sk__Archaea", "k__", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanosarcinales", "f__Methanosaetaceae", "g__Methanothrix"]}},{"id": "37072", "metadata": {"taxonomy": ["sk__Archaea", "k__", "p__Euryarchaeota", "c__Thermoplasmata", "o__Methanomassiliicoccales"]}},{"id": "11331", "metadata": {"taxonomy": ["sk__Archaea", "k__", "p__Euryarchaeota", "c__Thermoplasmata", "o__Methanomassiliicoccales", "f__Methanomassiliicoccaceae"]}},{"id": "4942", "metadata": {"taxonomy": ["sk__Bacteria"]}},{"id": "22213", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Acidobacteria"]}},{"id": "31640", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Actinobacteria"]}},{"id": "5898", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Bacteroidetes"]}},{"id": "27103", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Bacteroidetes", "c__", "o__", "f__", "g__", "s__Bacteroidetes_bacterium_41-46"]}},{"id": "30805", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Bacteroidetes", "c__", "o__", "f__", "g__", "s__Bacteroidetes_bacterium_ADurb.BinA012"]}},{"id": "21332", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Bacteroidetes", "c__", "o__", "f__", "g__", "s__Bacteroidetes_bacterium_RIFOXYC2_FULL_39_11"]}},{"id": "427", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Bacteroidetes", "c__Bacteroidia", "o__Bacteroidales"]}},{"id": "17830", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Bacteroidetes", "c__Bacteroidia", "o__Bacteroidales", "f__", "g__", "s__Bacteroidales_bacterium_6E"]}},{"id": "19208", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Bacteroidetes", "c__Bacteroidia", "o__Bacteroidales", "f__", "g__", "s__Bacteroidales_bacterium_Bact_08"]}},{"id": "32229", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Bacteroidetes", "c__Bacteroidia", "o__Bacteroidales", "f__", "g__", "s__Bacteroidales_bacterium_Bact_24"]}},{"id": "32700", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Bacteroidetes", "c__Bacteroidia", "o__Bacteroidales", "f__Lentimicrobiaceae", "g__Lentimicrobium"]}},{"id": "19833", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Bacteroidetes", "c__Bacteroidia", "o__Bacteroidales", "f__Lentimicrobiaceae", "g__Lentimicrobium", "s__Lentimicrobium_saccharophilum"]}},{"id": "32337", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Bacteroidetes", "c__Bacteroidia", "o__Bacteroidales", "f__Porphyromonadaceae", "g__Petrimonas"]}},{"id": "41460", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Bacteroidetes", "c__Flavobacteriia", "o__Flavobacteriales"]}},{"id": "29837", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Candidatus_Aminicenantes"]}},{"id": "31910", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Candidatus_Cloacimonetes"]}},{"id": "167", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Candidatus_Wildermuthbacteria"]}},{"id": "16678", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Chloroflexi"]}},{"id": "29561", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Chloroflexi", "c__Anaerolineae", "o__Anaerolineales", "f__Anaerolineaceae"]}},{"id": "1764", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Elusimicrobia"]}},{"id": "17923", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Elusimicrobia", "c__Endomicrobia", "o__Endomicrobiales"]}},{"id": "33208", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Firmicutes", "c__Bacilli", "o__Bacillales"]}},{"id": "26970", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Firmicutes", "c__Clostridia"]}},{"id": "29372", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Firmicutes", "c__Clostridia", "o__Clostridiales"]}},{"id": "38353", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Firmicutes", "c__Clostridia", "o__Clostridiales", "f__", "g__Intestinimonas"]}},{"id": "34136", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Firmicutes", "c__Clostridia", "o__Clostridiales", "f__", "g__Pseudoflavonifractor"]}},{"id": "33390", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Firmicutes", "c__Clostridia", "o__Clostridiales", "f__Clostridiaceae"]}},{"id": "34866", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Firmicutes", "c__Clostridia", "o__Clostridiales", "f__Clostridiales_Family_XIII._Incertae_Sedis"]}},{"id": "27380", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Firmicutes", "c__Clostridia", "o__Clostridiales", "f__Gracilibacteraceae"]}},{"id": "39668", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Firmicutes", "c__Clostridia", "o__Clostridiales", "f__Gracilibacteraceae", "g__Gracilibacter", "s__Gracilibacter_sp._BRH_c7a"]}},{"id": "15440", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Firmicutes", "c__Clostridia", "o__Clostridiales", "f__Peptococcaceae"]}},{"id": "28330", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Firmicutes", "c__Clostridia", "o__Clostridiales", "f__Peptococcaceae", "g__Candidatus_Dichloromethanomonas"]}},{"id": "28145", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Firmicutes", "c__Clostridia", "o__Clostridiales", "f__Ruminococcaceae"]}},{"id": "7343", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Firmicutes", "c__Clostridia", "o__Clostridiales", "f__Ruminococcaceae", "g__Ruminiclostridium"]}},{"id": "23154", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Firmicutes", "c__Clostridia", "o__Clostridiales", "f__Syntrophomonadaceae"]}},{"id": "2364", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Firmicutes", "c__Clostridia", "o__Thermoanaerobacterales"]}},{"id": "31655", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Ignavibacteriae", "c__Ignavibacteria"]}},{"id": "18405", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Ignavibacteriae", "c__Ignavibacteria", "o__Ignavibacteriales"]}},{"id": "36841", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Ignavibacteriae", "c__Ignavibacteria", "o__Ignavibacteriales", "f__Ignavibacteriaceae"]}},{"id": "3523", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Ignavibacteriae", "c__Ignavibacteria", "o__Ignavibacteriales", "f__Ignavibacteriaceae", "g__Ignavibacterium"]}},{"id": "1934", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Kiritimatiellaeota", "c__Kiritimatiellae"]}},{"id": "9335", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Lentisphaerae", "c__Lentisphaeria", "o__Lentisphaerales", "f__", "g__", "s__Lentisphaerales_bacterium_Lenti_01"]}},{"id": "25388", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Proteobacteria", "c__Betaproteobacteria", "o__Burkholderiales", "f__", "g__Thiomonas"]}},{"id": "28914", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Proteobacteria", "c__Betaproteobacteria", "o__Nitrosomonadales"]}},{"id": "20029", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Proteobacteria", "c__Betaproteobacteria", "o__Nitrosomonadales", "f__Thiobacillaceae", "g__Thiobacillus"]}},{"id": "21013", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Proteobacteria", "c__Betaproteobacteria", "o__Nitrosomonadales", "f__Thiobacillaceae", "g__Thiobacillus", "s__Thiobacillus_denitrificans"]}},{"id": "21997", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Proteobacteria", "c__Betaproteobacteria", "o__Rhodocyclales", "f__Azonexaceae"]}},{"id": "41881", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Proteobacteria", "c__Betaproteobacteria", "o__Rhodocyclales", "f__Azonexaceae", "g__Azonexus", "s__Azonexus_hydrophilus"]}},{"id": "2686", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Proteobacteria", "c__Betaproteobacteria", "o__Rhodocyclales", "f__Azonexaceae", "g__Dechloromonas"]}},{"id": "19222", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Proteobacteria", "c__Deltaproteobacteria", "o__Desulfuromonadales"]}},{"id": "12048", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Proteobacteria", "c__Deltaproteobacteria", "o__Desulfuromonadales", "f__Geobacteraceae"]}},{"id": "40711", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Proteobacteria", "c__Deltaproteobacteria", "o__Desulfuromonadales", "f__Geobacteraceae", "g__Geobacter"]}},{"id": "10852", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Proteobacteria", "c__Deltaproteobacteria", "o__Desulfuromonadales", "f__Geobacteraceae", "g__Geobacter", "s__Geobacter_lovleyi"]}},{"id": "3804", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Proteobacteria", "c__Deltaproteobacteria", "o__Syntrophobacterales", "f__Syntrophaceae"]}},{"id": "10058", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Proteobacteria", "c__Deltaproteobacteria", "o__Syntrophobacterales", "f__Syntrophaceae", "g__Smithella"]}},{"id": "7700", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Proteobacteria", "c__Deltaproteobacteria", "o__Syntrophobacterales", "f__Syntrophobacteraceae", "g__Syntrophobacter", "s__Syntrophobacter_fumaroxidans"]}},{"id": "7961", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Proteobacteria", "c__Epsilonproteobacteria", "o__Campylobacterales"]}},{"id": "19858", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Proteobacteria", "c__Epsilonproteobacteria", "o__Campylobacterales", "f__Helicobacteraceae"]}},{"id": "34830", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Proteobacteria", "c__Epsilonproteobacteria", "o__Campylobacterales", "f__Helicobacteraceae", "g__Sulfuricurvum", "s__Sulfuricurvum_kujiense"]}},{"id": "9278", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Methylococcales"]}},{"id": "10097", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Spirochaetes", "c__Spirochaetia", "o__Spirochaetales"]}},{"id": "1433", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Spirochaetes", "c__Spirochaetia", "o__Spirochaetales", "f__Spirochaetaceae"]}},{"id": "27830", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Spirochaetes", "c__Spirochaetia", "o__Spirochaetales", "f__Spirochaetaceae", "g__Sphaerochaeta", "s__Sphaerochaeta_globosa"]}},{"id": "36748", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Synergistetes"]}},{"id": "43323", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Synergistetes", "c__", "o__", "f__", "g__", "s__Synergistetes_bacterium_ADurb.Bin155"]}},{"id": "18694", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Synergistetes", "c__Synergistia", "o__Synergistales"]}},{"id": "25465", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Synergistetes", "c__Synergistia", "o__Synergistales", "f__Synergistaceae"]}},{"id": "5788", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Tenericutes", "c__", "o__", "f__", "g__", "s__Tenericutes_bacterium_RIFOXYD12_FULL_36_9"]}},{"id": "11173", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Tenericutes", "c__Mollicutes"]}},{"id": "37472", "metadata": {"taxonomy": ["sk__Bacteria", "k__", "p__Thermotogae", "c__Thermotogae", "o__Kosmotogales", "f__Kosmotogaceae", "g__Mesotoga"]}}],"columns": [{"id": "OFEK01", "metadata": null}]} \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_motu/ERR4702550_MERGED_FASTQ.mOTUs.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,4 @@ +#mOTU consensus_taxonomy count +ref_mOTU_v25_09575 k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Deltaproteobacteria order incertae sedis|f__Deltaproteobacteria fam. incertae sedis|g__Deltaproteobacteria gen. incertae sedis|s__Deltaproteobacteria bacterium RIFCSPLOWO2_02_56_12 1 +ref_mOTU_v25_05892 k__Bacteria|p__Nitrospirae|c__Nitrospira|o__Nitrospirales|f__Nitrospiraceae|g__Nitrospira|s__Nitrospira sp. SG-bin2 2 +Unmapped Unmapped 1
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_motu/ERR4702551_MERGED_FASTQ.mOTUs.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,4 @@ +#mOTU consensus_taxonomy count +ref_mOTU_v25_09323 k__Bacteria|p__Nitrospirae|c__Nitrospira|o__Nitrospirales|f__Nitrospiraceae|g__Nitrospira|s__Nitrospira sp. Ga0074138 2 +ref_mOTU_v25_09575 k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Deltaproteobacteria order incertae sedis|f__Deltaproteobacteria fam. incertae sedis|g__Deltaproteobacteria gen. incertae sedis|s__Deltaproteobacteria bacterium RIFCSPLOWO2_02_56_12 2 +Unmapped Unmapped 1
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_motu/ERR4702552_MERGED_FASTQ.mOTUs.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,3 @@ +#mOTU consensus_taxonomy count +ref_mOTU_v25_01636 k__Bacteria|p__Bacteroidetes|c__Chitinophagia|o__Chitinophagales|f__Chitinophagaceae|g__Hydrobacter|s__Hydrobacter penzbergensis 1 +Unmapped Unmapped 0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_motu/ERR4702553_MERGED_FASTQ.mOTUs.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,3 @@ +#mOTU consensus_taxonomy count +ref_mOTU_v25_01636 k__Bacteria|p__Bacteroidetes|c__Chitinophagia|o__Chitinophagales|f__Chitinophagaceae|g__Hydrobacter|s__Hydrobacter penzbergensis 2 +Unmapped Unmapped 1
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_motu/ERR4702554_MERGED_FASTQ.mOTUs.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,6 @@ +#mOTU consensus_taxonomy count +ref_mOTU_v25_09323 k__Bacteria|p__Nitrospirae|c__Nitrospira|o__Nitrospirales|f__Nitrospiraceae|g__Nitrospira|s__Nitrospira sp. Ga0074138 1 +ref_mOTU_v25_09950 k__Bacteria|p__Candidatus Omnitrophica|c__Candidatus Omnitrophica class incertae sedis|o__Candidatus Omnitrophica order incertae sedis|f__Candidatus Omnitrophica fam. incertae sedis|g__Candidatus Omnitrophica gen. incertae sedis|s__Candidatus Omnitrophica bacterium CG1_02_40_15 1 +ref_mOTU_v25_10648 k__Bacteria|p__Nitrospirae|c__Nitrospira|o__Nitrospirales|f__Nitrospiraceae|g__Nitrospira|s__Nitrospira sp. ST-bin5 1 +ref_mOTU_v25_09575 k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Deltaproteobacteria order incertae sedis|f__Deltaproteobacteria fam. incertae sedis|g__Deltaproteobacteria gen. incertae sedis|s__Deltaproteobacteria bacterium RIFCSPLOWO2_02_56_12 2 +Unmapped Unmapped 1
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_motu/ERR4702555_MERGED_FASTQ.mOTUs.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,5 @@ +#mOTU consensus_taxonomy count +ref_mOTU_v25_00201 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas sp. [Pseudomonas sp. P179/Pseudomonas sp. YS-1p/Pseudomonas sp. HMSC11A05/Pseudomonas sp. HMSC16B01/Pseudomonas sp. HMSC05H02/Pseudomonas sp. HMSC060G01/Pseudomonas sp. HMSC060F12/Pseudomonas sp. HMSC057H01/Pseudomonas sp. HMSC061A10/Pseudomonas sp. HMSC071F02/Pseudomonas sp. HMSC070B12/Pseudomonas sp. HMSC058B07/Pseudomonas sp. HMSC058C05/Pseudomonas sp. HMSC072F09/Pseudomonas sp. HMSC058A10/Pseudomonas sp. HMSC059F05/Pseudomonas sp. HMSC076A11/Pseudomonas sp. HMSC060G02/Pseudomonas sp. HMSC064G05/Pseudomonas sp. HMSC075A08/Pseudomonas sp. HMSC067D05/Pseudomonas sp. HMSC066B03/Pseudomonas sp. HMSC067F09/Pseudomonas sp. HMSC076A12/Pseudomonas sp. HMSC066A08/Pseudomonas sp. HMSC065H02/Pseudomonas sp. HMSC067G02/Pseudomonas sp. HMSC069G05/Pseudomonas sp. HMSC073F05/Pseudomonas sp. HMSC065H01/Pseudomonas aeruginosa/Pseudomonas putida/Pseudomonas otitidis/Pseudomonas denitrificans (nomen rejiciendum)] 1 +ref_mOTU_v25_05552 k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Syntrophobacterales|f__Syntrophobacterales fam. incertae sedis|g__Syntrophobacterales gen. incertae sedis|s__Syntrophobacterales sp. [Deltaproteobacteria bacterium RBG_16_58_17/Syntrophobacterales bacterium GWC2_56_13/Syntrophobacterales bacterium GWF2_56_9] 2 +ref_mOTU_v25_09575 k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Deltaproteobacteria order incertae sedis|f__Deltaproteobacteria fam. incertae sedis|g__Deltaproteobacteria gen. incertae sedis|s__Deltaproteobacteria bacterium RIFCSPLOWO2_02_56_12 2 +Unmapped Unmapped 2
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_motu/ERR4702556_MERGED_FASTQ.mOTUs.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,4 @@ +#mOTU consensus_taxonomy count +ref_mOTU_v25_01636 k__Bacteria|p__Bacteroidetes|c__Chitinophagia|o__Chitinophagales|f__Chitinophagaceae|g__Hydrobacter|s__Hydrobacter penzbergensis 1 +ref_mOTU_v25_05407 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas sp. Ga0074129 1 +Unmapped Unmapped 1
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_motu/ERR4702557_MERGED_FASTQ.mOTUs.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,6 @@ +#mOTU consensus_taxonomy count +ref_mOTU_v25_01636 k__Bacteria|p__Bacteroidetes|c__Chitinophagia|o__Chitinophagales|f__Chitinophagaceae|g__Hydrobacter|s__Hydrobacter penzbergensis 1 +ref_mOTU_v25_09359 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Rhizobiales fam. incertae sedis|g__Rhizobiales gen. incertae sedis|s__Rhizobiales bacterium CCH3-A5 1 +ref_mOTU_v25_05894 k__Bacteria|p__Proteobacteria|c__Proteobacteria class incertae sedis|o__Proteobacteria order incertae sedis|f__Proteobacteria fam. incertae sedis|g__Proteobacteria gen. incertae sedis|s__Proteobacteria bacterium SG_bin8 5 +ref_mOTU_v25_05895 k__Bacteria|p__Proteobacteria|c__Proteobacteria class incertae sedis|o__Proteobacteria order incertae sedis|f__Proteobacteria fam. incertae sedis|g__Proteobacteria gen. incertae sedis|s__Proteobacteria bacterium ST_bin15 51 +Unmapped Unmapped 0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_motu/ERR4702558_MERGED_FASTQ.mOTUs.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,8 @@ +#mOTU consensus_taxonomy count +ref_mOTU_v25_01636 k__Bacteria|p__Bacteroidetes|c__Chitinophagia|o__Chitinophagales|f__Chitinophagaceae|g__Hydrobacter|s__Hydrobacter penzbergensis 1 +ref_mOTU_v25_10647 k__Bacteria|p__Proteobacteria|c__Proteobacteria class incertae sedis|o__Proteobacteria order incertae sedis|f__Proteobacteria fam. incertae sedis|g__Proteobacteria gen. incertae sedis|s__Proteobacteria bacterium ST_bin14 3 +ref_mOTU_v25_05406 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas peli 4 +ref_mOTU_v25_09359 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Rhizobiales fam. incertae sedis|g__Rhizobiales gen. incertae sedis|s__Rhizobiales bacterium CCH3-A5 6 +ref_mOTU_v25_05894 k__Bacteria|p__Proteobacteria|c__Proteobacteria class incertae sedis|o__Proteobacteria order incertae sedis|f__Proteobacteria fam. incertae sedis|g__Proteobacteria gen. incertae sedis|s__Proteobacteria bacterium SG_bin8 11 +ref_mOTU_v25_05895 k__Bacteria|p__Proteobacteria|c__Proteobacteria class incertae sedis|o__Proteobacteria order incertae sedis|f__Proteobacteria fam. incertae sedis|g__Proteobacteria gen. incertae sedis|s__Proteobacteria bacterium ST_bin15 117 +Unmapped Unmapped 0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_motu/ERR4702559_MERGED_FASTQ.mOTUs.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,13 @@ +#mOTU consensus_taxonomy count +ref_mOTU_v25_00491 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Xenophilus|s__Xenophilus azovorans 1 +ref_mOTU_v25_08070 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodospirillales|f__Rhodospirillales fam. incertae sedis|g__Rhodospirillales gen. incertae sedis|s__Rhodospirillales bacterium URHD0017 1 +ref_mOTU_v25_10026 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Oxalobacteraceae|g__Herminiimonas|s__Herminiimonas arsenitoxidans 1 +ref_mOTU_v25_10028 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Immundisolibacterales|f__Immundisolibacteraceae|g__Immundisolibacter|s__Immundisolibacter cernigliae 2 +ref_mOTU_v25_05410 k__Bacteria|p__Proteobacteria|c__Proteobacteria class incertae sedis|o__Proteobacteria order incertae sedis|f__Proteobacteria fam. incertae sedis|g__Proteobacteria gen. incertae sedis|s__Proteobacteria bacterium ST_bin13 3 +ref_mOTU_v25_09154 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Curvibacter|s__Curvibacter sp. PAE-UM 3 +ref_mOTU_v25_10648 k__Bacteria|p__Nitrospirae|c__Nitrospira|o__Nitrospirales|f__Nitrospiraceae|g__Nitrospira|s__Nitrospira sp. ST-bin5 8 +ref_mOTU_v25_10769 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Nitrosomonadales|f__Nitrosomonadaceae|g__Nitrosomonas|s__Nitrosomonas sp. Is79A3 8 +ref_mOTU_v25_05892 k__Bacteria|p__Nitrospirae|c__Nitrospira|o__Nitrospirales|f__Nitrospiraceae|g__Nitrospira|s__Nitrospira sp. SG-bin2 12 +ref_mOTU_v25_05893 k__Bacteria|p__Nitrospirae|c__Nitrospira|o__Nitrospirales|f__Nitrospiraceae|g__Nitrospira|s__Nitrospira sp. ST-bin4 12 +ref_mOTU_v25_10647 k__Bacteria|p__Proteobacteria|c__Proteobacteria class incertae sedis|o__Proteobacteria order incertae sedis|f__Proteobacteria fam. incertae sedis|g__Proteobacteria gen. incertae sedis|s__Proteobacteria bacterium ST_bin14 12 +Unmapped Unmapped 2
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_motu/ERR4702560_MERGED_FASTQ.mOTUs.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,13 @@ +#mOTU consensus_taxonomy count +ref_mOTU_v25_03024 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Bradyrhizobiaceae|g__Afipia|s__Afipia birgiae [Afipia birgiae/Bradyrhizobium sp. CCH4-A6] 1 +ref_mOTU_v25_05409 k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadales fam. incertae sedis|g__Sphingomonadales gen. incertae sedis|s__Sphingomonadales bacterium Ga0077557 1 +ref_mOTU_v25_00472 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Betaproteobacteria order incertae sedis|f__Betaproteobacteria fam. incertae sedis|g__Candidatus Accumulibacter|s__Candidatus Accumulibacter sp. 66-26 2 +ref_mOTU_v25_09154 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Comamonadaceae|g__Curvibacter|s__Curvibacter sp. PAE-UM 3 +ref_mOTU_v25_10026 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Oxalobacteraceae|g__Herminiimonas|s__Herminiimonas arsenitoxidans 3 +ref_mOTU_v25_05410 k__Bacteria|p__Proteobacteria|c__Proteobacteria class incertae sedis|o__Proteobacteria order incertae sedis|f__Proteobacteria fam. incertae sedis|g__Proteobacteria gen. incertae sedis|s__Proteobacteria bacterium ST_bin13 4 +ref_mOTU_v25_10028 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Immundisolibacterales|f__Immundisolibacteraceae|g__Immundisolibacter|s__Immundisolibacter cernigliae 4 +ref_mOTU_v25_10769 k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Nitrosomonadales|f__Nitrosomonadaceae|g__Nitrosomonas|s__Nitrosomonas sp. Is79A3 8 +ref_mOTU_v25_05892 k__Bacteria|p__Nitrospirae|c__Nitrospira|o__Nitrospirales|f__Nitrospiraceae|g__Nitrospira|s__Nitrospira sp. SG-bin2 9 +ref_mOTU_v25_10647 k__Bacteria|p__Proteobacteria|c__Proteobacteria class incertae sedis|o__Proteobacteria order incertae sedis|f__Proteobacteria fam. incertae sedis|g__Proteobacteria gen. incertae sedis|s__Proteobacteria bacterium ST_bin14 11 +ref_mOTU_v25_05893 k__Bacteria|p__Nitrospirae|c__Nitrospira|o__Nitrospirales|f__Nitrospiraceae|g__Nitrospira|s__Nitrospira sp. ST-bin4 16 +Unmapped Unmapped 2
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_motu/ERR4702561_MERGED_FASTQ.mOTUs.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,4 @@ +#mOTU consensus_taxonomy count +ref_mOTU_v25_00085 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacterales fam. [Yersiniaceae/Enterobacteriaceae]|g__Enterobacterales gen. [Enterobacter/Escherichia/Klebsiella/Serratia]|s__Enterobacterales sp. [Klebsiella sp. D5A/Klebsiella sp. KTE92/Klebsiella sp. 10982/Klebsiella variicola CAG:634/Klebsiella quasipneumoniae/Klebsiella sp. NFIX54/Klebsiella sp. NFIX44/Klebsiella sp. NFIX43/Klebsiella sp. NFIX42/Klebsiella sp. NFIX41/Klebsiella sp. NFIX40/Klebsiella sp. NFIX38/Klebsiella sp. NFIX37/Klebsiella sp. NFIX36/Klebsiella sp. NFIX35/Klebsiella sp. NFIX34/Klebsiella sp. NFIX33/Klebsiella sp. NFIX30/Klebsiella sp. NFIX29/Klebsiella sp. NFIX27/Klebsiella sp. NFIX22/Klebsiella sp. NFIX21/Klebsiella sp. NFIX20/Klebsiella sp. NFIX19/Klebsiella sp. NFIX18/Klebsiella sp. NFIX26/Klebsiella sp. NFIX25/Klebsiella sp. NFIX24/Klebsiella sp. NFIX23/Klebsiella sp. NFIX17/Klebsiella sp. NFIX16/Klebsiella sp. NFIX15/Klebsiella sp. NFIX13/Klebsiella sp. NFIX12/Klebsiella sp. NFIX11/Klebsiella sp. NFIX56/Klebsiella sp. NFPP35/Klebsiella sp. HMSC22F09/Klebsiella sp. HMSC25G12/Klebsiella sp. HMSC16A12/Klebsiella sp. HMSC16C06/Klebsiella sp. KGM-IMP216/Klebsiella sp. AA405/Klebsiella variicola/Enterobacter cloacae/Escherichia coli/Klebsiella oxytoca/Klebsiella pneumoniae/Serratia marcescens/Klebsiella sp. 4_1_44FAA/Klebsiella sp. S1/Klebsiella sp. MS 92-3] 2 +ref_mOTU_v25_01636 k__Bacteria|p__Bacteroidetes|c__Chitinophagia|o__Chitinophagales|f__Chitinophagaceae|g__Hydrobacter|s__Hydrobacter penzbergensis 4 +Unmapped Unmapped 0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_motu/ERR4702562_MERGED_FASTQ.mOTUs.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,3 @@ +#mOTU consensus_taxonomy count +ref_mOTU_v25_01636 k__Bacteria|p__Bacteroidetes|c__Chitinophagia|o__Chitinophagales|f__Chitinophagaceae|g__Hydrobacter|s__Hydrobacter penzbergensis 3 +Unmapped Unmapped 0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_motu/ERR4702563_MERGED_FASTQ.mOTUs.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,3 @@ +#mOTU consensus_taxonomy count +ref_mOTU_v25_09575 k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Deltaproteobacteria order incertae sedis|f__Deltaproteobacteria fam. incertae sedis|g__Deltaproteobacteria gen. incertae sedis|s__Deltaproteobacteria bacterium RIFCSPLOWO2_02_56_12 1 +Unmapped Unmapped 0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_motu/ERR4702564_MERGED_FASTQ.mOTUs.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,5 @@ +#mOTU consensus_taxonomy count +ref_mOTU_v25_00789 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Alteromonadales|f__Alteromonadaceae|g__Alteromonas|s__Alteromonas sp. [Alteromonas sp. W12/Alteromonas abrolhosensis/Alteromonas marina/Alteromonas macleodii] 1 +ref_mOTU_v25_09575 k__Bacteria|p__Proteobacteria|c__Deltaproteobacteria|o__Deltaproteobacteria order incertae sedis|f__Deltaproteobacteria fam. incertae sedis|g__Deltaproteobacteria gen. incertae sedis|s__Deltaproteobacteria bacterium RIFCSPLOWO2_02_56_12 1 +ref_mOTU_v25_00791 k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Alteromonadales|f__Alteromonadaceae|g__Alteromonas|s__Alteromonas mediterranea 3 +Unmapped Unmapped 0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_motu/MGYS00005650_metadata.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,936 @@ +analysis_id name group_type description download_url pipeline_version experiment_type +MGYA00575713 ERR4702554_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_Bacteria_large_SRP.RF01854.fasta.gz 5.0 metagenomic +MGYA00575713 ERR4702554_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_Bacteria_small_SRP.RF00169.fasta.gz 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ.fasta.gz 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ_GO.csv 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ_GO_slim.csv 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ_InterPro.csv 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ_InterPro.tsv.gz 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ_LSU.fasta.gz 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ_LSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ_LSU_OTU.tsv 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ_SSU.fasta.gz 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ_SSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ_SSU_OTU.tsv 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ_ko.tsv 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ_pfam.tsv 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ_predicted_cds.faa.gz 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ_predicted_orf.ffn.gz 5.0 metagenomic +MGYA00575713 ERR4702554_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_RNaseP_bact_a.RF00010.fasta.gz 5.0 metagenomic +MGYA00575713 ERR4702554_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_alpha_tmRNA.RF01849.fasta.gz 5.0 metagenomic +MGYA00575713 ERR4702554_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_tRNA-Sec.RF01852.fasta.gz 5.0 metagenomic +MGYA00575713 ERR4702554_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_tmRNA.RF00023.fasta.gz 5.0 metagenomic +MGYA00575713 ERR4702554_MERGED_FASTQ.mOTUs.tsv Taxonomic analysis mOTU mOTUs taxonomic profile https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_MERGED_FASTQ.mOTUs.tsv 5.0 metagenomic +MGYA00575713 ERR4702554_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575713/file/ERR4702554_tRNA.RF00005.fasta.gz 5.0 metagenomic +MGYA00575714 ERR4702553_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_Bacteria_large_SRP.RF01854.fasta.gz 5.0 metatranscriptomic +MGYA00575714 ERR4702553_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_Bacteria_small_SRP.RF00169.fasta.gz 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ.fasta.gz 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ_GO.csv 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ_GO_slim.csv 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ_InterPro.csv 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ_InterPro.tsv.gz 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ_LSU.fasta.gz 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ_LSU_MAPSeq.mseq.gz 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ_LSU_OTU.tsv 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ_SSU.fasta.gz 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ_SSU_MAPSeq.mseq.gz 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ_SSU_OTU.tsv 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ_ko.tsv 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ_pfam.tsv 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ_predicted_cds.faa.gz 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ_predicted_orf.ffn.gz 5.0 metatranscriptomic +MGYA00575714 ERR4702553_Metazoa_SRP.RF00017.fasta.gz non-coding RNAs Predicted Metazoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_Metazoa_SRP.RF00017.fasta.gz 5.0 metatranscriptomic +MGYA00575714 ERR4702553_RNaseP_arch.RF00373.fasta.gz non-coding RNAs Predicted Archaeal RNase P RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_RNaseP_arch.RF00373.fasta.gz 5.0 metatranscriptomic +MGYA00575714 ERR4702553_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_RNaseP_bact_a.RF00010.fasta.gz 5.0 metatranscriptomic +MGYA00575714 ERR4702553_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_alpha_tmRNA.RF01849.fasta.gz 5.0 metatranscriptomic +MGYA00575714 ERR4702553_MERGED_FASTQ.mOTUs.tsv Taxonomic analysis mOTU mOTUs taxonomic profile https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_MERGED_FASTQ.mOTUs.tsv 5.0 metatranscriptomic +MGYA00575714 ERR4702553_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_tRNA.RF00005.fasta.gz 5.0 metatranscriptomic +MGYA00575714 ERR4702553_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575714/file/ERR4702553_tmRNA.RF00023.fasta.gz 5.0 metatranscriptomic +MGYA00575715 ERR4702564_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_Bacteria_large_SRP.RF01854.fasta.gz 5.0 metagenomic +MGYA00575715 ERR4702564_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_Bacteria_small_SRP.RF00169.fasta.gz 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ.fasta.gz 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ_GO.csv 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ_GO_slim.csv 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ_InterPro.csv 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ_InterPro.tsv.gz 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ_LSU.fasta.gz 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ_LSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ_LSU_OTU.tsv 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ_SSU.fasta.gz 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ_SSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ_SSU_OTU.tsv 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ_ko.tsv 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ_pfam.tsv 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ_predicted_cds.faa.gz 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ_predicted_orf.ffn.gz 5.0 metagenomic +MGYA00575715 ERR4702564_Metazoa_SRP.RF00017.fasta.gz non-coding RNAs Predicted Metazoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_Metazoa_SRP.RF00017.fasta.gz 5.0 metagenomic +MGYA00575715 ERR4702564_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_RNaseP_bact_a.RF00010.fasta.gz 5.0 metagenomic +MGYA00575715 ERR4702564_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_alpha_tmRNA.RF01849.fasta.gz 5.0 metagenomic +MGYA00575715 ERR4702564_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_tmRNA.RF00023.fasta.gz 5.0 metagenomic +MGYA00575715 ERR4702564_MERGED_FASTQ.mOTUs.tsv Taxonomic analysis mOTU mOTUs taxonomic profile https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_MERGED_FASTQ.mOTUs.tsv 5.0 metagenomic +MGYA00575715 ERR4702564_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_tRNA-Sec.RF01852.fasta.gz 5.0 metagenomic +MGYA00575715 ERR4702564_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575715/file/ERR4702564_tRNA.RF00005.fasta.gz 5.0 metagenomic +MGYA00575716 ERR4702551_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_Bacteria_large_SRP.RF01854.fasta.gz 5.0 metagenomic +MGYA00575716 ERR4702551_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_Bacteria_small_SRP.RF00169.fasta.gz 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ.fasta.gz 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ_GO.csv 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ_GO_slim.csv 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ_InterPro.csv 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ_InterPro.tsv.gz 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ_LSU.fasta.gz 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ_LSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ_LSU_OTU.tsv 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ_SSU.fasta.gz 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ_SSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ_SSU_OTU.tsv 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ_ko.tsv 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ_pfam.tsv 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ_predicted_cds.faa.gz 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ_predicted_orf.ffn.gz 5.0 metagenomic +MGYA00575716 ERR4702551_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_RNaseP_bact_a.RF00010.fasta.gz 5.0 metagenomic +MGYA00575716 ERR4702551_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_alpha_tmRNA.RF01849.fasta.gz 5.0 metagenomic +MGYA00575716 ERR4702551_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_tRNA-Sec.RF01852.fasta.gz 5.0 metagenomic +MGYA00575716 ERR4702551_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_tmRNA.RF00023.fasta.gz 5.0 metagenomic +MGYA00575716 ERR4702551_MERGED_FASTQ.mOTUs.tsv Taxonomic analysis mOTU mOTUs taxonomic profile https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_MERGED_FASTQ.mOTUs.tsv 5.0 metagenomic +MGYA00575716 ERR4702551_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575716/file/ERR4702551_tRNA.RF00005.fasta.gz 5.0 metagenomic +MGYA00575717 ERR4702552_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_Bacteria_large_SRP.RF01854.fasta.gz 5.0 metatranscriptomic +MGYA00575717 ERR4702552_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_Bacteria_small_SRP.RF00169.fasta.gz 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ.fasta.gz 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ_GO.csv 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ_GO_slim.csv 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ_InterPro.csv 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ_InterPro.tsv.gz 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ_LSU.fasta.gz 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ_LSU_MAPSeq.mseq.gz 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ_LSU_OTU.tsv 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ_SSU.fasta.gz 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ_SSU_MAPSeq.mseq.gz 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ_SSU_OTU.tsv 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ_ko.tsv 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ_pfam.tsv 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ_predicted_cds.faa.gz 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ_predicted_orf.ffn.gz 5.0 metatranscriptomic +MGYA00575717 ERR4702552_Metazoa_SRP.RF00017.fasta.gz non-coding RNAs Predicted Metazoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_Metazoa_SRP.RF00017.fasta.gz 5.0 metatranscriptomic +MGYA00575717 ERR4702552_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_RNaseP_bact_a.RF00010.fasta.gz 5.0 metatranscriptomic +MGYA00575717 ERR4702552_RNaseP_nuc.RF00009.fasta.gz non-coding RNAs Predicted Nuclear RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_RNaseP_nuc.RF00009.fasta.gz 5.0 metatranscriptomic +MGYA00575717 ERR4702552_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_tmRNA.RF00023.fasta.gz 5.0 metatranscriptomic +MGYA00575717 ERR4702552_MERGED_FASTQ.mOTUs.tsv Taxonomic analysis mOTU mOTUs taxonomic profile https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_MERGED_FASTQ.mOTUs.tsv 5.0 metatranscriptomic +MGYA00575717 ERR4702552_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575717/file/ERR4702552_tRNA.RF00005.fasta.gz 5.0 metatranscriptomic +MGYA00575718 ERR4702563_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_Bacteria_small_SRP.RF00169.fasta.gz 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ.fasta.gz 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ_GO.csv 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ_GO_slim.csv 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ_InterPro.csv 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ_InterPro.tsv.gz 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ_LSU.fasta.gz 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ_LSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ_LSU_OTU.tsv 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ_SSU.fasta.gz 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ_SSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ_SSU_OTU.tsv 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ_ko.tsv 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ_pfam.tsv 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ_predicted_cds.faa.gz 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ_predicted_orf.ffn.gz 5.0 metagenomic +MGYA00575718 ERR4702563_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_RNaseP_bact_a.RF00010.fasta.gz 5.0 metagenomic +MGYA00575718 ERR4702563_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_alpha_tmRNA.RF01849.fasta.gz 5.0 metagenomic +MGYA00575718 ERR4702563_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_tRNA-Sec.RF01852.fasta.gz 5.0 metagenomic +MGYA00575718 ERR4702563_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_tRNA.RF00005.fasta.gz 5.0 metagenomic +MGYA00575718 ERR4702563_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_tmRNA.RF00023.fasta.gz 5.0 metagenomic +MGYA00575718 ERR4702563_MERGED_FASTQ.mOTUs.tsv Taxonomic analysis mOTU mOTUs taxonomic profile https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575718/file/ERR4702563_MERGED_FASTQ.mOTUs.tsv 5.0 metagenomic +MGYA00575719 ERR4702559_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_Bacteria_large_SRP.RF01854.fasta.gz 5.0 metagenomic +MGYA00575719 ERR4702559_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_Bacteria_small_SRP.RF00169.fasta.gz 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ.fasta.gz 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ_GO.csv 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ_GO_slim.csv 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ_InterPro.csv 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ_InterPro.tsv.gz 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ_LSU.fasta.gz 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ_LSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ_LSU_OTU.tsv 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ_SSU.fasta.gz 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ_SSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ_SSU_OTU.tsv 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ_ko.tsv 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ_pfam.tsv 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ_predicted_cds.faa.gz 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ_predicted_orf.ffn.gz 5.0 metagenomic +MGYA00575719 ERR4702559_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_RNaseP_bact_a.RF00010.fasta.gz 5.0 metagenomic +MGYA00575719 ERR4702559_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_alpha_tmRNA.RF01849.fasta.gz 5.0 metagenomic +MGYA00575719 ERR4702559_beta_tmRNA.RF01850.fasta.gz non-coding RNAs Predicted beta tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_beta_tmRNA.RF01850.fasta.gz 5.0 metagenomic +MGYA00575719 ERR4702559_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_tmRNA.RF00023.fasta.gz 5.0 metagenomic +MGYA00575719 ERR4702559_MERGED_FASTQ.mOTUs.tsv Taxonomic analysis mOTU mOTUs taxonomic profile https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_MERGED_FASTQ.mOTUs.tsv 5.0 metagenomic +MGYA00575719 ERR4702559_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_tRNA-Sec.RF01852.fasta.gz 5.0 metagenomic +MGYA00575719 ERR4702559_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575719/file/ERR4702559_tRNA.RF00005.fasta.gz 5.0 metagenomic +MGYA00575720 ERR4702558_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_Bacteria_small_SRP.RF00169.fasta.gz 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ.fasta.gz 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ_GO.csv 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ_GO_slim.csv 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ_InterPro.csv 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ_InterPro.tsv.gz 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ_LSU.fasta.gz 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ_LSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ_LSU_OTU.tsv 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ_SSU.fasta.gz 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ_SSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ_SSU_OTU.tsv 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ_ko.tsv 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ_pfam.tsv 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ_predicted_cds.faa.gz 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ_predicted_orf.ffn.gz 5.0 metagenomic +MGYA00575720 ERR4702558_Metazoa_SRP.RF00017.fasta.gz non-coding RNAs Predicted Metazoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_Metazoa_SRP.RF00017.fasta.gz 5.0 metagenomic +MGYA00575720 ERR4702558_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_RNaseP_bact_a.RF00010.fasta.gz 5.0 metagenomic +MGYA00575720 ERR4702558_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_alpha_tmRNA.RF01849.fasta.gz 5.0 metagenomic +MGYA00575720 ERR4702558_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_tRNA-Sec.RF01852.fasta.gz 5.0 metagenomic +MGYA00575720 ERR4702558_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_tmRNA.RF00023.fasta.gz 5.0 metagenomic +MGYA00575720 ERR4702558_MERGED_FASTQ.mOTUs.tsv Taxonomic analysis mOTU mOTUs taxonomic profile https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_MERGED_FASTQ.mOTUs.tsv 5.0 metagenomic +MGYA00575720 ERR4702558_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575720/file/ERR4702558_tRNA.RF00005.fasta.gz 5.0 metagenomic +MGYA00575721 ERR4702562_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_Bacteria_small_SRP.RF00169.fasta.gz 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ.fasta.gz 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ_GO.csv 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ_GO_slim.csv 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ_InterPro.csv 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ_InterPro.tsv.gz 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ_LSU.fasta.gz 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ_LSU_MAPSeq.mseq.gz 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ_LSU_OTU.tsv 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ_SSU.fasta.gz 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ_SSU_MAPSeq.mseq.gz 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ_SSU_OTU.tsv 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ_ko.tsv 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ_pfam.tsv 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ_predicted_cds.faa.gz 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ_predicted_orf.ffn.gz 5.0 metatranscriptomic +MGYA00575721 ERR4702562_Protozoa_SRP.RF01856.fasta.gz non-coding RNAs Predicted Protozoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_Protozoa_SRP.RF01856.fasta.gz 5.0 metatranscriptomic +MGYA00575721 ERR4702562_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_RNaseP_bact_a.RF00010.fasta.gz 5.0 metatranscriptomic +MGYA00575721 ERR4702562_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_alpha_tmRNA.RF01849.fasta.gz 5.0 metatranscriptomic +MGYA00575721 ERR4702562_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_tRNA.RF00005.fasta.gz 5.0 metatranscriptomic +MGYA00575721 ERR4702562_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_tmRNA.RF00023.fasta.gz 5.0 metatranscriptomic +MGYA00575721 ERR4702562_MERGED_FASTQ.mOTUs.tsv Taxonomic analysis mOTU mOTUs taxonomic profile https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575721/file/ERR4702562_MERGED_FASTQ.mOTUs.tsv 5.0 metatranscriptomic +MGYA00575722 ERR4702561_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_Bacteria_small_SRP.RF00169.fasta.gz 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ.fasta.gz 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ.mOTUs.tsv Taxonomic analysis mOTU mOTUs taxonomic profile https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ.mOTUs.tsv 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ_GO.csv 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ_GO_slim.csv 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ_InterPro.csv 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ_InterPro.tsv.gz 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ_LSU.fasta.gz 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ_LSU_MAPSeq.mseq.gz 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ_LSU_OTU.tsv 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ_SSU.fasta.gz 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ_SSU_MAPSeq.mseq.gz 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ_SSU_OTU.tsv 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ_ko.tsv 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ_pfam.tsv 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ_predicted_cds.faa.gz 5.0 metatranscriptomic +MGYA00575722 ERR4702561_MERGED_FASTQ_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_MERGED_FASTQ_predicted_orf.ffn.gz 5.0 metatranscriptomic +MGYA00575722 ERR4702561_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_RNaseP_bact_a.RF00010.fasta.gz 5.0 metatranscriptomic +MGYA00575722 ERR4702561_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_alpha_tmRNA.RF01849.fasta.gz 5.0 metatranscriptomic +MGYA00575722 ERR4702561_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_tRNA.RF00005.fasta.gz 5.0 metatranscriptomic +MGYA00575722 ERR4702561_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575722/file/ERR4702561_tmRNA.RF00023.fasta.gz 5.0 metatranscriptomic +MGYA00575723 ERR4702556_Archaea_SRP.RF01857.fasta.gz non-coding RNAs Predicted Archaea SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_Archaea_SRP.RF01857.fasta.gz 5.0 metatranscriptomic +MGYA00575723 ERR4702556_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_Bacteria_large_SRP.RF01854.fasta.gz 5.0 metatranscriptomic +MGYA00575723 ERR4702556_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_Bacteria_small_SRP.RF00169.fasta.gz 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ.fasta.gz 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ_GO.csv 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ_GO_slim.csv 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ_InterPro.csv 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ_InterPro.tsv.gz 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ_LSU.fasta.gz 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ_LSU_MAPSeq.mseq.gz 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ_LSU_OTU.tsv 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ_SSU.fasta.gz 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ_SSU_MAPSeq.mseq.gz 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ_SSU_OTU.tsv 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ_ko.tsv 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ_pfam.tsv 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ_predicted_cds.faa.gz 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ_predicted_orf.ffn.gz 5.0 metatranscriptomic +MGYA00575723 ERR4702556_Metazoa_SRP.RF00017.fasta.gz non-coding RNAs Predicted Metazoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_Metazoa_SRP.RF00017.fasta.gz 5.0 metatranscriptomic +MGYA00575723 ERR4702556_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_RNaseP_bact_a.RF00010.fasta.gz 5.0 metatranscriptomic +MGYA00575723 ERR4702556_RNaseP_nuc.RF00009.fasta.gz non-coding RNAs Predicted Nuclear RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_RNaseP_nuc.RF00009.fasta.gz 5.0 metatranscriptomic +MGYA00575723 ERR4702556_MERGED_FASTQ.mOTUs.tsv Taxonomic analysis mOTU mOTUs taxonomic profile https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_MERGED_FASTQ.mOTUs.tsv 5.0 metatranscriptomic +MGYA00575723 ERR4702556_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_tRNA.RF00005.fasta.gz 5.0 metatranscriptomic +MGYA00575723 ERR4702556_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575723/file/ERR4702556_tmRNA.RF00023.fasta.gz 5.0 metatranscriptomic +MGYA00575724 ERR4702560_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_Bacteria_large_SRP.RF01854.fasta.gz 5.0 metagenomic +MGYA00575724 ERR4702560_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_Bacteria_small_SRP.RF00169.fasta.gz 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ.fasta.gz 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ_GO.csv 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ_GO_slim.csv 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ_InterPro.csv 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ_InterPro.tsv.gz 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ_LSU.fasta.gz 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ_LSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ_LSU_OTU.tsv 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ_SSU.fasta.gz 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ_SSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ_SSU_OTU.tsv 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ_ko.tsv 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ_pfam.tsv 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ_predicted_cds.faa.gz 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ_predicted_orf.ffn.gz 5.0 metagenomic +MGYA00575724 ERR4702560_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_RNaseP_bact_a.RF00010.fasta.gz 5.0 metagenomic +MGYA00575724 ERR4702560_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_alpha_tmRNA.RF01849.fasta.gz 5.0 metagenomic +MGYA00575724 ERR4702560_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_tRNA-Sec.RF01852.fasta.gz 5.0 metagenomic +MGYA00575724 ERR4702560_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_tmRNA.RF00023.fasta.gz 5.0 metagenomic +MGYA00575724 ERR4702560_MERGED_FASTQ.mOTUs.tsv Taxonomic analysis mOTU mOTUs taxonomic profile https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_MERGED_FASTQ.mOTUs.tsv 5.0 metagenomic +MGYA00575724 ERR4702560_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575724/file/ERR4702560_tRNA.RF00005.fasta.gz 5.0 metagenomic +MGYA00575725 ERR4702557_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_Bacteria_small_SRP.RF00169.fasta.gz 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ.fasta.gz 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ_GO.csv 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ_GO_slim.csv 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ_InterPro.csv 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ_InterPro.tsv.gz 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ_LSU.fasta.gz 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ_LSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ_LSU_OTU.tsv 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ_SSU.fasta.gz 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ_SSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ_SSU_OTU.tsv 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ_ko.tsv 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ_pfam.tsv 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ_predicted_cds.faa.gz 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ_predicted_orf.ffn.gz 5.0 metagenomic +MGYA00575725 ERR4702557_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_RNaseP_bact_a.RF00010.fasta.gz 5.0 metagenomic +MGYA00575725 ERR4702557_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_alpha_tmRNA.RF01849.fasta.gz 5.0 metagenomic +MGYA00575725 ERR4702557_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_tRNA-Sec.RF01852.fasta.gz 5.0 metagenomic +MGYA00575725 ERR4702557_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_tRNA.RF00005.fasta.gz 5.0 metagenomic +MGYA00575725 ERR4702557_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_tmRNA.RF00023.fasta.gz 5.0 metagenomic +MGYA00575725 ERR4702557_MERGED_FASTQ.mOTUs.tsv Taxonomic analysis mOTU mOTUs taxonomic profile https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575725/file/ERR4702557_MERGED_FASTQ.mOTUs.tsv 5.0 metagenomic +MGYA00575726 ERR4702555_Archaea_SRP.RF01857.fasta.gz non-coding RNAs Predicted Archaea SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_Archaea_SRP.RF01857.fasta.gz 5.0 metagenomic +MGYA00575726 ERR4702555_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_Bacteria_large_SRP.RF01854.fasta.gz 5.0 metagenomic +MGYA00575726 ERR4702555_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_Bacteria_small_SRP.RF00169.fasta.gz 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ.fasta.gz 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ_GO.csv 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ_GO_slim.csv 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ_InterPro.csv 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ_InterPro.tsv.gz 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ_LSU.fasta.gz 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ_LSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ_LSU_OTU.tsv 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ_SSU.fasta.gz 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ_SSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ_SSU_OTU.tsv 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ_ko.tsv 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ_pfam.tsv 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ_predicted_cds.faa.gz 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ_predicted_orf.ffn.gz 5.0 metagenomic +MGYA00575726 ERR4702555_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_RNaseP_bact_a.RF00010.fasta.gz 5.0 metagenomic +MGYA00575726 ERR4702555_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_alpha_tmRNA.RF01849.fasta.gz 5.0 metagenomic +MGYA00575726 ERR4702555_beta_tmRNA.RF01850.fasta.gz non-coding RNAs Predicted beta tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_beta_tmRNA.RF01850.fasta.gz 5.0 metagenomic +MGYA00575726 ERR4702555_MERGED_FASTQ.mOTUs.tsv Taxonomic analysis mOTU mOTUs taxonomic profile https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_MERGED_FASTQ.mOTUs.tsv 5.0 metagenomic +MGYA00575726 ERR4702555_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_tRNA-Sec.RF01852.fasta.gz 5.0 metagenomic +MGYA00575726 ERR4702555_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_tRNA.RF00005.fasta.gz 5.0 metagenomic +MGYA00575726 ERR4702555_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575726/file/ERR4702555_tmRNA.RF00023.fasta.gz 5.0 metagenomic +MGYA00575727 ERR4702550_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_Bacteria_large_SRP.RF01854.fasta.gz 5.0 metagenomic +MGYA00575727 ERR4702550_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_Bacteria_small_SRP.RF00169.fasta.gz 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ.fasta.gz 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ_GO.csv 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ_GO_slim.csv 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ_InterPro.csv 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ_InterPro.tsv.gz 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ_LSU.fasta.gz 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ_LSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ_LSU_OTU.tsv 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ_LSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ_LSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ_SSU.fasta.gz 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ_SSU_MAPSeq.mseq.gz 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ_SSU_OTU.tsv 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ_ko.tsv 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ_pfam.tsv 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ_predicted_cds.faa.gz 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ_predicted_orf.ffn.gz 5.0 metagenomic +MGYA00575727 ERR4702550_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_RNaseP_bact_a.RF00010.fasta.gz 5.0 metagenomic +MGYA00575727 ERR4702550_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_alpha_tmRNA.RF01849.fasta.gz 5.0 metagenomic +MGYA00575727 ERR4702550_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_tRNA-Sec.RF01852.fasta.gz 5.0 metagenomic +MGYA00575727 ERR4702550_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_tmRNA.RF00023.fasta.gz 5.0 metagenomic +MGYA00575727 ERR4702550_MERGED_FASTQ.mOTUs.tsv Taxonomic analysis mOTU mOTUs taxonomic profile https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_MERGED_FASTQ.mOTUs.tsv 5.0 metagenomic +MGYA00575727 ERR4702550_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575727/file/ERR4702550_tRNA.RF00005.fasta.gz 5.0 metagenomic +MGYA00583595 ERZ1758448_Archaea_SRP.RF01857.fasta.gz non-coding RNAs Predicted Archaea SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_Archaea_SRP.RF01857.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_FASTA.fasta.gz Sequence data Processed contigs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_GO.csv 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_GO_slim.csv 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_InterPro.csv 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_InterPro.tsv.gz 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_LSU.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_LSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_LSU_OTU.tsv 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_LSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_LSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_SSU.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_SSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_SSU_OTU.tsv 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_SSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_SSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_annotations.gff.bgz Functional analysis Combined (eggNOG, InterPro, antiSMASH) annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_annotations.gff.bgz 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_diamond.tsv.gz Functional analysis Diamond annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_diamond.tsv.gz 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_emapper.annotations.tsv.gz Functional analysis eggNOG annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_emapper.annotations.tsv.gz 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_emapper.seed_orthologs.tsv.gz Functional analysis eggNOG seed orthologs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_emapper.seed_orthologs.tsv.gz 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_ko.tsv 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_pfam.tsv 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_predicted_cds.faa.gz 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_predicted_orf.ffn.gz 5.0 assembly +MGYA00583595 ERZ1758448_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_alpha_tmRNA.RF01849.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_Bacteria_large_SRP.RF01854.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_Bacteria_small_SRP.RF00169.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_Dictyostelium_SRP.RF01570.fasta.gz non-coding RNAs Predicted Dictyostelium SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_Dictyostelium_SRP.RF01570.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_antismash.embl.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_antismash.embl.gz 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_antismash.gbk.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_antismash.gbk.gz 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_antismash.gff.bgz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_antismash.gff.bgz 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_antismash_summary.csv Pathways and Systems antiSMASH summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_antismash_summary.csv 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_gp.csv Pathways and Systems Genome Properties annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_gp.csv 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_kegg_pathways.csv Pathways and Systems KEGG pathway annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_kegg_pathways.csv 5.0 assembly +MGYA00583595 ERZ1758448_FASTA_kegg_pathways_contigs.tsv Pathways and Systems KEGG pathway annotation (contig) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_FASTA_kegg_pathways_contigs.tsv 5.0 assembly +MGYA00583595 ERZ1758448_Metazoa_SRP.RF00017.fasta.gz non-coding RNAs Predicted Metazoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_Metazoa_SRP.RF00017.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_Plant_SRP.RF01855.fasta.gz non-coding RNAs Predicted Plant SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_Plant_SRP.RF01855.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_Protozoa_SRP.RF01856.fasta.gz non-coding RNAs Predicted Protozoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_Protozoa_SRP.RF01856.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_RNaseP_arch.RF00373.fasta.gz non-coding RNAs Predicted Archaeal RNase P RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_RNaseP_arch.RF00373.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_RNaseP_bact_a.RF00010.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_RNaseP_bact_b.RF00011.fasta.gz non-coding RNAs Predicted Bacterial RNase P class B RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_RNaseP_bact_b.RF00011.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_RNaseP_nuc.RF00009.fasta.gz non-coding RNAs Predicted Nuclear RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_RNaseP_nuc.RF00009.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_RNase_MRP.RF00030.fasta.gz non-coding RNAs Predicted RNase MRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_RNase_MRP.RF00030.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_RNase_P.RF01577.fasta.gz non-coding RNAs Predicted Plasmodium RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_RNase_P.RF01577.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_beta_tmRNA.RF01850.fasta.gz non-coding RNAs Predicted beta tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_beta_tmRNA.RF01850.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_cyano_tmRNA.RF01851.fasta.gz non-coding RNAs Predicted cyano tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_cyano_tmRNA.RF01851.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_mt-tmRNA.RF02544.fasta.gz non-coding RNAs Predicted mt-tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_mt-tmRNA.RF02544.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_tRNA-Sec.RF01852.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_tRNA.RF00005.fasta.gz 5.0 assembly +MGYA00583595 ERZ1758448_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583595/file/ERZ1758448_tmRNA.RF00023.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_Archaea_SRP.RF01857.fasta.gz non-coding RNAs Predicted Archaea SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_Archaea_SRP.RF01857.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_FASTA.fasta.gz Sequence data Processed contigs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_GO.csv 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_GO_slim.csv 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_InterPro.csv 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_InterPro.tsv.gz 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_LSU.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_LSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_LSU_OTU.tsv 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_LSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_LSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_SSU.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_SSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_SSU_OTU.tsv 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_SSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_SSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_annotations.gff.bgz Functional analysis Combined (eggNOG, InterPro, antiSMASH) annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_annotations.gff.bgz 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_diamond.tsv.gz Functional analysis Diamond annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_diamond.tsv.gz 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_emapper.annotations.tsv.gz Functional analysis eggNOG annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_emapper.annotations.tsv.gz 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_emapper.seed_orthologs.tsv.gz Functional analysis eggNOG seed orthologs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_emapper.seed_orthologs.tsv.gz 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_ko.tsv 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_pfam.tsv 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_predicted_cds.faa.gz 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_predicted_orf.ffn.gz 5.0 assembly +MGYA00583596 ERZ1758447_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_alpha_tmRNA.RF01849.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_Bacteria_large_SRP.RF01854.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_Bacteria_small_SRP.RF00169.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_Dictyostelium_SRP.RF01570.fasta.gz non-coding RNAs Predicted Dictyostelium SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_Dictyostelium_SRP.RF01570.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_antismash.embl.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_antismash.embl.gz 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_antismash.gbk.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_antismash.gbk.gz 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_antismash.gff.bgz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_antismash.gff.bgz 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_antismash_summary.csv Pathways and Systems antiSMASH summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_antismash_summary.csv 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_gp.csv Pathways and Systems Genome Properties annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_gp.csv 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_kegg_pathways.csv Pathways and Systems KEGG pathway annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_kegg_pathways.csv 5.0 assembly +MGYA00583596 ERZ1758447_Fungi_SRP.RF01502.fasta.gz non-coding RNAs Predicted Fungi SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_Fungi_SRP.RF01502.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_Metazoa_SRP.RF00017.fasta.gz non-coding RNAs Predicted Metazoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_Metazoa_SRP.RF00017.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_Plant_SRP.RF01855.fasta.gz non-coding RNAs Predicted Plant SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_Plant_SRP.RF01855.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_Protozoa_SRP.RF01856.fasta.gz non-coding RNAs Predicted Protozoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_Protozoa_SRP.RF01856.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_RNaseP_arch.RF00373.fasta.gz non-coding RNAs Predicted Archaeal RNase P RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_RNaseP_arch.RF00373.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_RNaseP_bact_a.RF00010.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_RNaseP_bact_b.RF00011.fasta.gz non-coding RNAs Predicted Bacterial RNase P class B RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_RNaseP_bact_b.RF00011.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_RNaseP_nuc.RF00009.fasta.gz non-coding RNAs Predicted Nuclear RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_RNaseP_nuc.RF00009.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_RNase_MRP.RF00030.fasta.gz non-coding RNAs Predicted RNase MRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_RNase_MRP.RF00030.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_RNase_P.RF01577.fasta.gz non-coding RNAs Predicted Plasmodium RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_RNase_P.RF01577.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_beta_tmRNA.RF01850.fasta.gz non-coding RNAs Predicted beta tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_beta_tmRNA.RF01850.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_cyano_tmRNA.RF01851.fasta.gz non-coding RNAs Predicted cyano tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_cyano_tmRNA.RF01851.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_mt-tmRNA.RF02544.fasta.gz non-coding RNAs Predicted mt-tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_mt-tmRNA.RF02544.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_tRNA-Sec.RF01852.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_tRNA.RF00005.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_tmRNA.RF00023.fasta.gz 5.0 assembly +MGYA00583596 ERZ1758447_FASTA_kegg_pathways_contigs.tsv Pathways and Systems KEGG pathway annotation (contig) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583596/file/ERZ1758447_FASTA_kegg_pathways_contigs.tsv 5.0 assembly +MGYA00583597 ERZ1758445_Archaea_SRP.RF01857.fasta.gz non-coding RNAs Predicted Archaea SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_Archaea_SRP.RF01857.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_FASTA.fasta.gz Sequence data Processed contigs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_GO.csv 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_GO_slim.csv 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_InterPro.csv 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_InterPro.tsv.gz 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_LSU.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_LSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_LSU_OTU.tsv 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_LSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_LSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_SSU.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_SSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_SSU_OTU.tsv 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_SSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_SSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_annotations.gff.bgz Functional analysis Combined (eggNOG, InterPro, antiSMASH) annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_annotations.gff.bgz 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_diamond.tsv.gz Functional analysis Diamond annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_diamond.tsv.gz 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_emapper.annotations.tsv.gz Functional analysis eggNOG annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_emapper.annotations.tsv.gz 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_emapper.seed_orthologs.tsv.gz Functional analysis eggNOG seed orthologs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_emapper.seed_orthologs.tsv.gz 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_ko.tsv 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_pfam.tsv 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_predicted_cds.faa.gz 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_predicted_orf.ffn.gz 5.0 assembly +MGYA00583597 ERZ1758445_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_alpha_tmRNA.RF01849.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_Bacteria_large_SRP.RF01854.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_Bacteria_small_SRP.RF00169.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_Dictyostelium_SRP.RF01570.fasta.gz non-coding RNAs Predicted Dictyostelium SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_Dictyostelium_SRP.RF01570.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_antismash.embl.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_antismash.embl.gz 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_antismash.gbk.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_antismash.gbk.gz 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_antismash.gff.bgz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_antismash.gff.bgz 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_antismash_summary.csv Pathways and Systems antiSMASH summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_antismash_summary.csv 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_gp.csv Pathways and Systems Genome Properties annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_gp.csv 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_kegg_pathways.csv Pathways and Systems KEGG pathway annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_kegg_pathways.csv 5.0 assembly +MGYA00583597 ERZ1758445_Fungi_SRP.RF01502.fasta.gz non-coding RNAs Predicted Fungi SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_Fungi_SRP.RF01502.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_Metazoa_SRP.RF00017.fasta.gz non-coding RNAs Predicted Metazoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_Metazoa_SRP.RF00017.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_Plant_SRP.RF01855.fasta.gz non-coding RNAs Predicted Plant SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_Plant_SRP.RF01855.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_Protozoa_SRP.RF01856.fasta.gz non-coding RNAs Predicted Protozoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_Protozoa_SRP.RF01856.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_RNaseP_arch.RF00373.fasta.gz non-coding RNAs Predicted Archaeal RNase P RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_RNaseP_arch.RF00373.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_RNaseP_bact_a.RF00010.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_RNaseP_bact_b.RF00011.fasta.gz non-coding RNAs Predicted Bacterial RNase P class B RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_RNaseP_bact_b.RF00011.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_RNaseP_nuc.RF00009.fasta.gz non-coding RNAs Predicted Nuclear RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_RNaseP_nuc.RF00009.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_RNase_MRP.RF00030.fasta.gz non-coding RNAs Predicted RNase MRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_RNase_MRP.RF00030.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_RNase_P.RF01577.fasta.gz non-coding RNAs Predicted Plasmodium RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_RNase_P.RF01577.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_beta_tmRNA.RF01850.fasta.gz non-coding RNAs Predicted beta tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_beta_tmRNA.RF01850.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_cyano_tmRNA.RF01851.fasta.gz non-coding RNAs Predicted cyano tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_cyano_tmRNA.RF01851.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_mt-tmRNA.RF02544.fasta.gz non-coding RNAs Predicted mt-tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_mt-tmRNA.RF02544.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_tRNA-Sec.RF01852.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_tRNA.RF00005.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_tmRNA.RF00023.fasta.gz 5.0 assembly +MGYA00583597 ERZ1758445_FASTA_kegg_pathways_contigs.tsv Pathways and Systems KEGG pathway annotation (contig) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583597/file/ERZ1758445_FASTA_kegg_pathways_contigs.tsv 5.0 assembly +MGYA00583598 ERZ1758438_Archaea_SRP.RF01857.fasta.gz non-coding RNAs Predicted Archaea SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_Archaea_SRP.RF01857.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_FASTA.fasta.gz Sequence data Processed contigs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_GO.csv 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_GO_slim.csv 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_InterPro.csv 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_InterPro.tsv.gz 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_LSU.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_LSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_LSU_OTU.tsv 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_LSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_LSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_SSU.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_SSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_SSU_OTU.tsv 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_SSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_SSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_annotations.gff.bgz Functional analysis Combined (eggNOG, InterPro, antiSMASH) annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_annotations.gff.bgz 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_diamond.tsv.gz Functional analysis Diamond annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_diamond.tsv.gz 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_emapper.annotations.tsv.gz Functional analysis eggNOG annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_emapper.annotations.tsv.gz 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_emapper.seed_orthologs.tsv.gz Functional analysis eggNOG seed orthologs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_emapper.seed_orthologs.tsv.gz 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_ko.tsv 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_pfam.tsv 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_predicted_cds.faa.gz 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_predicted_orf.ffn.gz 5.0 assembly +MGYA00583598 ERZ1758438_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_alpha_tmRNA.RF01849.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_Bacteria_large_SRP.RF01854.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_Bacteria_small_SRP.RF00169.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_Dictyostelium_SRP.RF01570.fasta.gz non-coding RNAs Predicted Dictyostelium SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_Dictyostelium_SRP.RF01570.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_antismash.embl.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_antismash.embl.gz 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_antismash.gbk.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_antismash.gbk.gz 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_antismash.gff.bgz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_antismash.gff.bgz 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_antismash_summary.csv Pathways and Systems antiSMASH summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_antismash_summary.csv 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_gp.csv Pathways and Systems Genome Properties annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_gp.csv 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_kegg_pathways.csv Pathways and Systems KEGG pathway annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_kegg_pathways.csv 5.0 assembly +MGYA00583598 ERZ1758438_FASTA_kegg_pathways_contigs.tsv Pathways and Systems KEGG pathway annotation (contig) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_FASTA_kegg_pathways_contigs.tsv 5.0 assembly +MGYA00583598 ERZ1758438_Metazoa_SRP.RF00017.fasta.gz non-coding RNAs Predicted Metazoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_Metazoa_SRP.RF00017.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_Plant_SRP.RF01855.fasta.gz non-coding RNAs Predicted Plant SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_Plant_SRP.RF01855.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_Protozoa_SRP.RF01856.fasta.gz non-coding RNAs Predicted Protozoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_Protozoa_SRP.RF01856.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_RNaseP_arch.RF00373.fasta.gz non-coding RNAs Predicted Archaeal RNase P RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_RNaseP_arch.RF00373.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_RNaseP_bact_a.RF00010.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_RNaseP_bact_b.RF00011.fasta.gz non-coding RNAs Predicted Bacterial RNase P class B RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_RNaseP_bact_b.RF00011.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_RNase_MRP.RF00030.fasta.gz non-coding RNAs Predicted RNase MRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_RNase_MRP.RF00030.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_RNase_P.RF01577.fasta.gz non-coding RNAs Predicted Plasmodium RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_RNase_P.RF01577.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_beta_tmRNA.RF01850.fasta.gz non-coding RNAs Predicted beta tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_beta_tmRNA.RF01850.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_cyano_tmRNA.RF01851.fasta.gz non-coding RNAs Predicted cyano tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_cyano_tmRNA.RF01851.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_mt-tmRNA.RF02544.fasta.gz non-coding RNAs Predicted mt-tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_mt-tmRNA.RF02544.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_tRNA-Sec.RF01852.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_tRNA.RF00005.fasta.gz 5.0 assembly +MGYA00583598 ERZ1758438_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583598/file/ERZ1758438_tmRNA.RF00023.fasta.gz 5.0 assembly +MGYA00583599 ERZ1758442_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_Bacteria_small_SRP.RF00169.fasta.gz 5.0 assembly +MGYA00583599 ERZ1758442_FASTA.fasta.gz Sequence data Processed contigs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA.fasta.gz 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_GO.csv 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_GO_slim.csv 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_InterPro.csv 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_InterPro.tsv.gz 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_LSU.fasta.gz 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_LSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_LSU_OTU.tsv 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_LSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_LSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_SSU.fasta.gz 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_SSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_SSU_OTU.tsv 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_SSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_SSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_annotations.gff.bgz Functional analysis Combined (eggNOG, InterPro, antiSMASH) annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_annotations.gff.bgz 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_diamond.tsv.gz Functional analysis Diamond annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_diamond.tsv.gz 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_emapper.annotations.tsv.gz Functional analysis eggNOG annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_emapper.annotations.tsv.gz 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_emapper.seed_orthologs.tsv.gz Functional analysis eggNOG seed orthologs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_emapper.seed_orthologs.tsv.gz 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_ko.tsv 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_pfam.tsv 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_predicted_cds.faa.gz 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_predicted_orf.ffn.gz 5.0 assembly +MGYA00583599 ERZ1758442_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_alpha_tmRNA.RF01849.fasta.gz 5.0 assembly +MGYA00583599 ERZ1758442_Dictyostelium_SRP.RF01570.fasta.gz non-coding RNAs Predicted Dictyostelium SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_Dictyostelium_SRP.RF01570.fasta.gz 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_antismash.embl.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_antismash.embl.gz 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_antismash.gbk.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_antismash.gbk.gz 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_antismash.gff.bgz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_antismash.gff.bgz 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_antismash_summary.csv Pathways and Systems antiSMASH summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_antismash_summary.csv 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_gp.csv Pathways and Systems Genome Properties annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_gp.csv 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_kegg_pathways.csv Pathways and Systems KEGG pathway annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_kegg_pathways.csv 5.0 assembly +MGYA00583599 ERZ1758442_FASTA_kegg_pathways_contigs.tsv Pathways and Systems KEGG pathway annotation (contig) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_FASTA_kegg_pathways_contigs.tsv 5.0 assembly +MGYA00583599 ERZ1758442_Fungi_SRP.RF01502.fasta.gz non-coding RNAs Predicted Fungi SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_Fungi_SRP.RF01502.fasta.gz 5.0 assembly +MGYA00583599 ERZ1758442_Metazoa_SRP.RF00017.fasta.gz non-coding RNAs Predicted Metazoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_Metazoa_SRP.RF00017.fasta.gz 5.0 assembly +MGYA00583599 ERZ1758442_Plant_SRP.RF01855.fasta.gz non-coding RNAs Predicted Plant SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_Plant_SRP.RF01855.fasta.gz 5.0 assembly +MGYA00583599 ERZ1758442_RNaseP_arch.RF00373.fasta.gz non-coding RNAs Predicted Archaeal RNase P RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_RNaseP_arch.RF00373.fasta.gz 5.0 assembly +MGYA00583599 ERZ1758442_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_RNaseP_bact_a.RF00010.fasta.gz 5.0 assembly +MGYA00583599 ERZ1758442_RNase_P.RF01577.fasta.gz non-coding RNAs Predicted Plasmodium RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_RNase_P.RF01577.fasta.gz 5.0 assembly +MGYA00583599 ERZ1758442_beta_tmRNA.RF01850.fasta.gz non-coding RNAs Predicted beta tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_beta_tmRNA.RF01850.fasta.gz 5.0 assembly +MGYA00583599 ERZ1758442_cyano_tmRNA.RF01851.fasta.gz non-coding RNAs Predicted cyano tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_cyano_tmRNA.RF01851.fasta.gz 5.0 assembly +MGYA00583599 ERZ1758442_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_tRNA-Sec.RF01852.fasta.gz 5.0 assembly +MGYA00583599 ERZ1758442_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_tRNA.RF00005.fasta.gz 5.0 assembly +MGYA00583599 ERZ1758442_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583599/file/ERZ1758442_tmRNA.RF00023.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_Archaea_SRP.RF01857.fasta.gz non-coding RNAs Predicted Archaea SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_Archaea_SRP.RF01857.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_FASTA.fasta.gz Sequence data Processed contigs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_GO.csv 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_GO_slim.csv 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_InterPro.csv 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_InterPro.tsv.gz 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_LSU.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_LSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_LSU_OTU.tsv 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_LSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_LSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_SSU.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_SSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_SSU_OTU.tsv 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_SSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_SSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_annotations.gff.bgz Functional analysis Combined (eggNOG, InterPro, antiSMASH) annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_annotations.gff.bgz 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_diamond.tsv.gz Functional analysis Diamond annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_diamond.tsv.gz 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_emapper.annotations.tsv.gz Functional analysis eggNOG annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_emapper.annotations.tsv.gz 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_emapper.seed_orthologs.tsv.gz Functional analysis eggNOG seed orthologs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_emapper.seed_orthologs.tsv.gz 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_ko.tsv 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_pfam.tsv 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_predicted_cds.faa.gz 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_predicted_orf.ffn.gz 5.0 assembly +MGYA00583600 ERZ1758439_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_alpha_tmRNA.RF01849.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_Bacteria_large_SRP.RF01854.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_Bacteria_small_SRP.RF00169.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_Dictyostelium_SRP.RF01570.fasta.gz non-coding RNAs Predicted Dictyostelium SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_Dictyostelium_SRP.RF01570.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_antismash.embl.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_antismash.embl.gz 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_antismash.gbk.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_antismash.gbk.gz 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_antismash.gff.bgz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_antismash.gff.bgz 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_antismash_summary.csv Pathways and Systems antiSMASH summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_antismash_summary.csv 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_gp.csv Pathways and Systems Genome Properties annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_gp.csv 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_kegg_pathways.csv Pathways and Systems KEGG pathway annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_kegg_pathways.csv 5.0 assembly +MGYA00583600 ERZ1758439_FASTA_kegg_pathways_contigs.tsv Pathways and Systems KEGG pathway annotation (contig) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_FASTA_kegg_pathways_contigs.tsv 5.0 assembly +MGYA00583600 ERZ1758439_Metazoa_SRP.RF00017.fasta.gz non-coding RNAs Predicted Metazoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_Metazoa_SRP.RF00017.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_Plant_SRP.RF01855.fasta.gz non-coding RNAs Predicted Plant SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_Plant_SRP.RF01855.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_Protozoa_SRP.RF01856.fasta.gz non-coding RNAs Predicted Protozoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_Protozoa_SRP.RF01856.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_RNaseP_arch.RF00373.fasta.gz non-coding RNAs Predicted Archaeal RNase P RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_RNaseP_arch.RF00373.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_RNaseP_bact_a.RF00010.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_RNaseP_bact_b.RF00011.fasta.gz non-coding RNAs Predicted Bacterial RNase P class B RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_RNaseP_bact_b.RF00011.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_RNase_MRP.RF00030.fasta.gz non-coding RNAs Predicted RNase MRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_RNase_MRP.RF00030.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_RNase_P.RF01577.fasta.gz non-coding RNAs Predicted Plasmodium RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_RNase_P.RF01577.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_beta_tmRNA.RF01850.fasta.gz non-coding RNAs Predicted beta tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_beta_tmRNA.RF01850.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_cyano_tmRNA.RF01851.fasta.gz non-coding RNAs Predicted cyano tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_cyano_tmRNA.RF01851.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_tRNA-Sec.RF01852.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_tRNA.RF00005.fasta.gz 5.0 assembly +MGYA00583600 ERZ1758439_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583600/file/ERZ1758439_tmRNA.RF00023.fasta.gz 5.0 assembly +MGYA00583601 ERZ1758437_Archaea_SRP.RF01857.fasta.gz non-coding RNAs Predicted Archaea SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_Archaea_SRP.RF01857.fasta.gz 5.0 assembly +MGYA00583601 ERZ1758437_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_Bacteria_small_SRP.RF00169.fasta.gz 5.0 assembly +MGYA00583601 ERZ1758437_FASTA.fasta.gz Sequence data Processed contigs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA.fasta.gz 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_GO.csv 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_GO_slim.csv 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_InterPro.csv 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_InterPro.tsv.gz 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_LSU.fasta.gz 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_LSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_LSU_OTU.tsv 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_LSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_LSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_SSU.fasta.gz 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_SSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_SSU_OTU.tsv 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_SSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_SSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_annotations.gff.bgz Functional analysis Combined (eggNOG, InterPro, antiSMASH) annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_annotations.gff.bgz 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_diamond.tsv.gz Functional analysis Diamond annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_diamond.tsv.gz 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_emapper.annotations.tsv.gz Functional analysis eggNOG annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_emapper.annotations.tsv.gz 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_emapper.seed_orthologs.tsv.gz Functional analysis eggNOG seed orthologs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_emapper.seed_orthologs.tsv.gz 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_ko.tsv 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_pfam.tsv 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_predicted_cds.faa.gz 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_predicted_orf.ffn.gz 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_antismash.embl.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_antismash.embl.gz 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_antismash.gbk.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_antismash.gbk.gz 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_antismash.gff.bgz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_antismash.gff.bgz 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_antismash_summary.csv Pathways and Systems antiSMASH summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_antismash_summary.csv 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_gp.csv Pathways and Systems Genome Properties annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_gp.csv 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_kegg_pathways.csv Pathways and Systems KEGG pathway annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_kegg_pathways.csv 5.0 assembly +MGYA00583601 ERZ1758437_FASTA_kegg_pathways_contigs.tsv Pathways and Systems KEGG pathway annotation (contig) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_FASTA_kegg_pathways_contigs.tsv 5.0 assembly +MGYA00583601 ERZ1758437_Metazoa_SRP.RF00017.fasta.gz non-coding RNAs Predicted Metazoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_Metazoa_SRP.RF00017.fasta.gz 5.0 assembly +MGYA00583601 ERZ1758437_Plant_SRP.RF01855.fasta.gz non-coding RNAs Predicted Plant SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_Plant_SRP.RF01855.fasta.gz 5.0 assembly +MGYA00583601 ERZ1758437_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_RNaseP_bact_a.RF00010.fasta.gz 5.0 assembly +MGYA00583601 ERZ1758437_RNase_P.RF01577.fasta.gz non-coding RNAs Predicted Plasmodium RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_RNase_P.RF01577.fasta.gz 5.0 assembly +MGYA00583601 ERZ1758437_cyano_tmRNA.RF01851.fasta.gz non-coding RNAs Predicted cyano tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_cyano_tmRNA.RF01851.fasta.gz 5.0 assembly +MGYA00583601 ERZ1758437_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_tRNA-Sec.RF01852.fasta.gz 5.0 assembly +MGYA00583601 ERZ1758437_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_tRNA.RF00005.fasta.gz 5.0 assembly +MGYA00583601 ERZ1758437_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583601/file/ERZ1758437_tmRNA.RF00023.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_Archaea_SRP.RF01857.fasta.gz non-coding RNAs Predicted Archaea SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_Archaea_SRP.RF01857.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_FASTA.fasta.gz Sequence data Processed contigs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_GO.csv 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_GO_slim.csv 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_InterPro.csv 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_InterPro.tsv.gz 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_LSU.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_LSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_LSU_OTU.tsv 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_LSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_LSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_SSU.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_SSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_SSU_OTU.tsv 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_SSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_SSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_annotations.gff.bgz Functional analysis Combined (eggNOG, InterPro, antiSMASH) annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_annotations.gff.bgz 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_diamond.tsv.gz Functional analysis Diamond annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_diamond.tsv.gz 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_emapper.annotations.tsv.gz Functional analysis eggNOG annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_emapper.annotations.tsv.gz 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_emapper.seed_orthologs.tsv.gz Functional analysis eggNOG seed orthologs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_emapper.seed_orthologs.tsv.gz 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_ko.tsv 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_pfam.tsv 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_predicted_cds.faa.gz 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_predicted_orf.ffn.gz 5.0 assembly +MGYA00583602 ERZ1758449_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_alpha_tmRNA.RF01849.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_Bacteria_large_SRP.RF01854.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_Bacteria_small_SRP.RF00169.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_Dictyostelium_SRP.RF01570.fasta.gz non-coding RNAs Predicted Dictyostelium SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_Dictyostelium_SRP.RF01570.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_antismash.embl.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_antismash.embl.gz 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_antismash.gbk.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_antismash.gbk.gz 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_antismash.gff.bgz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_antismash.gff.bgz 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_antismash_summary.csv Pathways and Systems antiSMASH summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_antismash_summary.csv 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_gp.csv Pathways and Systems Genome Properties annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_gp.csv 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_kegg_pathways.csv Pathways and Systems KEGG pathway annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_kegg_pathways.csv 5.0 assembly +MGYA00583602 ERZ1758449_FASTA_kegg_pathways_contigs.tsv Pathways and Systems KEGG pathway annotation (contig) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_FASTA_kegg_pathways_contigs.tsv 5.0 assembly +MGYA00583602 ERZ1758449_Fungi_SRP.RF01502.fasta.gz non-coding RNAs Predicted Fungi SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_Fungi_SRP.RF01502.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_Metazoa_SRP.RF00017.fasta.gz non-coding RNAs Predicted Metazoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_Metazoa_SRP.RF00017.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_Plant_SRP.RF01855.fasta.gz non-coding RNAs Predicted Plant SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_Plant_SRP.RF01855.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_Protozoa_SRP.RF01856.fasta.gz non-coding RNAs Predicted Protozoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_Protozoa_SRP.RF01856.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_RNaseP_arch.RF00373.fasta.gz non-coding RNAs Predicted Archaeal RNase P RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_RNaseP_arch.RF00373.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_RNaseP_bact_a.RF00010.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_RNaseP_bact_b.RF00011.fasta.gz non-coding RNAs Predicted Bacterial RNase P class B RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_RNaseP_bact_b.RF00011.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_RNaseP_nuc.RF00009.fasta.gz non-coding RNAs Predicted Nuclear RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_RNaseP_nuc.RF00009.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_RNase_P.RF01577.fasta.gz non-coding RNAs Predicted Plasmodium RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_RNase_P.RF01577.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_beta_tmRNA.RF01850.fasta.gz non-coding RNAs Predicted beta tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_beta_tmRNA.RF01850.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_cyano_tmRNA.RF01851.fasta.gz non-coding RNAs Predicted cyano tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_cyano_tmRNA.RF01851.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_mt-tmRNA.RF02544.fasta.gz non-coding RNAs Predicted mt-tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_mt-tmRNA.RF02544.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_tRNA-Sec.RF01852.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_tRNA.RF00005.fasta.gz 5.0 assembly +MGYA00583602 ERZ1758449_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583602/file/ERZ1758449_tmRNA.RF00023.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_Archaea_SRP.RF01857.fasta.gz non-coding RNAs Predicted Archaea SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_Archaea_SRP.RF01857.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_FASTA.fasta.gz Sequence data Processed contigs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_GO.csv 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_GO_slim.csv 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_InterPro.csv 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_InterPro.tsv.gz 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_LSU.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_LSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_LSU_OTU.tsv 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_LSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_LSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_SSU.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_SSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_SSU_OTU.tsv 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_SSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_SSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_annotations.gff.bgz Functional analysis Combined (eggNOG, InterPro, antiSMASH) annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_annotations.gff.bgz 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_diamond.tsv.gz Functional analysis Diamond annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_diamond.tsv.gz 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_emapper.annotations.tsv.gz Functional analysis eggNOG annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_emapper.annotations.tsv.gz 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_emapper.seed_orthologs.tsv.gz Functional analysis eggNOG seed orthologs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_emapper.seed_orthologs.tsv.gz 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_ko.tsv 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_pfam.tsv 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_predicted_cds.faa.gz 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_predicted_orf.ffn.gz 5.0 assembly +MGYA00583603 ERZ1758444_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_alpha_tmRNA.RF01849.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_Bacteria_large_SRP.RF01854.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_Bacteria_small_SRP.RF00169.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_Dictyostelium_SRP.RF01570.fasta.gz non-coding RNAs Predicted Dictyostelium SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_Dictyostelium_SRP.RF01570.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_antismash.embl.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_antismash.embl.gz 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_antismash.gbk.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_antismash.gbk.gz 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_antismash.gff.bgz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_antismash.gff.bgz 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_antismash_summary.csv Pathways and Systems antiSMASH summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_antismash_summary.csv 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_gp.csv Pathways and Systems Genome Properties annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_gp.csv 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_kegg_pathways.csv Pathways and Systems KEGG pathway annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_kegg_pathways.csv 5.0 assembly +MGYA00583603 ERZ1758444_FASTA_kegg_pathways_contigs.tsv Pathways and Systems KEGG pathway annotation (contig) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_FASTA_kegg_pathways_contigs.tsv 5.0 assembly +MGYA00583603 ERZ1758444_Fungi_SRP.RF01502.fasta.gz non-coding RNAs Predicted Fungi SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_Fungi_SRP.RF01502.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_Metazoa_SRP.RF00017.fasta.gz non-coding RNAs Predicted Metazoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_Metazoa_SRP.RF00017.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_Plant_SRP.RF01855.fasta.gz non-coding RNAs Predicted Plant SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_Plant_SRP.RF01855.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_Protozoa_SRP.RF01856.fasta.gz non-coding RNAs Predicted Protozoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_Protozoa_SRP.RF01856.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_RNaseP_arch.RF00373.fasta.gz non-coding RNAs Predicted Archaeal RNase P RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_RNaseP_arch.RF00373.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_RNaseP_bact_a.RF00010.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_RNaseP_bact_b.RF00011.fasta.gz non-coding RNAs Predicted Bacterial RNase P class B RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_RNaseP_bact_b.RF00011.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_RNaseP_nuc.RF00009.fasta.gz non-coding RNAs Predicted Nuclear RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_RNaseP_nuc.RF00009.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_RNase_P.RF01577.fasta.gz non-coding RNAs Predicted Plasmodium RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_RNase_P.RF01577.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_beta_tmRNA.RF01850.fasta.gz non-coding RNAs Predicted beta tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_beta_tmRNA.RF01850.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_cyano_tmRNA.RF01851.fasta.gz non-coding RNAs Predicted cyano tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_cyano_tmRNA.RF01851.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_mt-tmRNA.RF02544.fasta.gz non-coding RNAs Predicted mt-tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_mt-tmRNA.RF02544.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_tRNA-Sec.RF01852.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_tRNA.RF00005.fasta.gz 5.0 assembly +MGYA00583603 ERZ1758444_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583603/file/ERZ1758444_tmRNA.RF00023.fasta.gz 5.0 assembly +MGYA00583604 ERZ1758441_Archaea_SRP.RF01857.fasta.gz non-coding RNAs Predicted Archaea SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_Archaea_SRP.RF01857.fasta.gz 5.0 assembly +MGYA00583604 ERZ1758441_FASTA.fasta.gz Sequence data Processed contigs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA.fasta.gz 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_GO.csv 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_GO_slim.csv 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_InterPro.csv 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_InterPro.tsv.gz 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_LSU.fasta.gz 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_LSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_LSU_OTU.tsv 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_LSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_LSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_SSU.fasta.gz 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_SSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_SSU_OTU.tsv 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_SSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_SSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_annotations.gff.bgz Functional analysis Combined (eggNOG, InterPro, antiSMASH) annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_annotations.gff.bgz 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_diamond.tsv.gz Functional analysis Diamond annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_diamond.tsv.gz 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_emapper.annotations.tsv.gz Functional analysis eggNOG annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_emapper.annotations.tsv.gz 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_emapper.seed_orthologs.tsv.gz Functional analysis eggNOG seed orthologs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_emapper.seed_orthologs.tsv.gz 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_ko.tsv 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_pfam.tsv 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_predicted_cds.faa.gz 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_predicted_orf.ffn.gz 5.0 assembly +MGYA00583604 ERZ1758441_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_alpha_tmRNA.RF01849.fasta.gz 5.0 assembly +MGYA00583604 ERZ1758441_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_Bacteria_small_SRP.RF00169.fasta.gz 5.0 assembly +MGYA00583604 ERZ1758441_Dictyostelium_SRP.RF01570.fasta.gz non-coding RNAs Predicted Dictyostelium SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_Dictyostelium_SRP.RF01570.fasta.gz 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_antismash.embl.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_antismash.embl.gz 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_antismash.gbk.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_antismash.gbk.gz 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_antismash.gff.bgz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_antismash.gff.bgz 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_antismash_summary.csv Pathways and Systems antiSMASH summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_antismash_summary.csv 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_gp.csv Pathways and Systems Genome Properties annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_gp.csv 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_kegg_pathways.csv Pathways and Systems KEGG pathway annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_kegg_pathways.csv 5.0 assembly +MGYA00583604 ERZ1758441_FASTA_kegg_pathways_contigs.tsv Pathways and Systems KEGG pathway annotation (contig) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_FASTA_kegg_pathways_contigs.tsv 5.0 assembly +MGYA00583604 ERZ1758441_Metazoa_SRP.RF00017.fasta.gz non-coding RNAs Predicted Metazoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_Metazoa_SRP.RF00017.fasta.gz 5.0 assembly +MGYA00583604 ERZ1758441_Plant_SRP.RF01855.fasta.gz non-coding RNAs Predicted Plant SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_Plant_SRP.RF01855.fasta.gz 5.0 assembly +MGYA00583604 ERZ1758441_Protozoa_SRP.RF01856.fasta.gz non-coding RNAs Predicted Protozoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_Protozoa_SRP.RF01856.fasta.gz 5.0 assembly +MGYA00583604 ERZ1758441_RNaseP_arch.RF00373.fasta.gz non-coding RNAs Predicted Archaeal RNase P RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_RNaseP_arch.RF00373.fasta.gz 5.0 assembly +MGYA00583604 ERZ1758441_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_RNaseP_bact_a.RF00010.fasta.gz 5.0 assembly +MGYA00583604 ERZ1758441_RNase_P.RF01577.fasta.gz non-coding RNAs Predicted Plasmodium RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_RNase_P.RF01577.fasta.gz 5.0 assembly +MGYA00583604 ERZ1758441_beta_tmRNA.RF01850.fasta.gz non-coding RNAs Predicted beta tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_beta_tmRNA.RF01850.fasta.gz 5.0 assembly +MGYA00583604 ERZ1758441_cyano_tmRNA.RF01851.fasta.gz non-coding RNAs Predicted cyano tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_cyano_tmRNA.RF01851.fasta.gz 5.0 assembly +MGYA00583604 ERZ1758441_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_tRNA-Sec.RF01852.fasta.gz 5.0 assembly +MGYA00583604 ERZ1758441_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_tRNA.RF00005.fasta.gz 5.0 assembly +MGYA00583604 ERZ1758441_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583604/file/ERZ1758441_tmRNA.RF00023.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_Archaea_SRP.RF01857.fasta.gz non-coding RNAs Predicted Archaea SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_Archaea_SRP.RF01857.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_FASTA.fasta.gz Sequence data Processed contigs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_GO.csv 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_GO_slim.csv 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_InterPro.csv Functional analysis InterPro summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_InterPro.csv 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_InterPro.tsv.gz 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_LSU.fasta.gz Taxonomic analysis LSU rRNA Contigs encoding LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_LSU.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_LSU_MAPSeq.mseq.gz Taxonomic analysis LSU rRNA MAPseq LSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_LSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_LSU_OTU.tsv Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_LSU_OTU.tsv 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_LSU_OTU_TABLE_HDF5.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_LSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_LSU_OTU_TABLE_JSON.biom Taxonomic analysis LSU rRNA OTUs, counts and taxonomic assignments for LSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_LSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_SSU.fasta.gz Taxonomic analysis SSU rRNA Contigs encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_SSU.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_SSU_MAPSeq.mseq.gz 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_SSU_OTU.tsv 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_SSU_OTU_TABLE_HDF5.biom 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_SSU_OTU_TABLE_JSON.biom 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_annotations.gff.bgz Functional analysis Combined (eggNOG, InterPro, antiSMASH) annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_annotations.gff.bgz 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_diamond.tsv.gz Functional analysis Diamond annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_diamond.tsv.gz 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_emapper.annotations.tsv.gz Functional analysis eggNOG annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_emapper.annotations.tsv.gz 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_emapper.seed_orthologs.tsv.gz Functional analysis eggNOG seed orthologs https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_emapper.seed_orthologs.tsv.gz 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_ko.tsv Functional analysis KEGG orthologues annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_ko.tsv 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_pfam.tsv Functional analysis Pfam annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_pfam.tsv 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_predicted_cds.faa.gz Sequence data Predicted CDS (aa) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_predicted_cds.faa.gz 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_predicted_orf.ffn.gz Sequence data Predicted ORF (nt) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_predicted_orf.ffn.gz 5.0 assembly +MGYA00583605 ERZ1758440_alpha_tmRNA.RF01849.fasta.gz non-coding RNAs Predicted alpha tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_alpha_tmRNA.RF01849.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_Bacteria_large_SRP.RF01854.fasta.gz non-coding RNAs Predicted Bacteria large SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_Bacteria_large_SRP.RF01854.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_Bacteria_small_SRP.RF00169.fasta.gz non-coding RNAs Predicted Bacteria small SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_Bacteria_small_SRP.RF00169.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_Dictyostelium_SRP.RF01570.fasta.gz non-coding RNAs Predicted Dictyostelium SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_Dictyostelium_SRP.RF01570.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_antismash.embl.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_antismash.embl.gz 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_antismash.gbk.gz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_antismash.gbk.gz 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_antismash.gff.bgz Pathways and Systems antiSMASH annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_antismash.gff.bgz 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_antismash_summary.csv Pathways and Systems antiSMASH summary https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_antismash_summary.csv 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_gp.csv Pathways and Systems Genome Properties annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_gp.csv 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_kegg_pathways.csv Pathways and Systems KEGG pathway annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_kegg_pathways.csv 5.0 assembly +MGYA00583605 ERZ1758440_Fungi_SRP.RF01502.fasta.gz non-coding RNAs Predicted Fungi SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_Fungi_SRP.RF01502.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_Metazoa_SRP.RF00017.fasta.gz non-coding RNAs Predicted Metazoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_Metazoa_SRP.RF00017.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_Plant_SRP.RF01855.fasta.gz non-coding RNAs Predicted Plant SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_Plant_SRP.RF01855.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_Protozoa_SRP.RF01856.fasta.gz non-coding RNAs Predicted Protozoa SRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_Protozoa_SRP.RF01856.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_RNaseP_arch.RF00373.fasta.gz non-coding RNAs Predicted Archaeal RNase P RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_RNaseP_arch.RF00373.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_RNaseP_bact_a.RF00010.fasta.gz non-coding RNAs Predicted Bacterial RNase P class A RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_RNaseP_bact_a.RF00010.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_RNaseP_bact_b.RF00011.fasta.gz non-coding RNAs Predicted Bacterial RNase P class B RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_RNaseP_bact_b.RF00011.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_RNaseP_nuc.RF00009.fasta.gz non-coding RNAs Predicted Nuclear RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_RNaseP_nuc.RF00009.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_RNase_MRP.RF00030.fasta.gz non-coding RNAs Predicted RNase MRP RNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_RNase_MRP.RF00030.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_RNase_P.RF01577.fasta.gz non-coding RNAs Predicted Plasmodium RNase P https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_RNase_P.RF01577.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_beta_tmRNA.RF01850.fasta.gz non-coding RNAs Predicted beta tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_beta_tmRNA.RF01850.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_cyano_tmRNA.RF01851.fasta.gz non-coding RNAs Predicted cyano tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_cyano_tmRNA.RF01851.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_mt-tmRNA.RF02544.fasta.gz non-coding RNAs Predicted mt-tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_mt-tmRNA.RF02544.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_tRNA-Sec.RF01852.fasta.gz non-coding RNAs Predicted tRNA-Sec https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_tRNA-Sec.RF01852.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_tRNA.RF00005.fasta.gz non-coding RNAs Predicted tRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_tRNA.RF00005.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_tmRNA.RF00023.fasta.gz non-coding RNAs Predicted tmRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_tmRNA.RF00023.fasta.gz 5.0 assembly +MGYA00583605 ERZ1758440_FASTA_kegg_pathways_contigs.tsv Pathways and Systems KEGG pathway annotation (contig) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00583605/file/ERZ1758440_FASTA_kegg_pathways_contigs.tsv 5.0 assembly
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_ssu_rrna/MGYS00002098_metadata.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,18 @@ +analysis_id name group_type description download_url pipeline_version experiment_type +MGYA00142142 SRR5252247.SSU_rRNA_bacteria.RF00177.fa non-coding RNAs Predicted Bacterial SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00142142/file/SRR5252247.SSU_rRNA_bacteria.RF00177.fa 4.0 metabarcoding +MGYA00142142 SRR5252247.SSU_rRNA_eukarya.RF01960.fa non-coding RNAs Predicted Eukaryotic SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00142142/file/SRR5252247.SSU_rRNA_eukarya.RF01960.fa 4.0 metabarcoding +MGYA00142142 SRR5252247_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00142142/file/SRR5252247_FASTQ.fasta.gz 4.0 metabarcoding +MGYA00142142 SRR5252247_FASTQ_CDS_annotated.faa.gz Sequence data Predicted CDS with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00142142/file/SRR5252247_FASTQ_CDS_annotated.faa.gz 4.0 metabarcoding +MGYA00142142 SRR5252247_FASTQ_CDS_unannotated.faa.gz Sequence data Predicted CDS without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00142142/file/SRR5252247_FASTQ_CDS_unannotated.faa.gz 4.0 metabarcoding +MGYA00142142 SRR5252247_FASTQ_GO.csv Functional analysis Complete GO annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00142142/file/SRR5252247_FASTQ_GO.csv 4.0 metabarcoding +MGYA00142142 SRR5252247_FASTQ_GO_slim.csv Functional analysis GO slim annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00142142/file/SRR5252247_FASTQ_GO_slim.csv 4.0 metabarcoding +MGYA00142142 SRR5252247_FASTQ_InterPro.tsv.gz Functional analysis InterPro matches https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00142142/file/SRR5252247_FASTQ_InterPro.tsv.gz 4.0 metabarcoding +MGYA00142142 SRR5252247_FASTQ_ORF_unannotated.ffn.gz Sequence data Predicted ORF without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00142142/file/SRR5252247_FASTQ_ORF_unannotated.ffn.gz 4.0 metabarcoding +MGYA00142142 SRR5252247_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00142142/file/SRR5252247_FASTQ_SSU.fasta.gz 4.0 metabarcoding +MGYA00142142 SRR5252247_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00142142/file/SRR5252247_FASTQ_SSU_MAPSeq.mseq.gz 4.0 metabarcoding +MGYA00142142 SRR5252247_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00142142/file/SRR5252247_FASTQ_SSU_OTU.tsv 4.0 metabarcoding +MGYA00142142 SRR5252247_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00142142/file/SRR5252247_FASTQ_SSU_OTU_TABLE_HDF5.biom 4.0 metabarcoding +MGYA00142142 SRR5252247_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00142142/file/SRR5252247_FASTQ_SSU_OTU_TABLE_JSON.biom 4.0 metabarcoding +MGYA00142142 SRR5252247_FASTQ_interproscan.fasta.gz Sequence data Processed reads with annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00142142/file/SRR5252247_FASTQ_interproscan.fasta.gz 4.0 metabarcoding +MGYA00142142 SRR5252247_FASTQ_noFunction.fasta.gz Sequence data Processed reads without annotation https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00142142/file/SRR5252247_FASTQ_noFunction.fasta.gz 4.0 metabarcoding +MGYA00142142 SRR5252247_FASTQ_readsWithpCDS.fasta.gz Sequence data Processed reads with pCDS https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00142142/file/SRR5252247_FASTQ_readsWithpCDS.fasta.gz 4.0 metabarcoding
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_ssu_rrna/SRR5252247_FASTQ_SSU_OTU.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,24 @@ +# Constructed from biom file +# OTU ID SRR5252247 taxonomy +116921 1.0 sk__Bacteria +52560 1.0 sk__Bacteria;k__;p__Acidobacteria;c__Acidobacteriia;o__Acidobacteriales +81598 1.0 sk__Bacteria;k__;p__Actinobacteria;c__Actinobacteria;o__Micrococcales;f__Dermatophilaceae +143201 1.0 sk__Bacteria;k__;p__Firmicutes;c__Bacilli;o__Bacillales;f__Alicyclobacillaceae;g__Alicyclobacillus +140967 1.0 sk__Bacteria;k__;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus +81633 4.0 sk__Bacteria;k__;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus +133838 1.0 sk__Bacteria;k__;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus +137997 1.0 sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Clostridiales +20300 1.0 sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Peptococcaceae;g__Desulfitobacterium +24303 2.0 sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae +124355 1.0 sk__Bacteria;k__;p__Firmicutes;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium +72570 1.0 sk__Bacteria;k__;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Rhizomicrobium +66105 1.0 sk__Bacteria;k__;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales +98400 1.0 sk__Bacteria;k__;p__Proteobacteria;c__Betaproteobacteria +69697 1.0 sk__Bacteria;k__;p__Proteobacteria;c__Gammaproteobacteria +98644 1.0 sk__Bacteria;k__;p__Proteobacteria;c__Gammaproteobacteria;o__;f__;g__Acidibacter +4910 1.0 sk__Bacteria;k__;p__Proteobacteria;c__Gammaproteobacteria;o__Oceanospirillales;f__Halomonadaceae;g__Halomonas +123339 1.0 sk__Bacteria;k__;p__Proteobacteria;c__Gammaproteobacteria;o__Oceanospirillales;f__Oceanospirillaceae;g__Balneatrix +71936 1.0 sk__Bacteria;k__;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae +27248 1.0 sk__Eukaryota;k__Fungi;p__Ascomycota;c__Sordariomycetes;o__Sordariales +27150 1.0 sk__Eukaryota;k__Metazoa;p__Mollusca;c__Bivalvia;o__Veneroida;f__Veneridae;g__Ruditapes;s__Ruditapes_philippinarum +137146 1.0 sk__Eukaryota;k__Viridiplantae;p__Chlorophyta;c__Chlorophyceae
Binary file test-data/taxonomic_analysis_ssu_rrna/SRR5252247_FASTQ_SSU_OTU_TABLE_HDF5.biom has changed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_ssu_rrna/SRR5252247_FASTQ_SSU_OTU_TABLE_JSON.biom Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,1 @@ +{"id": "None","format": "Biological Observation Matrix 1.0.0","format_url": "http://biom-format.org","matrix_type": "sparse","generated_by": "BIOM-Format 2.1.5","date": "2018-01-03T14:04:41.578440","type": "OTU table","matrix_element_type": "float","shape": [22, 1],"data": [[0,0,1.0],[1,0,1.0],[2,0,1.0],[3,0,1.0],[4,0,1.0],[5,0,4.0],[6,0,1.0],[7,0,1.0],[8,0,1.0],[9,0,2.0],[10,0,1.0],[11,0,1.0],[12,0,1.0],[13,0,1.0],[14,0,1.0],[15,0,1.0],[16,0,1.0],[17,0,1.0],[18,0,1.0],[19,0,1.0],[20,0,1.0],[21,0,1.0]],"rows": [{"id": "116921", "metadata": {"taxonomy": "sk__Bacteria"}},{"id": "52560", "metadata": {"taxonomy": "sk__Bacteria;k__;p__Acidobacteria;c__Acidobacteriia;o__Acidobacteriales"}},{"id": "81598", "metadata": {"taxonomy": "sk__Bacteria;k__;p__Actinobacteria;c__Actinobacteria;o__Micrococcales;f__Dermatophilaceae"}},{"id": "143201", "metadata": {"taxonomy": "sk__Bacteria;k__;p__Firmicutes;c__Bacilli;o__Bacillales;f__Alicyclobacillaceae;g__Alicyclobacillus"}},{"id": "140967", "metadata": {"taxonomy": "sk__Bacteria;k__;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus"}},{"id": "81633", "metadata": {"taxonomy": "sk__Bacteria;k__;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus"}},{"id": "133838", "metadata": {"taxonomy": "sk__Bacteria;k__;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus"}},{"id": "137997", "metadata": {"taxonomy": "sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Clostridiales"}},{"id": "20300", "metadata": {"taxonomy": "sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Peptococcaceae;g__Desulfitobacterium"}},{"id": "24303", "metadata": {"taxonomy": "sk__Bacteria;k__;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Ruminococcaceae"}},{"id": "124355", "metadata": {"taxonomy": "sk__Bacteria;k__;p__Firmicutes;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium"}},{"id": "72570", "metadata": {"taxonomy": "sk__Bacteria;k__;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Hyphomicrobiaceae;g__Rhizomicrobium"}},{"id": "66105", "metadata": {"taxonomy": "sk__Bacteria;k__;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales"}},{"id": "98400", "metadata": {"taxonomy": "sk__Bacteria;k__;p__Proteobacteria;c__Betaproteobacteria"}},{"id": "69697", "metadata": {"taxonomy": "sk__Bacteria;k__;p__Proteobacteria;c__Gammaproteobacteria"}},{"id": "98644", "metadata": {"taxonomy": "sk__Bacteria;k__;p__Proteobacteria;c__Gammaproteobacteria;o__;f__;g__Acidibacter"}},{"id": "4910", "metadata": {"taxonomy": "sk__Bacteria;k__;p__Proteobacteria;c__Gammaproteobacteria;o__Oceanospirillales;f__Halomonadaceae;g__Halomonas"}},{"id": "123339", "metadata": {"taxonomy": "sk__Bacteria;k__;p__Proteobacteria;c__Gammaproteobacteria;o__Oceanospirillales;f__Oceanospirillaceae;g__Balneatrix"}},{"id": "71936", "metadata": {"taxonomy": "sk__Bacteria;k__;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae"}},{"id": "27248", "metadata": {"taxonomy": "sk__Eukaryota;k__Fungi;p__Ascomycota;c__Sordariomycetes;o__Sordariales"}},{"id": "27150", "metadata": {"taxonomy": "sk__Eukaryota;k__Metazoa;p__Mollusca;c__Bivalvia;o__Veneroida;f__Veneridae;g__Ruditapes;s__Ruditapes_philippinarum"}},{"id": "137146", "metadata": {"taxonomy": "sk__Eukaryota;k__Viridiplantae;p__Chlorophyta;c__Chlorophyceae"}}],"columns": [{"id": "SRR5252247", "metadata": null}]} \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_unite/ERR169331_FASTQ_ITS_UNITE_OTU.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,15 @@ +# Constructed from biom file +# OTU ID UNITE taxonomy +3 8.0 sk__Eukaryota;k__Alveolata +734 12815.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida +737 4628.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__;g__;s__Tintinnida_sp +749 108.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Codonellopsidae;g__Laackmanniella;s__Laackmanniella_sp +772 7.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Ptychocylididae;g__Cymatocylis;s__Cymatocylis_sp +780 514.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae +782 55.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__;s__Tintinnidae_sp +784 3.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Amphorellopsis;s__Amphorellopsis_sp +785 2.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Amphorides +786 7.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Amphorides;s__Amphorides_sp +788 216.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Eutintinnus;s__Eutintinnus_sp +794 6.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Tintinnidium;s__Tintinnidium_sp +797 6.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidiidae;g__Leprotintinnus;s__Leprotintinnus_sp
Binary file test-data/taxonomic_analysis_unite/ERR169331_FASTQ_ITS_UNITE_OTU_TABLE_HDF5.biom has changed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_unite/ERR169331_FASTQ_ITS_UNITE_OTU_TABLE_JSON.biom Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,1 @@ +{"id": "None","format": "Biological Observation Matrix 1.0.0","format_url": "http://biom-format.org","matrix_type": "sparse","generated_by": "BIOM-Format 2.1.6","date": "2020-11-04T16:06:51.652208","type": "OTU table","matrix_element_type": "float","shape": [13, 1],"data": [[0,0,8.0],[1,0,12815.0],[2,0,4628.0],[3,0,108.0],[4,0,7.0],[5,0,514.0],[6,0,55.0],[7,0,3.0],[8,0,2.0],[9,0,7.0],[10,0,216.0],[11,0,6.0],[12,0,6.0]],"rows": [{"id": "3", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata"}},{"id": "734", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida"}},{"id": "737", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__;g__;s__Tintinnida_sp"}},{"id": "749", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Codonellopsidae;g__Laackmanniella;s__Laackmanniella_sp"}},{"id": "772", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Ptychocylididae;g__Cymatocylis;s__Cymatocylis_sp"}},{"id": "780", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae"}},{"id": "782", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__;s__Tintinnidae_sp"}},{"id": "784", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Amphorellopsis;s__Amphorellopsis_sp"}},{"id": "785", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Amphorides"}},{"id": "786", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Amphorides;s__Amphorides_sp"}},{"id": "788", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Eutintinnus;s__Eutintinnus_sp"}},{"id": "794", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Tintinnidium;s__Tintinnidium_sp"}},{"id": "797", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidiidae;g__Leprotintinnus;s__Leprotintinnus_sp"}}],"columns": [{"id": "UNITE", "metadata": null}]} \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_unite/ERR169333_FASTQ_ITS_UNITE_OTU.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,13 @@ +# Constructed from biom file +# OTU ID UNITE taxonomy +734 15030.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida +737 423.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__;g__;s__Tintinnida_sp +744 3.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Codonellidae;g__Tintinnopsis;s__Tintinnopsis_sp +745 4.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Codonellopsidae +749 3.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Codonellopsidae;g__Laackmanniella;s__Laackmanniella_sp +779 1.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Rhabdonellidae;g__Schmidingerella;s__Schmidingerella_sp +780 92.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae +782 98.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__;s__Tintinnidae_sp +784 1.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Amphorellopsis;s__Amphorellopsis_sp +787 1.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Eutintinnus +788 6.0 sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Eutintinnus;s__Eutintinnus_sp
Binary file test-data/taxonomic_analysis_unite/ERR169333_FASTQ_ITS_UNITE_OTU_TABLE_HDF5.biom has changed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_unite/ERR169333_FASTQ_ITS_UNITE_OTU_TABLE_JSON.biom Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,1 @@ +{"id": "None","format": "Biological Observation Matrix 1.0.0","format_url": "http://biom-format.org","matrix_type": "sparse","generated_by": "BIOM-Format 2.1.6","date": "2020-05-18T08:55:26.706033","type": "OTU table","matrix_element_type": "float","shape": [11, 1],"data": [[0,0,15030.0],[1,0,423.0],[2,0,3.0],[3,0,4.0],[4,0,3.0],[5,0,1.0],[6,0,92.0],[7,0,98.0],[8,0,1.0],[9,0,1.0],[10,0,6.0]],"rows": [{"id": "734", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida"}},{"id": "737", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__;g__;s__Tintinnida_sp"}},{"id": "744", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Codonellidae;g__Tintinnopsis;s__Tintinnopsis_sp"}},{"id": "745", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Codonellopsidae"}},{"id": "749", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Codonellopsidae;g__Laackmanniella;s__Laackmanniella_sp"}},{"id": "779", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Rhabdonellidae;g__Schmidingerella;s__Schmidingerella_sp"}},{"id": "780", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae"}},{"id": "782", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__;s__Tintinnidae_sp"}},{"id": "784", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Amphorellopsis;s__Amphorellopsis_sp"}},{"id": "787", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Eutintinnus"}},{"id": "788", "metadata": {"taxonomy": "sk__Eukaryota;k__Alveolata;p__Ciliophora;c__Spirotrichea;o__Tintinnida;f__Tintinnidae;g__Eutintinnus;s__Eutintinnus_sp"}}],"columns": [{"id": "UNITE", "metadata": null}]} \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/taxonomic_analysis_unite/MGYS00002478_metadata.tsv Tue Jul 30 15:41:16 2024 +0000 @@ -0,0 +1,36 @@ +analysis_id name group_type description download_url pipeline_version experiment_type +MGYA00524152 ERR169333_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ.fasta.gz 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_5.8S.fasta.gz non-coding RNAs Reads encoding 5.8S https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_5.8S.fasta.gz 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_ITS_ITSoneDB_MAPSeq.mseq.gz Taxonomic analysis ITSoneDB MAPseq ITSoneDB assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_ITSoneDB_MAPSeq.mseq.gz 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_ITS_ITSoneDB_OTU.tsv Taxonomic analysis ITSoneDB OTUs, counts and taxonomic assignments for ITSOneDB https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_ITSoneDB_OTU.tsv 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_ITS_ITSoneDB_OTU_TABLE_HDF5.biom Taxonomic analysis ITSoneDB OTUs, counts and taxonomic assignments for ITSOneDB https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_ITSoneDB_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_ITS_ITSoneDB_OTU_TABLE_JSON.biom Taxonomic analysis ITSoneDB OTUs, counts and taxonomic assignments for ITSOneDB https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_ITSoneDB_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_ITS_UNITE_MAPSeq.mseq.gz Taxonomic analysis UNITE MAPseq UNITE assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_UNITE_MAPSeq.mseq.gz 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_ITS_UNITE_OTU.tsv Taxonomic analysis UNITE OTUs, counts and taxonomic assignments for UNITE https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_UNITE_OTU.tsv 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_ITS_UNITE_OTU_TABLE_HDF5.biom Taxonomic analysis UNITE OTUs, counts and taxonomic assignments for UNITE https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_UNITE_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_ITS_UNITE_OTU_TABLE_JSON.biom Taxonomic analysis UNITE OTUs, counts and taxonomic assignments for UNITE https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_UNITE_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00524152 ERR169333_FASTQ_ITS_masked.fasta.gz Taxonomic analysis ITS Reads encoding ITS (with SSU and LSU sequences masked) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_masked.fasta.gz 5.0 amplicon +MGYA00575367 ERR169332_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ.fasta.gz 5.0 amplicon +MGYA00575367 ERR169332_FASTQ_5.8S.fasta.gz non-coding RNAs Reads encoding 5.8S https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ_5.8S.fasta.gz 5.0 amplicon +MGYA00575367 ERR169332_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ_SSU.fasta.gz 5.0 amplicon +MGYA00575367 ERR169332_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ_SSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00575367 ERR169332_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ_SSU_OTU.tsv 5.0 amplicon +MGYA00575367 ERR169332_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00575367 ERR169332_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00575368 ERR169331_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ.fasta.gz 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_5.8S.fasta.gz non-coding RNAs Reads encoding 5.8S https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_5.8S.fasta.gz 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_ITS_ITSoneDB_MAPSeq.mseq.gz Taxonomic analysis ITSoneDB MAPseq ITSoneDB assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_ITSoneDB_MAPSeq.mseq.gz 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_ITS_ITSoneDB_OTU.tsv Taxonomic analysis ITSoneDB OTUs, counts and taxonomic assignments for ITSOneDB https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_ITSoneDB_OTU.tsv 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_ITS_ITSoneDB_OTU_TABLE_HDF5.biom Taxonomic analysis ITSoneDB OTUs, counts and taxonomic assignments for ITSOneDB https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_ITSoneDB_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_ITS_ITSoneDB_OTU_TABLE_JSON.biom Taxonomic analysis ITSoneDB OTUs, counts and taxonomic assignments for ITSOneDB https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_ITSoneDB_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_ITS_UNITE_MAPSeq.mseq.gz Taxonomic analysis UNITE MAPseq UNITE assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_UNITE_MAPSeq.mseq.gz 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_ITS_UNITE_OTU.tsv Taxonomic analysis UNITE OTUs, counts and taxonomic assignments for UNITE https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_UNITE_OTU.tsv 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_ITS_UNITE_OTU_TABLE_HDF5.biom Taxonomic analysis UNITE OTUs, counts and taxonomic assignments for UNITE https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_UNITE_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_ITS_UNITE_OTU_TABLE_JSON.biom Taxonomic analysis UNITE OTUs, counts and taxonomic assignments for UNITE https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_UNITE_OTU_TABLE_JSON.biom 5.0 amplicon +MGYA00575368 ERR169331_FASTQ_ITS_masked.fasta.gz Taxonomic analysis ITS Reads encoding ITS (with SSU and LSU sequences masked) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_masked.fasta.gz 5.0 amplicon +MGYA00575369 ERR169330_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575369/file/ERR169330_FASTQ.fasta.gz 5.0 amplicon +MGYA00575369 ERR169330_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575369/file/ERR169330_FASTQ_SSU.fasta.gz 5.0 amplicon +MGYA00575369 ERR169330_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575369/file/ERR169330_FASTQ_SSU_MAPSeq.mseq.gz 5.0 amplicon +MGYA00575369 ERR169330_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575369/file/ERR169330_FASTQ_SSU_OTU.tsv 5.0 amplicon +MGYA00575369 ERR169330_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575369/file/ERR169330_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 amplicon +MGYA00575369 ERR169330_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575369/file/ERR169330_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 amplicon