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view test-data/taxonomic_analysis_unite/MGYS00002478_metadata.tsv @ 1:b613e5dd5e83 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/mg_toolkit commit df500c27a6ef0ea25e0361feada7df8dedee98f1
author | iuc |
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date | Tue, 30 Jul 2024 15:41:16 +0000 |
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analysis_id name group_type description download_url pipeline_version experiment_type MGYA00524152 ERR169333_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ.fasta.gz 5.0 amplicon MGYA00524152 ERR169333_FASTQ_5.8S.fasta.gz non-coding RNAs Reads encoding 5.8S https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_5.8S.fasta.gz 5.0 amplicon MGYA00524152 ERR169333_FASTQ_ITS_ITSoneDB_MAPSeq.mseq.gz Taxonomic analysis ITSoneDB MAPseq ITSoneDB assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_ITSoneDB_MAPSeq.mseq.gz 5.0 amplicon MGYA00524152 ERR169333_FASTQ_ITS_ITSoneDB_OTU.tsv Taxonomic analysis ITSoneDB OTUs, counts and taxonomic assignments for ITSOneDB https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_ITSoneDB_OTU.tsv 5.0 amplicon MGYA00524152 ERR169333_FASTQ_ITS_ITSoneDB_OTU_TABLE_HDF5.biom Taxonomic analysis ITSoneDB OTUs, counts and taxonomic assignments for ITSOneDB https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_ITSoneDB_OTU_TABLE_HDF5.biom 5.0 amplicon MGYA00524152 ERR169333_FASTQ_ITS_ITSoneDB_OTU_TABLE_JSON.biom Taxonomic analysis ITSoneDB OTUs, counts and taxonomic assignments for ITSOneDB https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_ITSoneDB_OTU_TABLE_JSON.biom 5.0 amplicon MGYA00524152 ERR169333_FASTQ_ITS_UNITE_MAPSeq.mseq.gz Taxonomic analysis UNITE MAPseq UNITE assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_UNITE_MAPSeq.mseq.gz 5.0 amplicon MGYA00524152 ERR169333_FASTQ_ITS_UNITE_OTU.tsv Taxonomic analysis UNITE OTUs, counts and taxonomic assignments for UNITE https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_UNITE_OTU.tsv 5.0 amplicon MGYA00524152 ERR169333_FASTQ_ITS_UNITE_OTU_TABLE_HDF5.biom Taxonomic analysis UNITE OTUs, counts and taxonomic assignments for UNITE https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_UNITE_OTU_TABLE_HDF5.biom 5.0 amplicon MGYA00524152 ERR169333_FASTQ_ITS_UNITE_OTU_TABLE_JSON.biom Taxonomic analysis UNITE OTUs, counts and taxonomic assignments for UNITE https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_UNITE_OTU_TABLE_JSON.biom 5.0 amplicon MGYA00524152 ERR169333_FASTQ_ITS_masked.fasta.gz Taxonomic analysis ITS Reads encoding ITS (with SSU and LSU sequences masked) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00524152/file/ERR169333_FASTQ_ITS_masked.fasta.gz 5.0 amplicon MGYA00575367 ERR169332_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ.fasta.gz 5.0 amplicon MGYA00575367 ERR169332_FASTQ_5.8S.fasta.gz non-coding RNAs Reads encoding 5.8S https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ_5.8S.fasta.gz 5.0 amplicon MGYA00575367 ERR169332_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ_SSU.fasta.gz 5.0 amplicon MGYA00575367 ERR169332_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ_SSU_MAPSeq.mseq.gz 5.0 amplicon MGYA00575367 ERR169332_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ_SSU_OTU.tsv 5.0 amplicon MGYA00575367 ERR169332_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 amplicon MGYA00575367 ERR169332_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575367/file/ERR169332_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 amplicon MGYA00575368 ERR169331_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ.fasta.gz 5.0 amplicon MGYA00575368 ERR169331_FASTQ_5.8S.fasta.gz non-coding RNAs Reads encoding 5.8S https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_5.8S.fasta.gz 5.0 amplicon MGYA00575368 ERR169331_FASTQ_ITS_ITSoneDB_MAPSeq.mseq.gz Taxonomic analysis ITSoneDB MAPseq ITSoneDB assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_ITSoneDB_MAPSeq.mseq.gz 5.0 amplicon MGYA00575368 ERR169331_FASTQ_ITS_ITSoneDB_OTU.tsv Taxonomic analysis ITSoneDB OTUs, counts and taxonomic assignments for ITSOneDB https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_ITSoneDB_OTU.tsv 5.0 amplicon MGYA00575368 ERR169331_FASTQ_ITS_ITSoneDB_OTU_TABLE_HDF5.biom Taxonomic analysis ITSoneDB OTUs, counts and taxonomic assignments for ITSOneDB https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_ITSoneDB_OTU_TABLE_HDF5.biom 5.0 amplicon MGYA00575368 ERR169331_FASTQ_ITS_ITSoneDB_OTU_TABLE_JSON.biom Taxonomic analysis ITSoneDB OTUs, counts and taxonomic assignments for ITSOneDB https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_ITSoneDB_OTU_TABLE_JSON.biom 5.0 amplicon MGYA00575368 ERR169331_FASTQ_ITS_UNITE_MAPSeq.mseq.gz Taxonomic analysis UNITE MAPseq UNITE assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_UNITE_MAPSeq.mseq.gz 5.0 amplicon MGYA00575368 ERR169331_FASTQ_ITS_UNITE_OTU.tsv Taxonomic analysis UNITE OTUs, counts and taxonomic assignments for UNITE https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_UNITE_OTU.tsv 5.0 amplicon MGYA00575368 ERR169331_FASTQ_ITS_UNITE_OTU_TABLE_HDF5.biom Taxonomic analysis UNITE OTUs, counts and taxonomic assignments for UNITE https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_UNITE_OTU_TABLE_HDF5.biom 5.0 amplicon MGYA00575368 ERR169331_FASTQ_ITS_UNITE_OTU_TABLE_JSON.biom Taxonomic analysis UNITE OTUs, counts and taxonomic assignments for UNITE https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_UNITE_OTU_TABLE_JSON.biom 5.0 amplicon MGYA00575368 ERR169331_FASTQ_ITS_masked.fasta.gz Taxonomic analysis ITS Reads encoding ITS (with SSU and LSU sequences masked) https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575368/file/ERR169331_FASTQ_ITS_masked.fasta.gz 5.0 amplicon MGYA00575369 ERR169330_FASTQ.fasta.gz Sequence data Processed nucleotide reads https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575369/file/ERR169330_FASTQ.fasta.gz 5.0 amplicon MGYA00575369 ERR169330_FASTQ_SSU.fasta.gz Taxonomic analysis SSU rRNA Reads encoding SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575369/file/ERR169330_FASTQ_SSU.fasta.gz 5.0 amplicon MGYA00575369 ERR169330_FASTQ_SSU_MAPSeq.mseq.gz Taxonomic analysis SSU rRNA MAPseq SSU assignments https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575369/file/ERR169330_FASTQ_SSU_MAPSeq.mseq.gz 5.0 amplicon MGYA00575369 ERR169330_FASTQ_SSU_OTU.tsv Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575369/file/ERR169330_FASTQ_SSU_OTU.tsv 5.0 amplicon MGYA00575369 ERR169330_FASTQ_SSU_OTU_TABLE_HDF5.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575369/file/ERR169330_FASTQ_SSU_OTU_TABLE_HDF5.biom 5.0 amplicon MGYA00575369 ERR169330_FASTQ_SSU_OTU_TABLE_JSON.biom Taxonomic analysis SSU rRNA OTUs, counts and taxonomic assignments for SSU rRNA https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00575369/file/ERR169330_FASTQ_SSU_OTU_TABLE_JSON.biom 5.0 amplicon