annotate test-data/test_stop_codon.out @ 0:b2f1cf977ca9 draft

planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
author iuc
date Sat, 30 Sep 2017 09:33:24 -0400
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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b2f1cf977ca9 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
1 read.header cdr3nt cdr3aa cdr.insert.qual mutations.qual v.segment d.segment j.segment cdr1.start.in.read cdr1.end.in.read cdr2.start.in.read cdr2.end.in.read cdr3.start.in.read cdr3.end.in.read v.end.in.cdr3 d.start.in.cdr3 d.end.in.cdr3 j.start.in.cdr3 v.del d.del.5 d.del.3 j.del mutations.nt.FR1 mutations.nt.CDR1 mutations.nt.FR2 mutations.nt.CDR2 mutations.nt.FR3 mutations.nt.CDR3 mutations.nt.FR4 rc complete has.cdr3 in.frame no.stop mutations.aa.FR1 mutations.aa.CDR1 mutations.aa.FR2 mutations.aa.CDR2 mutations.aa.FR3 mutations.aa.CDR3 mutations.aa.FR4 pol.v pol.d.5 pol.d.3 pol.j canonical contignt
b2f1cf977ca9 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
2 >AACATAGTAAATCAGTC|PRCONS=Human-IGHA|SEQORIENT=F|CREGION=Human-TRA-InternalC|CONSCOUNT=1|DUPCOUNT=1 . . IGHV4-39*05 IGHD2/OR15-2a*01 IGHJ4*01 215 216 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 S55:C>A,S57:C>G,S62:C>T,S63:T>A,S64:G>C false false false true false S18:S>Y,S19:L>V,S20:T>T,S21:C>T,S21:C>T -1 -1 -1 -1 false NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCCCGTACGTCACTACCACTGTCTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN