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comparison migmap.xml @ 4:29ec7b3a458b draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/migmap commit e32ce67ab5bbb46569f220489b72ecc11b7a0fd3"
author iuc
date Fri, 20 Nov 2020 14:26:40 +0000
parents 587fa797ede9
children 2c9f2a24f7a4
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3:587fa797ede9 4:29ec7b3a458b
1 <tool id="migmap" name="MiGMAP" version="@TOOL_VERSION@"> 1 <tool id="migmap" name="MiGMAP" version="@TOOL_VERSION@+galaxy1">
2 <description>mapper for full-length T- and B-cell repertoire sequencing 2 <description>mapper for full-length T- and B-cell repertoire sequencing
3 </description> 3 </description>
4 <macros> 4 <macros>
5 <token name="@TOOL_VERSION@">1.0.3</token> 5 <token name="@TOOL_VERSION@">1.0.3</token>
6 </macros> 6 </macros>
7 <requirements> 7 <requirements>
8 <requirement type="package" version="@TOOL_VERSION@">migmap</requirement> 8 <requirement type="package" version="@TOOL_VERSION@">migmap</requirement>
9 </requirements> 9 </requirements>
10 <command detect_errors='exit_code'><![CDATA[ 10 <command detect_errors='aggressive'><![CDATA[
11 export IGBLAST_PATH=\$(dirname \$(which igblastn)) && 11 export IGBLAST_PATH=\$(dirname \$(which igblastn)) &&
12 mkdir -p temp_db/igblast && 12 mkdir -p temp_db/igblast &&
13 ln -s "\${IGBLAST_PATH}/../share/igblast/bin/" ./temp_db/igblast && 13 ln -s "\${IGBLAST_PATH}/../share/igblast/bin/" ./temp_db/igblast &&
14 ln -s "\${IGBLAST_PATH}/../share/igblast/internal_data/" ./temp_db/igblast && 14 ln -s "\${IGBLAST_PATH}/../share/igblast/internal_data/" ./temp_db/igblast &&
15 ln -s "\${IGBLAST_PATH}/../share/igblast/optional_file/" ./temp_db/igblast && 15 ln -s "\${IGBLAST_PATH}/../share/igblast/optional_file/" ./temp_db/igblast &&