mmseqs2_easy_linclust_clustering: test-data/taxo

annotate test-data/taxo_result.html @ 0:9f6869226de1 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7

author	iuc
date	Thu, 27 Mar 2025 14:37:56 +0000
parents
children

rev	line source
0 9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1 <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2 <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3 <head>
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4 <meta charset="utf-8"/>
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5 <link rel="shortcut icon" 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9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6 <script id="notfound">window.onload=function(){document.body.innerHTML=""}</script>
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	7 <script language="javascript" type="text/javascript">
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	8 {//-----------------------------------------------------------------------------
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	9 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	10 // PURPOSE
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	11 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	12 // Krona is a flexible tool for exploring the relative proportions of
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	13 // hierarchical data, such as metagenomic classifications, using a
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	14 // radial, space-filling display. It is implemented using HTML5 and
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	15 // JavaScript, allowing charts to be explored locally or served over the
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	16 // Internet, requiring only a current version of any major web
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	17 // browser. Krona charts can be created using an Excel template or from
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	18 // common bioinformatic formats using the provided conversion scripts.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	19 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	20 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	21 // COPYRIGHT LICENSE
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	22 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	23 // Copyright (c) 2011, Battelle National Biodefense Institute (BNBI);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	24 // all rights reserved. Authored by: Brian Ondov, Nicholas Bergman, and
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	25 // Adam Phillippy
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	26 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	27 // This Software was prepared for the Department of Homeland Security
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	28 // (DHS) by the Battelle National Biodefense Institute, LLC (BNBI) as
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	29 // part of contract HSHQDC-07-C-00020 to manage and operate the National
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	30 // Biodefense Analysis and Countermeasures Center (NBACC), a Federally
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	31 // Funded Research and Development Center.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	32 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	33 // Redistribution and use in source and binary forms, with or without
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	34 // modification, are permitted provided that the following conditions are
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	35 // met:
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	36 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	37 // * Redistributions of source code must retain the above copyright
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	38 // notice, this list of conditions and the following disclaimer.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	39 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	40 // * Redistributions in binary form must reproduce the above copyright
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	41 // notice, this list of conditions and the following disclaimer in the
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	42 // documentation and/or other materials provided with the distribution.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	43 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	44 // * Neither the name of the Battelle National Biodefense Institute nor
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	45 // the names of its contributors may be used to endorse or promote
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	46 // products derived from this software without specific prior written
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	47 // permission.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	48 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	49 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	50 // "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	51 // LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	52 // A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	53 // HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	54 // SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	55 // LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	56 // DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	57 // THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	58 // (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	59 // OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	60 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	61 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	62 // TRADEMARK LICENSE
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	63 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	64 // KRONA(TM) is a trademark of the Department of Homeland Security, and use
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	65 // of the trademark is subject to the following conditions:
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	66 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	67 // * Distribution of the unchanged, official code/software using the
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	68 // KRONA(TM) mark is hereby permitted by the Department of Homeland
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	69 // Security, provided that the software is distributed without charge
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	70 // and modification.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	71 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	72 // * Distribution of altered source code/software using the KRONA(TM) mark
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	73 // is not permitted unless written permission has been granted by the
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	74 // Department of Homeland Security.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	75 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	76 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	77 // FOR MORE INFORMATION VISIT
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	78 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	79 // https://github.com/marbl/Krona/wiki/
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	80 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	81 //-----------------------------------------------------------------------------
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	82 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	83
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	84
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	85 var canvas;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	86 var context;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	87 var svg; // for snapshot mode
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	88 var collapse = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	89 var collapseCheckBox;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	90 var collapseLast;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	91 var compress;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	92 var compressCheckBox;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	93 var maxAbsoluteDepthText;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	94 var maxAbsoluteDepthButtonDecrease;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	95 var maxAbsoluteDepthButtonIncrease;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	96 var fontSize = 11;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	97 var fontSizeText;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	98 var fontSizeButtonDecrease;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	99 var fontSizeButtonIncrease;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	100 var fontSizeLast;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	101 var radiusButtonDecrease;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	102 var radiusButtonIncrease;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	103 var shorten;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	104 var shortenCheckBox;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	105 var maxAbsoluteDepth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	106 var backButton;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	107 var upButton;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	108 var forwardButton;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	109 var snapshotButton;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	110 var snapshotMode = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	111 var details;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	112 var detailsName;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	113 var search;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	114 var searchResults;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	115 var nSearchResults;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	116 var useHueCheckBox;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	117 var useHueDiv;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	118 var datasetDropDown;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	119 var datasetButtonLast;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	120 var datasetButtonPrev;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	121 var datasetButtonNext;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	122 var keyControl;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	123 var showKeys = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	124 var linkButton;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	125 var linkText;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	126 var frame;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	127
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	128 // Node references. Note that the meanings of 'selected' and 'focused' are
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	129 // swapped in the docs.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	130 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	131 var head; // the root of the entire tree
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	132 var selectedNode = 0; // the root of the current view
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	133 var focusNode = 0; // a node chosen for more info (single-click)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	134 var highlightedNode = 0; // mouse hover node
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	135 var highlightingHidden = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	136 var nodes = new Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	137 var currentNodeID = 0; // to iterate while loading
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	138
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	139 var nodeHistory = new Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	140 var nodeHistoryPosition = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	141
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	142 var dataEnabled = false; // true when supplemental files are present
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	143
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	144 // store non-Krona GET variables so they can be passed on to links
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	145 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	146 var getVariables = new Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	147
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	148 // selectedNodeLast is separate from the history, since we need to check
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	149 // properties of the last node viewed when browsing through the history
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	150 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	151 var selectedNodeLast = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	152 var zoomOut = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	153
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	154 // temporary zoom-in while holding the mouse button on a wedge
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	155 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	156 var quickLook = false; // true when in quick look state
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	157 var mouseDown = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	158 var mouseDownTime; // to detect mouse button hold
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	159 var quickLookHoldLength = 200;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	160
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	161 var imageWidth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	162 var imageHeight;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	163 var centerX;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	164 var centerY;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	165 var gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	166 var updateViewNeeded = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	167
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	168 // Determines the angle that the pie chart starts at. 90 degrees makes the
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	169 // center label consistent with the children.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	170 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	171 var rotationOffset = Math.PI / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	172
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	173 var buffer;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	174 var bufferFactor = .1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	175
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	176 // The maps are the small pie charts showing the current slice being viewed.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	177 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	178 var mapBuffer = 10;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	179 var mapRadius = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	180 var maxMapRadius = 25;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	181 var mapWidth = 150;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	182 var maxLabelOverhang = Math.PI * 4.18;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	183
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	184 // Keys are the labeled boxes for slices in the highest level that are too thin
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	185 // to label.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	186 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	187 var maxKeySizeFactor = 2; // will be multiplied by font size
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	188 var keySize;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	189 var keys;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	190 var keyBuffer = 10;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	191 var currentKey;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	192 var keyMinTextLeft;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	193 var keyMinAngle;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	194
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	195 var minRingWidthFactor = 5; // will be multiplied by font size
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	196 var maxPossibleDepth; // the theoretical max that can be displayed
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	197 var maxDisplayDepth; // the actual depth that will be displayed
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	198 var headerHeight = 0;//document.getElementById('options').clientHeight;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	199 var historySpacingFactor = 1.6; // will be multiplied by font size
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	200 var historyAlphaDelta = .25;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	201
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	202 // appearance
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	203 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	204 var lineOpacity = 0.3;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	205 var saturation = 0.5;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	206 var lightnessBase = 0.6;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	207 var lightnessMax = .8;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	208 var thinLineWidth = .3;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	209 var highlightLineWidth = 1.5;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	210 var labelBoxBuffer = 6;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	211 var labelBoxRounding = 15;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	212 var labelWidthFudge = 1.05; // The width of unshortened labels are set slightly
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	213 // longer than the name width so the animation
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	214 // finishes faster.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	215 var fontNormal;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	216 var fontBold;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	217 var fontFamily = 'sans-serif';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	218 //var fontFaceBold = 'bold Arial';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	219 var nodeRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	220 var angleFactor;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	221 var tickLength;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	222 var compressedRadii;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	223
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	224 // colors
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	225 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	226 var highlightFill = 'rgba(255, 255, 255, .3)';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	227 var colorUnclassified = 'rgb(220,220,220)';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	228
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	229 // label staggering
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	230 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	231 var labelOffsets; // will store the current offset at each depth
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	232 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	233 // This will store pointers to the last node that had a label in each offset (or "track") of a
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	234 // each depth. These will be used to shorten neighboring labels that would overlap.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	235 // The [nLabelNodes] index will store the last node with a radial label.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	236 // labelFirstNodes is the same, but to check for going all the way around and
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	237 // overlapping the first labels.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	238 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	239 var labelLastNodes;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	240 var labelFirstNodes;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	241 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	242 var nLabelOffsets = 3; // the number of offsets to use
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	243
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	244 var mouseX = -1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	245 var mouseY = -1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	246 var mouseXRel = -1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	247 var mouseYRel = -1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	248
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	249 // tweening
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	250 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	251 var progress = 0; // for tweening; goes from 0 to 1.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	252 var progressLast = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	253 var tweenFactor = 0; // progress converted by a curve for a smoother effect.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	254 var tweenLength = 850; // in ms
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	255 var tweenCurvature = 13;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	256 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	257 // tweenMax is used to scale the sigmoid function so its range is [0,1] for the
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	258 // domain [0,1]
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	259 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	260 var tweenMax = 1 / (1 + Math.exp(-tweenCurvature / 2));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	261 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	262 var tweenStartTime;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	263
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	264 // for framerate debug
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	265 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	266 var tweenFrames = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	267 var fpsDisplay = document.getElementById('frameRate');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	268
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	269 // Arrays to translate xml attribute names into displayable attribute names
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	270 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	271 var attributes = new Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	272 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	273 var magnitudeIndex; // the index of attribute arrays used for magnitude
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	274 var membersAssignedIndex;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	275 var membersSummaryIndex;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	276
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	277 // For defining gradients
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	278 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	279 var hueDisplayName;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	280 var hueStopPositions;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	281 var hueStopHues;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	282 var hueStopText;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	283
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	284 // multiple datasets
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	285 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	286 var currentDataset = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	287 var lastDataset = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	288 var datasets = 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	289 var datasetNames;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	290 var datasetSelectSize = 30;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	291 var datasetAlpha = new Tween(0, 0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	292 var datasetWidths = new Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	293 var datasetChanged;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	294 var datasetSelectWidth = 50;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	295
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	296 window.onload = load;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	297
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	298 var image;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	299 var hiddenPattern;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	300 var loadingImage;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	301 var logoImage;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	302
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	303 function backingScale()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	304 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	305 if ('devicePixelRatio' in window)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	306 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	307 if (window.devicePixelRatio > 1)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	308 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	309 return window.devicePixelRatio;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	310 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	311 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	312
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	313 return 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	314 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	315
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	316 function resize()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	317 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	318 imageWidth = window.innerWidth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	319 imageHeight = window.innerHeight;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	320
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	321 if ( ! snapshotMode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	322 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	323 context.canvas.width = imageWidth * backingScale();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	324 context.canvas.height = imageHeight * backingScale();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	325 context.canvas.style.width = imageWidth + "px"
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	326 context.canvas.style.height = imageHeight + "px"
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	327 context.scale(backingScale(), backingScale());
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	328 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	329
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	330 if ( datasetDropDown )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	331 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	332 var ratio =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	333 (datasetDropDown.offsetTop + datasetDropDown.clientHeight) * 2 /
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	334 imageHeight;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	335
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	336 if ( ratio > 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	337 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	338 ratio = 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	339 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	340
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	341 ratio = Math.sqrt(ratio);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	342
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	343 datasetSelectWidth =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	344 (datasetDropDown.offsetLeft + datasetDropDown.clientWidth) * ratio;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	345 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	346 var leftMargin = datasets > 1 ? datasetSelectWidth + 30 : 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	347 var minDimension = imageWidth - mapWidth - leftMargin > imageHeight ?
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	348 imageHeight :
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	349 imageWidth - mapWidth - leftMargin;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	350
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	351 maxMapRadius = minDimension * .03;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	352 buffer = minDimension * bufferFactor;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	353 margin = minDimension * .015;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	354 centerX = (imageWidth - mapWidth - leftMargin) / 2 + leftMargin;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	355 centerY = imageHeight / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	356 gRadius = minDimension / 2 - buffer;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	357 //context.font = '11px sans-serif';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	358 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	359
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	360 function handleResize()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	361 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	362 updateViewNeeded = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	363 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	364
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	365 function Attribute()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	366 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	367 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	368
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	369 function Tween(start, end)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	370 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	371 this.start = start;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	372 this.end = end;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	373 this.current = this.start;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	374
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	375 this.current = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	376 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	377 if ( progress == 1 \|\| this.start == this.end )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	378 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	379 return this.end;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	380 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	381 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	382 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	383 return this.start + tweenFactor * (this.end - this.start);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	384 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	385 };
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	386
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	387 this.setTarget = function(target)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	388 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	389 this.start = this.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	390 this.end = target;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	391 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	392 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	393
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	394 function Node()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	395 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	396 this.id = currentNodeID;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	397 currentNodeID++;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	398 nodes[this.id] = this;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	399
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	400 this.angleStart = new Tween(Math.PI, 0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	401 this.angleEnd = new Tween(Math.PI, 0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	402 this.radiusInner = new Tween(1, 1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	403 this.labelRadius = new Tween(1, 1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	404 this.labelWidth = new Tween(0, 0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	405 this.scale = new Tween(1, 1); // TEMP
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	406 this.radiusOuter = new Tween(1, 1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	407
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	408 this.r = new Tween(255, 255);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	409 this.g = new Tween(255, 255);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	410 this.b = new Tween(255, 255);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	411
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	412 this.alphaLabel = new Tween(0, 1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	413 this.alphaLine = new Tween(0, 1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	414 this.alphaArc = new Tween(0, 0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	415 this.alphaWedge = new Tween(0, 1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	416 this.alphaOther = new Tween(0, 1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	417 this.alphaPattern = new Tween(0, 0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	418 this.children = Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	419 this.parent = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	420
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	421 this.attributes = new Array(attributes.length);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	422
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	423 this.addChild = function(child)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	424 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	425 this.children.push(child);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	426 };
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	427
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	428 this.addLabelNode = function(depth, labelOffset)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	429 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	430 if ( labelHeadNodes[depth][labelOffset] == 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	431 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	432 // this will become the head node for this list
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	433
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	434 labelHeadNodes[depth][labelOffset] = this;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	435 this.labelPrev = this;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	436 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	437
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	438 var head = labelHeadNodes[depth][labelOffset];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	439
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	440 this.labelNext = head;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	441 this.labelPrev = head.labelPrev;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	442 head.labelPrev.labelNext = this;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	443 head.labelPrev = this;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	444 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	445
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	446 this.canDisplayDepth = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	447 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	448 // whether this node is at a depth that can be displayed, according
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	449 // to the max absolute depth
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	450
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	451 return this.depth <= maxAbsoluteDepth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	452 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	453
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	454 this.canDisplayHistory = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	455 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	456 var radiusInner;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	457
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	458 if ( compress )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	459 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	460 radiusInner = compressedRadii[0];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	461 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	462 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	463 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	464 radiusInner = nodeRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	465 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	466
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	467 return (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	468 -this.labelRadius.end * gRadius +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	469 historySpacingFactor * fontSize / 2 <
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	470 radiusInner * gRadius
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	471 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	472 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	473
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	474 this.canDisplayLabelCurrent = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	475 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	476 return (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	477 (this.angleEnd.current() - this.angleStart.current()) *
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	478 (this.radiusInner.current() * gRadius + gRadius) >=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	479 minWidth());
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	480 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	481
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	482 this.checkHighlight = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	483 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	484 if ( this.children.length == 0 && this == focusNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	485 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	486 //return false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	487 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	488
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	489 if ( this.hide )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	490 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	491 return false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	492 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	493
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	494 if ( this.radiusInner.end == 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	495 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	496 // compressed to the outside; don't check
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	497
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	498 return false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	499 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	500
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	501 var highlighted = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	502
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	503 var angleStartCurrent = this.angleStart.current() + rotationOffset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	504 var angleEndCurrent = this.angleEnd.current() + rotationOffset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	505 var radiusInner = this.radiusInner.current() * gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	506
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	507 for ( var i = 0; i < this.children.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	508 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	509 highlighted = this.children[i].checkHighlight();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	510
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	511 if ( highlighted )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	512 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	513 return true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	514 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	515 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	516
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	517 if ( this.radial )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	518 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	519 var angleText = (angleStartCurrent + angleEndCurrent) / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	520 var radiusText = (gRadius + radiusInner) / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	521
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	522 context.rotate(angleText);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	523 context.beginPath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	524 context.moveTo(radiusText, -fontSize);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	525 context.lineTo(radiusText, fontSize);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	526 context.lineTo(radiusText + centerX, fontSize);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	527 context.lineTo(radiusText + centerX, -fontSize);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	528 context.closePath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	529 context.rotate(-angleText);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	530
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	531 if ( context.isPointInPath(mouseXRel, mouseYRel) )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	532 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	533 var label = String(this.getPercentage()) + '%' + ' ' + this.name;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	534
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	535 if ( this.searchResultChildren() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	536 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	537 label += searchResultString(this.searchResultChildren());
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	538 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	539
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	540 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	541 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	542 Math.sqrt((mouseXRel) * (mouseXRel) + (mouseYRel) * (mouseYRel)) / backingScale() <
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	543 radiusText + measureText(label)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	544 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	545 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	546 highlighted = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	547 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	548 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	549 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	550 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	551 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	552 for ( var i = 0; i < this.hiddenLabels.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	553 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	554 var hiddenLabel = this.hiddenLabels[i];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	555
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	556 context.rotate(hiddenLabel.angle);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	557 context.beginPath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	558 context.moveTo(gRadius, -fontSize);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	559 context.lineTo(gRadius, fontSize);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	560 context.lineTo(gRadius + centerX, fontSize);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	561 context.lineTo(gRadius + centerX, -fontSize);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	562 context.closePath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	563 context.rotate(-hiddenLabel.angle);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	564
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	565 if ( context.isPointInPath(mouseXRel, mouseYRel) )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	566 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	567 var label = String(hiddenLabel.value) + ' more';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	568
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	569 if ( hiddenLabel.search )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	570 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	571 label += searchResultString(hiddenLabel.search);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	572 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	573
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	574 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	575 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	576 Math.sqrt((mouseXRel) * (mouseXRel) + (mouseYRel) * (mouseYRel)) / backingScale() <
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	577 gRadius + fontSize + measureText(label)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	578 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	579 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	580 highlighted = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	581 break;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	582 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	583 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	584 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	585 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	586
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	587 if ( ! highlighted && this != selectedNode && ! this.getCollapse() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	588 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	589 context.beginPath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	590 context.arc(0, 0, radiusInner, angleStartCurrent, angleEndCurrent, false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	591 context.arc(0, 0, gRadius, angleEndCurrent, angleStartCurrent, true);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	592 context.closePath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	593
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	594 if ( context.isPointInPath(mouseXRel, mouseYRel) )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	595 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	596 highlighted = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	597 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	598
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	599 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	600 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	601 ! highlighted &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	602 (angleEndCurrent - angleStartCurrent) *
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	603 (radiusInner + gRadius) <
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	604 minWidth() &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	605 this.getDepth() == selectedNode.getDepth() + 1
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	606 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	607 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	608 if ( showKeys && this.checkHighlightKey() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	609 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	610 highlighted = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	611 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	612 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	613 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	614
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	615 if ( highlighted )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	616 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	617 if ( this != highlightedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	618 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	619 // document.body.style.cursor='pointer';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	620 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	621
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	622 highlightedNode = this;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	623 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	624
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	625 return highlighted;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	626 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	627
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	628 this.checkHighlightCenter = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	629 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	630 if ( ! this.canDisplayHistory() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	631 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	632 return;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	633 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	634
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	635 var cx = centerX;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	636 var cy = centerY - this.labelRadius.end * gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	637 //var dim = context.measureText(this.name);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	638
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	639 var width = this.nameWidth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	640
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	641 if ( this.searchResultChildren() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	642 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	643 var results = searchResultString(this.searchResultChildren());
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	644 var dim = context.measureText(results);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	645 width += dim.width;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	646 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	647
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	648 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	649 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	650 mouseX > cx - width / 2 &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	651 mouseX < cx + width / 2 &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	652 mouseY > cy - historySpacingFactor * fontSize / 2 &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	653 mouseY < cy + historySpacingFactor * fontSize / 2
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	654 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	655 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	656 highlightedNode = this;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	657 return;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	658 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	659
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	660 if ( this.getParent() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	661 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	662 this.getParent().checkHighlightCenter();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	663 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	664 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	665
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	666 this.checkHighlightKey = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	667 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	668 var offset = keyOffset();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	669
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	670 var xMin = imageWidth - keySize - margin - this.keyNameWidth - keyBuffer;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	671 var xMax = imageWidth - margin;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	672 var yMin = offset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	673 var yMax = offset + keySize;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	674
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	675 currentKey++;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	676
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	677 return (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	678 mouseX > xMin &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	679 mouseX < xMax &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	680 mouseY > yMin &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	681 mouseY < yMax);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	682 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	683
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	684 this.checkHighlightMap = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	685 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	686 if ( this.parent )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	687 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	688 this.parent.checkHighlightMap();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	689 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	690
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	691 if ( this.getCollapse() \|\| this == focusNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	692 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	693 return;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	694 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	695
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	696 var box = this.getMapPosition();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	697
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	698 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	699 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	700 mouseX > box.x - mapRadius &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	701 mouseX < box.x + mapRadius &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	702 mouseY > box.y - mapRadius &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	703 mouseY < box.y + mapRadius
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	704 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	705 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	706 highlightedNode = this;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	707 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	708 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	709
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	710 /* this.collapse = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	711 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	712 for (var i = 0; i < this.children.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	713 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	714 this.children[i] = this.children[i].collapse();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	715 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	716
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	717 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	718 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	719 this.children.length == 1 &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	720 this.children[0].magnitude == this.magnitude
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	721 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	722 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	723 this.children[0].parent = this.parent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	724 this.children[0].getDepth() = this.parent.getDepth() + 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	725 return this.children[0];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	726 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	727 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	728 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	729 return this;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	730 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	731 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	732 */
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	733 this.draw = function(labelMode, selected, searchHighlighted)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	734 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	735 var depth = this.getDepth() - selectedNode.getDepth() + 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	736 // var hidden = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	737
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	738 if ( selectedNode == this )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	739 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	740 selected = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	741 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	742
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	743 var angleStartCurrent = this.angleStart.current() + rotationOffset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	744 var angleEndCurrent = this.angleEnd.current() + rotationOffset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	745 var radiusInner = this.radiusInner.current() * gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	746 var canDisplayLabelCurrent = this.canDisplayLabelCurrent();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	747 var hiddenSearchResults = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	748
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	749 /* if ( ! this.hide )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	750 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	751 for ( var i = 0; i < this.children.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	752 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	753 if ( this.children[i].hide && this.children[i].searchResults )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	754 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	755 hiddenSearchResults = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	756 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	757 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	758 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	759 */
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	760 var drawChildren =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	761 ( ! this.hide \|\| ! this.hidePrev && progress < 1 ) &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	762 ( ! this.hideAlone \|\| ! this.hideAlonePrev && progress < 1 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	763
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	764 // if ( this.alphaWedge.current() > 0 \|\| this.alphaLabel.current() > 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	765 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	766 var lastChildAngleEnd = angleStartCurrent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	767
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	768 if ( this.hasChildren() )//canDisplayChildren )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	769 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	770 lastChildAngleEnd =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	771 this.children[this.children.length - 1].angleEnd.current()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	772 + rotationOffset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	773 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	774
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	775 if ( labelMode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	776 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	777 var drawRadial =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	778 !(
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	779 this.parent &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	780 this.parent != selectedNode &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	781 angleEndCurrent == this.parent.angleEnd.current() + rotationOffset
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	782 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	783
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	784 //if ( angleStartCurrent != angleEndCurrent )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	785 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	786 this.drawLines(angleStartCurrent, angleEndCurrent, radiusInner, drawRadial, selected);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	787 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	788
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	789 var alphaOtherCurrent = this.alphaOther.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	790 var childRadiusInner;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	791
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	792 if ( this == selectedNode \|\| alphaOtherCurrent )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	793 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	794 childRadiusInner =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	795 this.children.length ?
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	796 this.children[this.children.length - 1].radiusInner.current() * gRadius
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	797 : radiusInner
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	798 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	799
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	800 if ( this == selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	801 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	802 this.drawReferenceRings(childRadiusInner);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	803 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	804
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	805 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	806 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	807 selected &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	808 ! searchHighlighted &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	809 this != selectedNode &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	810 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	811 this.isSearchResult \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	812 this.hideAlone && this.searchResultChildren() \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	813 false
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	814 // this.hide &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	815 // this.containsSearchResult
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	816 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	817 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	818 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	819 context.globalAlpha = this.alphaWedge.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	820
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	821 drawWedge
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	822 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	823 angleStartCurrent,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	824 angleEndCurrent,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	825 radiusInner,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	826 gRadius,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	827 highlightFill,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	828 0,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	829 true
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	830 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	831
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	832 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	833 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	834 this.keyed &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	835 ! showKeys &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	836 this.searchResults &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	837 ! searchHighlighted &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	838 this != highlightedNode &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	839 this != focusNode
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	840 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	841 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	842 var angle = (angleEndCurrent + angleStartCurrent) / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	843 this.drawLabel(angle, true, false, true, true);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	844 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	845
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	846 //this.drawHighlight(false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	847 searchHighlighted = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	848 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	849
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	850 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	851 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	852 this == selectedNode \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	853 // true
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	854 //(canDisplayLabelCurrent) &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	855 this != highlightedNode &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	856 this != focusNode
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	857 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	858 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	859 if ( this.radial != this.radialPrev && this.alphaLabel.end == 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	860 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	861 context.globalAlpha = tweenFactor;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	862 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	863 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	864 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	865 context.globalAlpha = this.alphaLabel.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	866 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	867
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	868 this.drawLabel
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	869 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	870 (angleStartCurrent + angleEndCurrent) / 2,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	871 this.hideAlone && this.searchResultChildren() \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	872 (this.isSearchResult \|\| hiddenSearchResults) && selected,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	873 this == selectedNode && ! this.radial,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	874 selected,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	875 this.radial
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	876 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	877
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	878 if ( this.radial != this.radialPrev && this.alphaLabel.start == 1 && progress < 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	879 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	880 context.globalAlpha = 1 - tweenFactor;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	881
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	882 this.drawLabel
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	883 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	884 (angleStartCurrent + angleEndCurrent) / 2,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	885 (this.isSearchResult \|\| hiddenSearchResults) && selected,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	886 this == selectedNodeLast && ! this.radialPrev,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	887 selected,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	888 this.radialPrev
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	889 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	890 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	891 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	892
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	893 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	894 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	895 alphaOtherCurrent &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	896 lastChildAngleEnd != null
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	897 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	898 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	899 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	900 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	901 (angleEndCurrent - lastChildAngleEnd) *
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	902 (childRadiusInner + gRadius) >=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	903 minWidth()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	904 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	905 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	906 //context.font = fontNormal;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	907 context.globalAlpha = this.alphaOther.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	908
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	909 drawTextPolar
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	910 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	911 this.getUnclassifiedText(),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	912 this.getUnclassifiedPercentage(),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	913 (lastChildAngleEnd + angleEndCurrent) / 2,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	914 (childRadiusInner + gRadius) / 2,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	915 true,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	916 false,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	917 false,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	918 0,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	919 0
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	920 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	921 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	922 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	923
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	924 if ( this == selectedNode && this.keyUnclassified && showKeys )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	925 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	926 this.drawKey
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	927 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	928 (lastChildAngleEnd + angleEndCurrent) / 2,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	929 false,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	930 false
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	931 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	932 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	933 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	934 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	935 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	936 var alphaWedgeCurrent = this.alphaWedge.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	937
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	938 if ( alphaWedgeCurrent \|\| this.alphaOther.current() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	939 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	940 var currentR = this.r.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	941 var currentG = this.g.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	942 var currentB = this.b.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	943
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	944 var fill = rgbText(currentR, currentG, currentB);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	945
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	946 var radiusOuter;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	947 var lastChildAngle;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	948 var truncateWedge =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	949 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	950 (this.hasChildren() \|\| this == selectedNode ) &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	951 ! this.keyed &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	952 (compress \|\| depth < maxDisplayDepth) &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	953 drawChildren
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	954 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	955
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	956 if ( truncateWedge )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	957 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	958 radiusOuter = this.children.length ? this.children[0].radiusInner.current() * gRadius : radiusInner;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	959 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	960 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	961 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	962 radiusOuter = gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	963 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	964 /*
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	965 if ( this.hasChildren() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	966 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	967 radiusOuter = this.children[0].getUncollapsed().radiusInner.current() * gRadius + 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	968 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	969 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	970 { // TEMP
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	971 radiusOuter = radiusInner + nodeRadius * gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	972
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	973 if ( radiusOuter > gRadius )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	974 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	975 radiusOuter = gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	976 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	977 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	978 */
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	979 context.globalAlpha = alphaWedgeCurrent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	980
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	981 if ( radiusInner != radiusOuter \|\| truncateWedge )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	982 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	983 drawWedge
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	984 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	985 angleStartCurrent,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	986 angleEndCurrent,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	987 radiusInner,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	988 radiusOuter,//this.radiusOuter.current() * gRadius,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	989 //'rgba(0, 200, 0, .1)',
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	990 fill,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	991 this.alphaPattern.current()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	992 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	993
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	994 if ( truncateWedge )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	995 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	996 // fill in the extra space if the sum of our childrens'
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	997 // magnitudes is less than ours
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	998
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	999 if ( lastChildAngleEnd < angleEndCurrent )//&& false) // TEMP
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1000 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1001 if ( radiusOuter > 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1002 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1003 // overlap slightly to hide the seam
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1004
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1005 // radiusOuter -= 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1006 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1007
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1008 if ( alphaWedgeCurrent < 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1009 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1010 context.globalAlpha = this.alphaOther.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1011 drawWedge
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1012 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1013 lastChildAngleEnd,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1014 angleEndCurrent,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1015 radiusOuter,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1016 gRadius,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1017 colorUnclassified,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1018 0
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1019 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1020 context.globalAlpha = alphaWedgeCurrent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1021 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1022
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1023 drawWedge
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1024 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1025 lastChildAngleEnd,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1026 angleEndCurrent,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1027 radiusOuter,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1028 gRadius,//this.radiusOuter.current() * gRadius,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1029 //'rgba(200, 0, 0, .1)',
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1030 fill,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1031 this.alphaPattern.current()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1032 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1033 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1034 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1035
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1036 if ( radiusOuter < gRadius )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1037 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1038 // patch up the seam
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1039 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1040 context.beginPath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1041 context.arc(0, 0, radiusOuter, angleStartCurrent/lastChildAngleEnd/, angleEndCurrent, false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1042 context.strokeStyle = fill;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1043 context.lineWidth = 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1044 context.stroke();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1045 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1046 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1047
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1048 if ( this.keyed && selected && showKeys )//&& progress == 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1049 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1050 this.drawKey
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1051 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1052 (angleStartCurrent + angleEndCurrent) / 2,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1053 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1054 this == highlightedNode \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1055 this == focusNode \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1056 this.searchResults
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1057 ),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1058 this == highlightedNode \|\| this == focusNode
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1059 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1060 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1061 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1062 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1063 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1064
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1065 this.hiddenLabels = Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1066
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1067 if ( drawChildren )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1068 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1069 // draw children
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1070 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1071 for ( var i = 0; i < this.children.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1072 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1073 if ( this.drawHiddenChildren(i, selected, labelMode, searchHighlighted) )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1074 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1075 i = this.children[i].hiddenEnd;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1076 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1077 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1078 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1079 this.children[i].draw(labelMode, selected, searchHighlighted);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1080 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1081 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1082 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1083 };
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1084
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1085 this.drawHiddenChildren = function
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1086 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1087 firstHiddenChild,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1088 selected,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1089 labelMode,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1090 searchHighlighted
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1091 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1092 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1093 var firstChild = this.children[firstHiddenChild];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1094
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1095 if ( firstChild.hiddenEnd == null \|\| firstChild.radiusInner.current() == 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1096 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1097 return false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1098 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1099
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1100 for ( var i = firstHiddenChild; i < firstChild.hiddenEnd; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1101 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1102 if ( ! this.children[i].hide \|\| ! this.children[i].hidePrev && progress < 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1103 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1104 return false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1105 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1106 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1107
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1108 var angleStart = firstChild.angleStart.current() + rotationOffset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1109 var lastChild = this.children[firstChild.hiddenEnd];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1110 var angleEnd = lastChild.angleEnd.current() + rotationOffset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1111 var radiusInner = gRadius * firstChild.radiusInner.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1112 var hiddenChildren = firstChild.hiddenEnd - firstHiddenChild + 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1113
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1114 if ( labelMode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1115 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1116 var hiddenSearchResults = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1117
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1118 for ( var i = firstHiddenChild; i <= firstChild.hiddenEnd; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1119 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1120 hiddenSearchResults += this.children[i].searchResults;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1121
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1122 if ( this.children[i].magnitude == 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1123 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1124 hiddenChildren--;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1125 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1126 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1127
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1128 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1129 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1130 selected &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1131 (angleEnd - angleStart) *
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1132 (gRadius + gRadius) >=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1133 minWidth() \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1134 this == highlightedNode &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1135 hiddenChildren \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1136 hiddenSearchResults
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1137 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1138 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1139 context.globalAlpha = this.alphaWedge.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1140
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1141 this.drawHiddenLabel
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1142 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1143 angleStart,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1144 angleEnd,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1145 hiddenChildren,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1146 hiddenSearchResults
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1147 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1148 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1149 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1150
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1151 var drawWedges = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1152
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1153 for ( var i = firstHiddenChild; i <= firstChild.hiddenEnd; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1154 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1155 // all hidden children must be completely hidden to draw together
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1156
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1157 if ( this.children[i].alphaPattern.current() != this.children[i].alphaWedge.current() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1158 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1159 drawWedges = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1160 break;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1161 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1162 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1163
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1164 if ( labelMode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1165 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1166 if ( drawWedges )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1167 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1168 var drawRadial = (angleEnd < this.angleEnd.current() + rotationOffset);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1169 this.drawLines(angleStart, angleEnd, radiusInner, drawRadial);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1170 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1171
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1172 if ( hiddenSearchResults && ! searchHighlighted )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1173 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1174 drawWedge
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1175 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1176 angleStart,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1177 angleEnd,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1178 radiusInner,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1179 gRadius,//this.radiusOuter.current() * gRadius,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1180 highlightFill,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1181 0,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1182 true
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1183 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1184 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1185 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1186 else if ( drawWedges )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1187 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1188 context.globalAlpha = this.alphaWedge.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1189
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1190 var fill = rgbText
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1191 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1192 firstChild.r.current(),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1193 firstChild.g.current(),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1194 firstChild.b.current()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1195 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1196
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1197 drawWedge
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1198 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1199 angleStart,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1200 angleEnd,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1201 radiusInner,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1202 gRadius,//this.radiusOuter.current() * gRadius,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1203 fill,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1204 context.globalAlpha,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1205 false
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1206 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1207 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1208
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1209 return drawWedges;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1210 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1211
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1212 this.drawHiddenLabel = function(angleStart, angleEnd, value, hiddenSearchResults)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1213 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1214 var textAngle = (angleStart + angleEnd) / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1215 var labelRadius = gRadius + fontSize;//(radiusInner + radius) / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1216
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1217 var hiddenLabel = Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1218
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1219 hiddenLabel.value = value;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1220 hiddenLabel.angle = textAngle;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1221 hiddenLabel.search = hiddenSearchResults;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1222
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1223 this.hiddenLabels.push(hiddenLabel);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1224
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1225 drawTick(gRadius - fontSize * .75, fontSize * 1.5, textAngle);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1226 drawTextPolar
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1227 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1228 value.toString() + ' more',
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1229 0, // inner text
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1230 textAngle,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1231 labelRadius,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1232 true, // radial
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1233 hiddenSearchResults, // bubble
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1234 this == highlightedNode \|\| this == focusNode, // bold
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1235 false,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1236 hiddenSearchResults
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1237 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1238 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1239
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1240 this.drawHighlight = function(bold)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1241 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1242 var angleStartCurrent = this.angleStart.current() + rotationOffset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1243 var angleEndCurrent = this.angleEnd.current() + rotationOffset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1244 var radiusInner = this.radiusInner.current() * gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1245
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1246 //this.setHighlightStyle();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1247
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1248 if ( this == focusNode && this == highlightedNode && this.hasChildren() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1249 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1250 // context.fillStyle = "rgba(255, 255, 255, .3)";
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1251 arrow
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1252 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1253 angleStartCurrent,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1254 angleEndCurrent,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1255 radiusInner
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1256 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1257 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1258 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1259 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1260 drawWedge
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1261 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1262 angleStartCurrent,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1263 angleEndCurrent,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1264 radiusInner,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1265 gRadius,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1266 highlightFill,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1267 0,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1268 true
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1269 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1270 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1271
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1272 // check if hidden children should be highlighted
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1273 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1274 for ( var i = 0; i < this.children.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1275 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1276 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1277 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1278 this.children[i].getDepth() - selectedNode.getDepth() + 1 <=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1279 maxDisplayDepth &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1280 this.children[i].hiddenEnd != null
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1281 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1282 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1283 var firstChild = this.children[i];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1284 var lastChild = this.children[firstChild.hiddenEnd];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1285 var hiddenAngleStart = firstChild.angleStart.current() + rotationOffset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1286 var hiddenAngleEnd = lastChild.angleEnd.current() + rotationOffset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1287 var hiddenRadiusInner = gRadius * firstChild.radiusInner.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1288
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1289 drawWedge
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1290 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1291 hiddenAngleStart,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1292 hiddenAngleEnd,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1293 hiddenRadiusInner,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1294 gRadius,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1295 'rgba(255, 255, 255, .3)',
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1296 0,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1297 true
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1298 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1299
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1300 if ( false && ! this.searchResults )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1301 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1302 this.drawHiddenLabel
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1303 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1304 hiddenAngleStart,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1305 hiddenAngleEnd,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1306 firstChild.hiddenEnd - i + 1
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1307 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1308 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1309
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1310 i = firstChild.hiddenEnd;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1311 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1312 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1313
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1314 // context.strokeStyle = 'black';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1315 context.fillStyle = 'black';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1316
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1317 var highlight = ! ( progress < 1 && zoomOut && this == selectedNodeLast );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1318
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1319 var angle = (angleEndCurrent + angleStartCurrent) / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1320
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1321 if ( ! (this.keyed && showKeys) )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1322 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1323 this.drawLabel(angle, true, bold, true, this.radial);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1324 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1325 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1326
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1327 this.drawHighlightCenter = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1328 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1329 if ( ! this.canDisplayHistory() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1330 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1331 return;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1332 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1333
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1334 context.lineWidth = highlightLineWidth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1335 context.strokeStyle = 'black';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1336 context.fillStyle = "rgba(255, 255, 255, .6)";
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1337
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1338 context.fillStyle = 'black';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1339 this.drawLabel(3 * Math.PI / 2, true, true, false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1340 context.font = fontNormal;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1341 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1342
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1343 this.drawKey = function(angle, highlight, bold)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1344 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1345 var offset = keyOffset();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1346 var color;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1347 var colorText = this.magnitude == 0 ? 'gray' : 'black';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1348 var patternAlpha = this.alphaPattern.end;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1349 var boxLeft = imageWidth - keySize - margin;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1350 var textY = offset + keySize / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1351
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1352 var label;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1353 var keyNameWidth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1354
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1355 if ( this == selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1356 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1357 color = colorUnclassified;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1358 label =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1359 this.getUnclassifiedText() +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1360 ' ' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1361 this.getUnclassifiedPercentage();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1362 keyNameWidth = measureText(label, false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1363 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1364 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1365 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1366 label = this.keyLabel;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1367 color = rgbText(this.r.end, this.g.end, this.b.end);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1368
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1369 if ( highlight )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1370 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1371 if ( this.searchResultChildren() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1372 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1373 label = label + searchResultString(this.searchResultChildren());
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1374 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1375
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1376 keyNameWidth = measureText(label, bold);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1377 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1378 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1379 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1380 keyNameWidth = this.keyNameWidth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1381 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1382 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1383
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1384 var textLeft = boxLeft - keyBuffer - keyNameWidth - fontSize / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1385 var labelLeft = textLeft;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1386
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1387 if ( labelLeft > keyMinTextLeft - fontSize / 2 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1388 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1389 keyMinTextLeft -= fontSize / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1390
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1391 if ( keyMinTextLeft < centerX - gRadius + fontSize / 2 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1392 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1393 keyMinTextLeft = centerX - gRadius + fontSize / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1394 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1395
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1396 labelLeft = keyMinTextLeft;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1397 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1398
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1399 var lineX = new Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1400 var lineY = new Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1401
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1402 var bendRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1403 var keyAngle = Math.atan((textY - centerY) / (labelLeft - centerX));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1404 var arcAngle;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1405
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1406 if ( keyAngle < 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1407 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1408 keyAngle += Math.PI;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1409 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1410
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1411 if ( keyMinAngle == 0 \|\| angle < keyMinAngle )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1412 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1413 keyMinAngle = angle;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1414 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1415
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1416 if ( angle > Math.PI && keyMinAngle > Math.PI )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1417 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1418 // allow lines to come underneath the chart
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1419
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1420 angle -= Math.PI * 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1421 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1422
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1423 lineX.push(Math.cos(angle) * gRadius);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1424 lineY.push(Math.sin(angle) * gRadius);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1425
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1426 if ( angle < keyAngle && textY > centerY + Math.sin(angle) * (gRadius + buffer * (currentKey - 1) / (keys + 1) / 2 + buffer / 2) )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1427 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1428 bendRadius = gRadius + buffer - buffer * currentKey / (keys + 1) / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1429 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1430 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1431 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1432 bendRadius = gRadius + buffer * currentKey / (keys + 1) / 2 + buffer / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1433 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1434
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1435 var outside =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1436 Math.sqrt
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1437 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1438 Math.pow(labelLeft - centerX, 2) +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1439 Math.pow(textY - centerY, 2)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1440 ) > bendRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1441
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1442 if ( ! outside )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1443 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1444 arcAngle = Math.asin((textY - centerY) / bendRadius);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1445
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1446 keyMinTextLeft = min(keyMinTextLeft, centerX + bendRadius * Math.cos(arcAngle) - fontSize / 2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1447
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1448 if ( labelLeft < textLeft && textLeft > centerX + bendRadius * Math.cos(arcAngle) )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1449 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1450 lineX.push(textLeft - centerX);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1451 lineY.push(textY - centerY);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1452 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1453 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1454 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1455 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1456 keyMinTextLeft = min(keyMinTextLeft, labelLeft - fontSize / 2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1457
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1458 if ( angle < keyAngle )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1459 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1460 // flip everything over y = x
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1461 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1462 arcAngle = Math.PI / 2 - keyLineAngle
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1463 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1464 Math.PI / 2 - angle,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1465 Math.PI / 2 - keyAngle,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1466 bendRadius,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1467 textY - centerY,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1468 labelLeft - centerX,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1469 lineY,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1470 lineX
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1471 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1472
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1473 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1474 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1475 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1476 arcAngle = keyLineAngle
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1477 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1478 angle,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1479 keyAngle,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1480 bendRadius,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1481 labelLeft - centerX,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1482 textY - centerY,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1483 lineX,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1484 lineY
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1485 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1486 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1487 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1488
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1489 if ( labelLeft > centerX + bendRadius * Math.cos(arcAngle) \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1490 textY > centerY + bendRadius * Math.sin(arcAngle) + .01)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1491 // if ( outside \|\| )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1492 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1493 lineX.push(labelLeft - centerX);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1494 lineY.push(textY - centerY);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1495
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1496 if ( textLeft != labelLeft )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1497 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1498 lineX.push(textLeft - centerX);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1499 lineY.push(textY - centerY);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1500 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1501 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1502
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1503 context.globalAlpha = this.alphaWedge.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1504
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1505 if ( snapshotMode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1506 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1507 var labelSVG;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1508
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1509 if ( this == selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1510 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1511 labelSVG =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1512 this.getUnclassifiedText() +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1513 spacer() +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1514 this.getUnclassifiedPercentage();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1515 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1516 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1517 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1518 labelSVG = this.name + spacer() + this.getPercentage() + '%';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1519 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1520
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1521 svg +=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1522 '<rect fill="' + color + '" ' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1523 'x="' + boxLeft + '" y="' + offset +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1524 '" width="' + keySize + '" height="' + keySize + '"/>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1525
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1526 if ( patternAlpha )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1527 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1528 svg +=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1529 '<rect fill="url(#hiddenPattern)" style="stroke:none" ' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1530 'x="' + boxLeft + '" y="' + offset +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1531 '" width="' + keySize + '" height="' + keySize + '"/>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1532 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1533
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1534 svg +=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1535 '<path class="line' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1536 (highlight ? ' highlight' : '') +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1537 '" d="M ' + (lineX[0] + centerX) + ',' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1538 (lineY[0] + centerY);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1539
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1540 if ( angle != arcAngle )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1541 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1542 svg +=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1543 ' L ' + (centerX + bendRadius * Math.cos(angle)) + ',' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1544 (centerY + bendRadius * Math.sin(angle)) +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1545 ' A ' + bendRadius + ',' + bendRadius + ' 0 ' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1546 '0,' + (angle > arcAngle ? '0' : '1') + ' ' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1547 (centerX + bendRadius * Math.cos(arcAngle)) + ',' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1548 (centerY + bendRadius * Math.sin(arcAngle));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1549 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1550
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1551 for ( var i = 1; i < lineX.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1552 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1553 svg +=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1554 ' L ' + (centerX + lineX[i]) + ',' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1555 (centerY + lineY[i]);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1556 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1557
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1558 svg += '"/>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1559
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1560 if ( highlight )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1561 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1562 if ( this.searchResultChildren() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1563 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1564 labelSVG = labelSVG + searchResultString(this.searchResultChildren());
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1565 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1566
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1567 drawBubbleSVG
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1568 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1569 boxLeft - keyBuffer - keyNameWidth - fontSize / 2,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1570 textY - fontSize,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1571 keyNameWidth + fontSize,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1572 fontSize * 2,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1573 fontSize,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1574 0
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1575 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1576
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1577 if ( this.isSearchResult )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1578 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1579 drawSearchHighlights
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1580 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1581 label,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1582 boxLeft - keyBuffer - keyNameWidth,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1583 textY,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1584 0
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1585 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1586 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1587 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1588
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1589 svg += svgText(labelSVG, boxLeft - keyBuffer, textY, 'end', bold, colorText);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1590 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1591 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1592 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1593 context.fillStyle = color;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1594 context.translate(-centerX, -centerY);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1595 context.strokeStyle = 'black';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1596 context.globalAlpha = 1;//this.alphaWedge.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1597
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1598 context.fillRect(boxLeft, offset, keySize, keySize);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1599
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1600 if ( patternAlpha )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1601 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1602 context.globalAlpha = patternAlpha;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1603 context.fillStyle = hiddenPattern;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1604
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1605 // make clipping box for Firefox performance
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1606 context.beginPath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1607 context.moveTo(boxLeft, offset);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1608 context.lineTo(boxLeft + keySize, offset);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1609 context.lineTo(boxLeft + keySize, offset + keySize);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1610 context.lineTo(boxLeft, offset + keySize);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1611 context.closePath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1612 context.save();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1613 context.clip();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1614
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1615 context.fillRect(boxLeft, offset, keySize, keySize);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1616 context.fillRect(boxLeft, offset, keySize, keySize);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1617
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1618 context.restore(); // remove clipping region
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1619 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1620
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1621 if ( highlight )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1622 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1623 this.setHighlightStyle();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1624 context.fillRect(boxLeft, offset, keySize, keySize);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1625 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1626 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1627 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1628 context.lineWidth = thinLineWidth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1629 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1630
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1631 context.strokeRect(boxLeft, offset, keySize, keySize);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1632
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1633 if ( lineX.length )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1634 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1635 context.beginPath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1636 context.moveTo(lineX[0] + centerX, lineY[0] + centerY);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1637
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1638 context.arc(centerX, centerY, bendRadius, angle, arcAngle, angle > arcAngle);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1639
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1640 for ( var i = 1; i < lineX.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1641 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1642 context.lineTo(lineX[i] + centerX, lineY[i] + centerY);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1643 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1644
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1645 context.globalAlpha = this == selectedNode ?
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1646 this.children[0].alphaWedge.current() :
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1647 this.alphaWedge.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1648 context.lineWidth = highlight ? highlightLineWidth : thinLineWidth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1649 context.stroke();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1650 context.globalAlpha = 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1651 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1652
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1653 if ( highlight )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1654 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1655 drawBubbleCanvas
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1656 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1657 boxLeft - keyBuffer - keyNameWidth - fontSize / 2,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1658 textY - fontSize,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1659 keyNameWidth + fontSize,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1660 fontSize * 2,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1661 fontSize,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1662 0
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1663 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1664
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1665 if ( this.isSearchResult )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1666 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1667 drawSearchHighlights
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1668 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1669 label,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1670 boxLeft - keyBuffer - keyNameWidth,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1671 textY,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1672 0
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1673 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1674 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1675 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1676
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1677 drawText(label, boxLeft - keyBuffer, offset + keySize / 2, 0, 'end', bold, colorText);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1678
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1679 context.translate(centerX, centerY);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1680 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1681
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1682 currentKey++;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1683 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1684
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1685 this.drawLabel = function(angle, bubble, bold, selected, radial)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1686 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1687 if ( context.globalAlpha == 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1688 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1689 return;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1690 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1691
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1692 var innerText;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1693 var label;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1694 var radius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1695
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1696 if ( radial )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1697 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1698 radius = (this.radiusInner.current() + 1) * gRadius / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1699 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1700 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1701 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1702 radius = this.labelRadius.current() * gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1703 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1704
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1705 if ( radial && (selected \|\| bubble ) )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1706 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1707 var percentage = this.getPercentage();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1708 innerText = percentage + '%';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1709 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1710
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1711 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1712 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1713 ! radial &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1714 this != selectedNode &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1715 ! bubble &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1716 ( !zoomOut \|\| this != selectedNodeLast)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1717 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1718 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1719 label = this.shortenLabel();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1720 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1721 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1722 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1723 label = this.name;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1724 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1725
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1726 var flipped = drawTextPolar
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1727 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1728 label,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1729 innerText,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1730 angle,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1731 radius,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1732 radial,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1733 bubble,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1734 bold,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1735 // this.isSearchResult && this.shouldAddSearchResultsString() && (!selected \|\| this == selectedNode \|\| highlight),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1736 this.isSearchResult && (!selected \|\| this == selectedNode \|\| bubble),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1737 (this.hideAlone \|\| !selected \|\| this == selectedNode ) ? this.searchResultChildren() : 0
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1738 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1739
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1740 var depth = this.getDepth() - selectedNode.getDepth() + 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1741
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1742 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1743 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1744 ! radial &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1745 ! bubble &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1746 this != selectedNode &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1747 this.angleEnd.end != this.angleStart.end &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1748 nLabelOffsets[depth - 2] > 2 &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1749 this.labelWidth.current() > (this.angleEnd.end - this.angleStart.end) * Math.abs(radius) &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1750 ! ( zoomOut && this == selectedNodeLast ) &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1751 this.labelRadius.end > 0
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1752 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1753 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1754 // name extends beyond wedge; draw tick mark towards the central
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1755 // radius for easier identification
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1756
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1757 var radiusCenter = compress ?
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1758 (compressedRadii[depth - 1] + compressedRadii[depth - 2]) / 2 :
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1759 (depth - .5) * nodeRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1760
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1761 if ( this.labelRadius.end > radiusCenter )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1762 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1763 if ( flipped )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1764 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1765 drawTick(radius - tickLength * 1.4 , tickLength, angle);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1766 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1767 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1768 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1769 drawTick(radius - tickLength * 1.7, tickLength, angle);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1770 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1771 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1772 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1773 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1774 if ( flipped )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1775 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1776 drawTick(radius + tickLength * .7, tickLength, angle);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1777 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1778 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1779 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1780 drawTick(radius + tickLength * .4, tickLength, angle);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1781 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1782 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1783 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1784 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1785
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1786 this.drawLines = function(angleStart, angleEnd, radiusInner, drawRadial, selected)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1787 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1788 if ( snapshotMode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1789 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1790 if ( this != selectedNode)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1791 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1792 if ( angleEnd == angleStart + Math.PI * 2 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1793 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1794 // fudge to prevent overlap, which causes arc ambiguity
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1795 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1796 angleEnd -= .1 / gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1797 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1798
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1799 var longArc = angleEnd - angleStart > Math.PI ? 1 : 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1800
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1801 var x1 = centerX + radiusInner * Math.cos(angleStart);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1802 var y1 = centerY + radiusInner * Math.sin(angleStart);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1803
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1804 var x2 = centerX + gRadius * Math.cos(angleStart);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1805 var y2 = centerY + gRadius * Math.sin(angleStart);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1806
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1807 var x3 = centerX + gRadius * Math.cos(angleEnd);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1808 var y3 = centerY + gRadius * Math.sin(angleEnd);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1809
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1810 var x4 = centerX + radiusInner * Math.cos(angleEnd);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1811 var y4 = centerY + radiusInner * Math.sin(angleEnd);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1812
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1813 if ( this.alphaArc.end )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1814 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1815 var dArray =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1816 [
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1817 " M ", x4, ",", y4,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1818 " A ", radiusInner, ",", radiusInner, " 0 ", longArc,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1819 " 0 ", x1, ",", y1
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1820 ];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1821
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1822 svg += '<path class="line" d="' + dArray.join('') + '"/>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1823 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1824
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1825 if ( drawRadial && this.alphaLine.end )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1826 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1827 svg += '<line x1="' + x3 + '" y1="' + y3 + '" x2="' + x4 + '" y2="' + y4 + '"/>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1828 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1829 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1830 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1831 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1832 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1833 context.lineWidth = thinLineWidth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1834 context.strokeStyle = 'black';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1835 context.beginPath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1836 context.arc(0, 0, radiusInner, angleStart, angleEnd, false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1837 context.globalAlpha = this.alphaArc.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1838 context.stroke();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1839
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1840 if ( drawRadial )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1841 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1842 var x1 = radiusInner * Math.cos(angleEnd);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1843 var y1 = radiusInner * Math.sin(angleEnd);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1844 var x2 = gRadius * Math.cos(angleEnd);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1845 var y2 = gRadius * Math.sin(angleEnd);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1846
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1847 context.beginPath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1848 context.moveTo(x1, y1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1849 context.lineTo(x2, y2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1850
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1851 // if ( this.getCollapse() )//( selected && this != selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1852 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1853 context.globalAlpha = this.alphaLine.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1854 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1855
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1856 context.stroke();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1857 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1858 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1859 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1860
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1861 this.drawMap = function(child)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1862 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1863 if ( this.parent )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1864 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1865 this.parent.drawMap(child);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1866 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1867
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1868 if ( this.getCollapse() && this != child \|\| this == focusNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1869 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1870 return;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1871 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1872
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1873 var angleStart =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1874 (child.baseMagnitude - this.baseMagnitude) / this.magnitude * Math.PI * 2 +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1875 rotationOffset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1876 var angleEnd =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1877 (child.baseMagnitude - this.baseMagnitude + child.magnitude) /
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1878 this.magnitude * Math.PI * 2 +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1879 rotationOffset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1880
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1881 var box = this.getMapPosition();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1882
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1883 context.save();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1884 context.fillStyle = 'black';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1885 context.textAlign = 'end';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1886 context.textBaseline = 'middle';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1887
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1888 var textX = box.x - mapRadius - mapBuffer;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1889 var percentage = getPercentage(child.magnitude / this.magnitude);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1890
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1891 var highlight = this == selectedNode \|\| this == highlightedNode;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1892
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1893 if ( highlight )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1894 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1895 context.font = fontBold;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1896 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1897 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1898 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1899 context.font = fontNormal;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1900 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1901
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1902 context.fillText(percentage + '% of', textX, box.y - mapRadius / 3);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1903 context.fillText(this.name, textX, box.y + mapRadius / 3);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1904
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1905 if ( highlight )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1906 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1907 context.font = fontNormal;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1908 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1909
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1910 if ( this == highlightedNode && this != selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1911 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1912 context.fillStyle = 'rgb(245, 245, 245)';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1913 // context.fillStyle = 'rgb(200, 200, 200)';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1914 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1915 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1916 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1917 context.fillStyle = 'rgb(255, 255, 255)';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1918 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1919
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1920 context.beginPath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1921 context.arc(box.x, box.y, mapRadius, 0, Math.PI * 2, true);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1922 context.closePath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1923 context.fill();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1924
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1925 if ( this == selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1926 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1927 context.lineWidth = 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1928 context.fillStyle = 'rgb(100, 100, 100)';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1929 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1930 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1931 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1932 if ( this == highlightedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1933 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1934 context.lineWidth = .2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1935 context.fillStyle = 'rgb(190, 190, 190)';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1936 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1937 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1938 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1939 context.lineWidth = .2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1940 context.fillStyle = 'rgb(200, 200, 200)';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1941 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1942 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1943
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1944 var maxDepth = this.getMaxDepth();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1945
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1946 if ( ! compress && maxDepth > maxPossibleDepth + this.getDepth() - 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1947 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1948 maxDepth = maxPossibleDepth + this.getDepth() - 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1949 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1950
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1951 if ( this.getDepth() < selectedNode.getDepth() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1952 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1953 if ( child.getDepth() - 1 >= maxDepth )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1954 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1955 maxDepth = child.getDepth();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1956 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1957 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1958
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1959 var radiusInner;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1960
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1961 if ( compress )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1962 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1963 radiusInner = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1964 // Math.atan(child.getDepth() - this.getDepth()) /
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1965 // Math.PI * 2 * .9;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1966 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1967 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1968 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1969 radiusInner =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1970 (child.getDepth() - this.getDepth()) /
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1971 (maxDepth - this.getDepth() + 1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1972 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1973
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1974 context.stroke();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1975 context.beginPath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1976
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1977 if ( radiusInner == 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1978 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1979 context.moveTo(box.x, box.y);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1980 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1981 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1982 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1983 context.arc(box.x, box.y, mapRadius * radiusInner, angleEnd, angleStart, true);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1984 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1985
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1986 context.arc(box.x, box.y, mapRadius, angleStart, angleEnd, false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1987 context.closePath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1988 context.fill();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1989
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1990 if ( this == highlightedNode && this != selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1991 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1992 context.lineWidth = 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1993 context.stroke();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1994 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1995
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1996 context.restore();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1997 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1998
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	1999 this.drawReferenceRings = function(childRadiusInner)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2000 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2001 if ( snapshotMode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2002 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2003 svg +=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2004 '<circle cx="' + centerX + '" cy="' + centerY +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2005 '" r="' + childRadiusInner + '"/>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2006 svg +=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2007 '<circle cx="' + centerX + '" cy="' + centerY +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2008 '" r="' + gRadius + '"/>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2009 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2010 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2011 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2012 context.globalAlpha = 1 - this.alphaLine.current();//this.getUncollapsed().alphaLine.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2013 context.beginPath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2014 context.arc(0, 0, childRadiusInner, 0, Math.PI * 2, false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2015 context.stroke();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2016 context.beginPath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2017 context.arc(0, 0, gRadius, 0, Math.PI * 2, false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2018 context.stroke();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2019 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2020 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2021
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2022 this.getCollapse = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2023 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2024 return (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2025 collapse &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2026 this.collapse &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2027 this.depth != maxAbsoluteDepth
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2028 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2029 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2030
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2031 this.getDepth = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2032 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2033 if ( collapse )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2034 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2035 return this.depthCollapsed;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2036 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2037 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2038 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2039 return this.depth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2040 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2041 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2042
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2043 this.getMagnitude = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2044 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2045 return this.attributes[magnitudeIndex][currentDataset];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2046 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2047
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2048 this.getMapPosition = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2049 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2050 return {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2051 x : (details.offsetLeft + details.clientWidth - mapRadius),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2052 y : ((focusNode.getDepth() - this.getDepth()) *
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2053 (mapBuffer + mapRadius * 2) - mapRadius) +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2054 details.clientHeight + details.offsetTop
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2055 };
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2056 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2057
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2058 this.getMaxDepth = function(limit)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2059 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2060 var max;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2061
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2062 if ( collapse )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2063 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2064 return this.maxDepthCollapsed;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2065 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2066 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2067 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2068 if ( this.maxDepth > maxAbsoluteDepth )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2069 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2070 return maxAbsoluteDepth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2071 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2072 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2073 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2074 return this.maxDepth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2075 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2076 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2077 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2078
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2079 this.getData = function(index, summary)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2080 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2081 var files = new Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2082
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2083 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2084 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2085 this.attributes[index] != null &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2086 this.attributes[index][currentDataset] != null &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2087 this.attributes[index][currentDataset] != ''
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2088 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2089 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2090 files.push
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2091 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2092 document.location +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2093 '.files/' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2094 this.attributes[index][currentDataset]
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2095 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2096 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2097
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2098 if ( summary )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2099 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2100 for ( var i = 0; i < this.children.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2101 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2102 files = files.concat(this.children[i].getData(index, true));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2103 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2104 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2105
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2106 return files;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2107 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2108
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2109 this.getList = function(index, summary)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2110 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2111 var list;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2112
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2113 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2114 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2115 this.attributes[index] != null &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2116 this.attributes[index][currentDataset] != null
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2117 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2118 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2119 list = this.attributes[index][currentDataset];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2120 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2121 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2122 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2123 list = new Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2124 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2125
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2126 if ( summary )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2127 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2128 for ( var i = 0; i < this.children.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2129 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2130 list = list.concat(this.children[i].getList(index, true));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2131 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2132 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2133
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2134 return list;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2135 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2136
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2137 this.getParent = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2138 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2139 // returns parent, accounting for collapsing or 0 if doesn't exist
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2140
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2141 var parent = this.parent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2142
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2143 while ( parent != 0 && parent.getCollapse() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2144 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2145 parent = parent.parent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2146 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2147
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2148 return parent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2149 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2150
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2151 this.getPercentage = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2152 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2153 return getPercentage(this.magnitude / selectedNode.magnitude);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2154 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2155
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2156 this.getUnclassifiedPercentage = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2157 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2158 if ( this.children.length )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2159 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2160 var lastChild = this.children[this.children.length - 1];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2161
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2162 return getPercentage
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2163 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2164 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2165 this.baseMagnitude +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2166 this.magnitude -
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2167 lastChild.magnitude -
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2168 lastChild.baseMagnitude
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2169 ) / this.magnitude
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2170 ) + '%';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2171 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2172 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2173 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2174 return '100%';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2175 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2176 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2177
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2178 this.getUnclassifiedText = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2179 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2180 return '[other '+ this.name + ']';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2181 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2182
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2183 this.getUncollapsed = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2184 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2185 // recurse through collapsed children until uncollapsed node is found
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2186
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2187 if ( this.getCollapse() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2188 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2189 return this.children[0].getUncollapsed();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2190 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2191 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2192 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2193 return this;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2194 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2195 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2196
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2197 this.hasChildren = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2198 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2199 return this.children.length && this.depth < maxAbsoluteDepth && this.magnitude;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2200 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2201
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2202 this.hasParent = function(parent)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2203 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2204 if ( this.parent )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2205 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2206 if ( this.parent == parent )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2207 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2208 return true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2209 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2210 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2211 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2212 return this.parent.hasParent(parent);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2213 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2214 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2215 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2216 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2217 return false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2218 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2219 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2220
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2221 this.maxVisibleDepth = function(maxDepth)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2222 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2223 var childInnerRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2224 var depth = this.getDepth() - selectedNode.getDepth() + 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2225 var currentMaxDepth = depth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2226
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2227 if ( this.hasChildren() && depth < maxDepth)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2228 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2229 var lastChild = this.children[this.children.length - 1];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2230
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2231 if ( this.name == 'Pseudomonadaceae' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2232 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2233 var x = 3;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2234 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2235
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2236 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2237 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2238 lastChild.baseMagnitude + lastChild.magnitude <
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2239 this.baseMagnitude + this.magnitude
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2240 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2241 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2242 currentMaxDepth++;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2243 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2244
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2245 if ( compress )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2246 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2247 childInnerRadius = compressedRadii[depth - 1];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2248 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2249 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2250 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2251 childInnerRadius = (depth) / maxDepth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2252 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2253
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2254 for ( var i = 0; i < this.children.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2255 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2256 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2257 (//true \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2258 this.children[i].magnitude *
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2259 angleFactor *
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2260 (childInnerRadius + 1) *
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2261 gRadius >=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2262 minWidth()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2263 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2264 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2265 var childMaxDepth = this.children[i].maxVisibleDepth(maxDepth);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2266
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2267 if ( childMaxDepth > currentMaxDepth )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2268 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2269 currentMaxDepth = childMaxDepth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2270 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2271 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2272 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2273 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2274
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2275 return currentMaxDepth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2276 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2277
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2278 this.resetLabelWidth = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2279 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2280 var nameWidthOld = this.nameWidth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2281
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2282 if ( true \|\| ! this.radial )//&& fontSize != fontSizeLast )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2283 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2284 var dim = context.measureText(this.name);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2285 this.nameWidth = dim.width;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2286 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2287
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2288 if ( fontSize != fontSizeLast && this.labelWidth.end == nameWidthOld * labelWidthFudge )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2289 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2290 // font size changed; adjust start of tween to match
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2291
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2292 this.labelWidth.start = this.nameWidth * labelWidthFudge;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2293 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2294 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2295 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2296 this.labelWidth.start = this.labelWidth.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2297 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2298
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2299 this.labelWidth.end = this.nameWidth * labelWidthFudge;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2300 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2301
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2302 this.restrictLabelWidth = function(width)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2303 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2304 if ( width < this.labelWidth.end )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2305 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2306 this.labelWidth.end = width;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2307 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2308 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2309
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2310 this.search = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2311 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2312 this.isSearchResult = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2313 this.searchResults = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2314
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2315 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2316 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2317 ! this.getCollapse() &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2318 search.value != '' &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2319 this.name.toLowerCase().indexOf(search.value.toLowerCase()) != -1
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2320 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2321 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2322 this.isSearchResult = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2323 this.searchResults = 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2324 nSearchResults++;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2325 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2326
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2327 for ( var i = 0; i < this.children.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2328 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2329 this.searchResults += this.children[i].search();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2330 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2331
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2332 return this.searchResults;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2333 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2334
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2335 this.searchResultChildren = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2336 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2337 if ( this.isSearchResult )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2338 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2339 return this.searchResults - 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2340 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2341 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2342 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2343 return this.searchResults;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2344 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2345 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2346
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2347 this.setDepth = function(depth, depthCollapsed)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2348 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2349 this.depth = depth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2350 this.depthCollapsed = depthCollapsed;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2351
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2352 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2353 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2354 this.children.length == 1 &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2355 // this.magnitude > 0 &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2356 this.children[0].magnitude == this.magnitude &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2357 ( head.children.length > 1 \|\| this.children[0].children.length )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2358 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2359 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2360 this.collapse = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2361 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2362 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2363 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2364 this.collapse = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2365 depthCollapsed++;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2366 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2367
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2368 for ( var i = 0; i < this.children.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2369 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2370 this.children[i].setDepth(depth + 1, depthCollapsed);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2371 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2372 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2373
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2374 this.setHighlightStyle = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2375 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2376 context.lineWidth = highlightLineWidth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2377
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2378 if ( this.hasChildren() \|\| this != focusNode \|\| this != highlightedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2379 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2380 context.strokeStyle = 'black';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2381 context.fillStyle = "rgba(255, 255, 255, .3)";
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2382 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2383 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2384 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2385 context.strokeStyle = 'rgb(90,90,90)';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2386 context.fillStyle = "rgba(155, 155, 155, .3)";
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2387 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2388 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2389
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2390 this.setLabelWidth = function(node)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2391 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2392 if ( ! shorten \|\| this.radial )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2393 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2394 return; // don't need to set width
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2395 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2396
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2397 if ( node.hide )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2398 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2399 alert('wtf');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2400 return;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2401 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2402
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2403 var angle = (this.angleStart.end + this.angleEnd.end) / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2404 var a; // angle difference
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2405
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2406 if ( node == selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2407 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2408 a = Math.abs(angle - node.angleOther);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2409 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2410 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2411 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2412 a = Math.abs(angle - (node.angleStart.end + node.angleEnd.end) / 2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2413 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2414
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2415 if ( a == 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2416 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2417 return;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2418 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2419
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2420 if ( a > Math.PI )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2421 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2422 a = 2 * Math.PI - a;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2423 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2424
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2425 if ( node.radial \|\| node == selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2426 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2427 var nodeLabelRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2428
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2429 if ( node == selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2430 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2431 // radial 'other' label
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2432
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2433 nodeLabelRadius = (node.children[0].radiusInner.end + 1) / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2434 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2435 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2436 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2437 nodeLabelRadius = (node.radiusInner.end + 1) / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2438 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2439
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2440 if ( a < Math.PI / 2 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2441 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2442 var r = this.labelRadius.end * gRadius + .5 * fontSize
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2443 var hypotenuse = r / Math.cos(a);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2444 var opposite = r * Math.tan(a);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2445 var fontRadius = .8 * fontSize;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2446
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2447 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2448 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2449 nodeLabelRadius * gRadius < hypotenuse &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2450 this.labelWidth.end / 2 + fontRadius > opposite
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2451 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2452 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2453 this.labelWidth.end = 2 * (opposite - fontRadius);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2454 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2455 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2456 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2457 else if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2458 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2459 this.labelRadius.end == node.labelRadius.end &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2460 a < Math.PI / 4
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2461 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2462 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2463 // same radius with small angle; use circumferential approximation
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2464
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2465 var dist = a * this.labelRadius.end * gRadius - fontSize * (1 - a * 4 / Math.PI) * 1.3;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2466
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2467 if ( this.labelWidth.end < dist )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2468 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2469 node.restrictLabelWidth((dist - this.labelWidth.end / 2) * 2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2470 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2471 else if ( node.labelWidth.end < dist )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2472 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2473 this.restrictLabelWidth((dist - node.labelWidth.end / 2) * 2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2474 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2475 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2476 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2477 // both labels reach halfway point; restrict both
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2478
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2479 this.labelWidth.end = dist;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2480 node.labelWidth.end = dist
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2481 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2482 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2483 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2484 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2485 var r1 = this.labelRadius.end * gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2486 var r2 = node.labelRadius.end * gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2487
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2488 // first adjust the radii to account for the height of the font by shifting them
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2489 // toward each other
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2490 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2491 var fontFudge = .35 * fontSize;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2492 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2493 if ( this.labelRadius.end < node.labelRadius.end )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2494 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2495 r1 += fontFudge;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2496 r2 -= fontFudge;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2497 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2498 else if ( this.labelRadius.end > node.labelRadius.end )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2499 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2500 r1 -= fontFudge;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2501 r2 += fontFudge;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2502 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2503 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2504 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2505 r1 -= fontFudge;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2506 r2 -= fontFudge;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2507 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2508
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2509 var r1s = r1 * r1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2510 var r2s = r2 * r2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2511
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2512 // distance between the centers of the two labels
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2513 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2514 var dist = Math.sqrt(r1s + r2s - 2 * r1 * r2 * Math.cos(a));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2515
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2516 // angle at our label center between our radius and the line to the other label center
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2517 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2518 var b = Math.acos((r1s + dist * dist - r2s) / (2 * r1 * dist));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2519
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2520 // distance from our label center to the intersection of the two tangents
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2521 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2522 var l1 = Math.sin(a + b - Math.PI / 2) * dist / Math.sin(Math.PI - a);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2523
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2524 // distance from other label center the the intersection of the two tangents
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2525 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2526 var l2 = Math.sin(Math.PI / 2 - b) * dist / Math.sin(Math.PI - a);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2527
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2528 l1 = Math.abs(l1) - .4 * fontSize;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2529 l2 = Math.abs(l2) - .4 * fontSize;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2530 /*
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2531 // amount to shorten the distances because of the height of the font
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2532 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2533 var l3 = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2534 var fontRadius = fontSize * .55;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2535 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2536 if ( l1 < 0 \|\| l2 < 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2537 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2538 var l4 = fontRadius / Math.tan(a);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2539 l1 = Math.abs(l1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2540 l2 = Math.abs(l2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2541
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2542 l1 -= l4;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2543 l2 -= l4;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2544 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2545 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2546 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2547 var c = Math.PI - a;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2548
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2549 l3 = fontRadius * Math.tan(c / 2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2550 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2551 */
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2552 if ( this.labelWidth.end / 2 > l1 && node.labelWidth.end / 2 > l2 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2553 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2554 // shorten the farthest one from the intersection
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2555
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2556 if ( l1 > l2 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2557 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2558 this.restrictLabelWidth(2 * (l1));// - l3 - fontRadius));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2559 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2560 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2561 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2562 node.restrictLabelWidth(2 * (l2));// - l3 - fontRadius));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2563 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2564 }/*
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2565 else if ( this.labelWidth.end / 2 > l1 + l3 && node.labelWidth.end / 2 > l2 - l3 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2566 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2567 node.restrictLabelWidth(2 * (l2 - l3));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2568 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2569 else if ( this.labelWidth.end / 2 > l1 - l3 && node.labelWidth.end / 2 > l2 + l3 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2570 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2571 this.restrictLabelWidth(2 * (l1 - l3));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2572 }*/
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2573 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2574 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2575
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2576 this.setMagnitudes = function(baseMagnitude)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2577 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2578 this.magnitude = this.getMagnitude();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2579 this.baseMagnitude = baseMagnitude;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2580
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2581 for ( var i = 0; i < this.children.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2582 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2583 this.children[i].setMagnitudes(baseMagnitude);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2584 baseMagnitude += this.children[i].magnitude;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2585 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2586
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2587 this.maxChildMagnitude = baseMagnitude;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2588 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2589
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2590 this.setMaxDepths = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2591 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2592 this.maxDepth = this.depth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2593 this.maxDepthCollapsed = this.depthCollapsed;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2594
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2595 for ( i in this.children )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2596 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2597 var child = this.children[i];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2598
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2599 child.setMaxDepths();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2600
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2601 if ( child.maxDepth > this.maxDepth )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2602 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2603 this.maxDepth = child.maxDepth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2604 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2605
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2606 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2607 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2608 child.maxDepthCollapsed > this.maxDepthCollapsed &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2609 (child.depth <= maxAbsoluteDepth \|\| maxAbsoluteDepth == 0)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2610 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2611 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2612 this.maxDepthCollapsed = child.maxDepthCollapsed;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2613 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2614 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2615 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2616
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2617 this.setTargetLabelRadius = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2618 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2619 var depth = this.getDepth() - selectedNode.getDepth() + 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2620 var index = depth - 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2621 var labelOffset = labelOffsets[index];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2622
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2623 if ( this.radial )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2624 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2625 //this.labelRadius.setTarget((this.radiusInner.end + 1) / 2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2626 var max =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2627 depth == maxDisplayDepth ?
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2628 1 :
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2629 compressedRadii[index + 1];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2630
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2631 this.labelRadius.setTarget((compressedRadii[index] + max) / 2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2632 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2633 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2634 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2635 var radiusCenter;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2636 var width;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2637
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2638 if ( compress )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2639 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2640 if ( nLabelOffsets[index] > 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2641 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2642 this.labelRadius.setTarget
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2643 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2644 lerp
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2645 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2646 labelOffset + .75,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2647 0,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2648 nLabelOffsets[index] + .5,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2649 compressedRadii[index],
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2650 compressedRadii[index + 1]
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2651 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2652 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2653 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2654 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2655 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2656 this.labelRadius.setTarget((compressedRadii[index] + compressedRadii[index + 1]) / 2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2657 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2658 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2659 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2660 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2661 radiusCenter =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2662 nodeRadius * (depth - 1) +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2663 nodeRadius / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2664 width = nodeRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2665
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2666 this.labelRadius.setTarget
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2667 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2668 radiusCenter + width * ((labelOffset + 1) / (nLabelOffsets[index] + 1) - .5)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2669 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2670 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2671 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2672
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2673 if ( ! this.hide && ! this.keyed && nLabelOffsets[index] )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2674 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2675 // check last and first labels in each track for overlap
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2676
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2677 for ( var i = 0; i < maxDisplayDepth - 1; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2678 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2679 for ( var j = 0; j <= nLabelOffsets[i]; j++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2680 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2681 var last = labelLastNodes[i][j];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2682 var first = labelFirstNodes[i][j];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2683
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2684 if ( last )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2685 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2686 if ( j == nLabelOffsets[i] )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2687 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2688 // last is radial
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2689 this.setLabelWidth(last);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2690 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2691 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2692 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2693 last.setLabelWidth(this);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2694 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2695 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2696
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2697 if ( first )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2698 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2699 if ( j == nLabelOffsets[i] )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2700 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2701 this.setLabelWidth(first);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2702 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2703 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2704 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2705 first.setLabelWidth(this);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2706 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2707 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2708 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2709 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2710
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2711 if ( selectedNode.canDisplayLabelOther )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2712 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2713 this.setLabelWidth(selectedNode); // in case there is an 'other' label
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2714 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2715
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2716 if ( this.radial )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2717 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2718 // use the last 'track' of this depth for radial
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2719
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2720 labelLastNodes[index][nLabelOffsets[index]] = this;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2721
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2722 if ( labelFirstNodes[index][nLabelOffsets[index]] == 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2723 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2724 labelFirstNodes[index][nLabelOffsets[index]] = this;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2725 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2726 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2727 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2728 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2729 labelLastNodes[index][labelOffset] = this;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2730
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2731 // update offset
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2732
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2733 labelOffsets[index] += 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2734
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2735 if ( labelOffsets[index] > nLabelOffsets[index] )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2736 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2737 labelOffsets[index] -= nLabelOffsets[index];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2738
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2739 if ( !(nLabelOffsets[index] & 1) )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2740 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2741 labelOffsets[index]--;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2742 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2743 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2744 else if ( labelOffsets[index] == nLabelOffsets[index] )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2745 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2746 labelOffsets[index] -= nLabelOffsets[index];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2747
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2748 if ( false && !(nLabelOffsets[index] & 1) )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2749 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2750 labelOffsets[index]++;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2751 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2752 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2753
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2754 if ( labelFirstNodes[index][labelOffset] == 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2755 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2756 labelFirstNodes[index][labelOffset] = this;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2757 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2758 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2759 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2760 else if ( this.hide )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2761 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2762 this.labelWidth.end = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2763 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2764 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2765
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2766 this.setTargets = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2767 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2768 if ( this == selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2769 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2770 this.setTargetsSelected
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2771 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2772 0,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2773 1,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2774 lightnessBase,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2775 false,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2776 false
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2777 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2778 return;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2779 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2780
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2781 var depthRelative = this.getDepth() - selectedNode.getDepth();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2782
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2783 var parentOfSelected = selectedNode.hasParent(this);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2784 /* (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2785 // ! this.getCollapse() &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2786 this.baseMagnitude <= selectedNode.baseMagnitude &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2787 this.baseMagnitude + this.magnitude >=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2788 selectedNode.baseMagnitude + selectedNode.magnitude
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2789 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2790 */
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2791 if ( parentOfSelected )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2792 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2793 this.resetLabelWidth();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2794 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2795 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2796 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2797 //context.font = fontNormal;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2798 var dim = context.measureText(this.name);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2799 this.nameWidth = dim.width;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2800 //this.labelWidth.setTarget(this.labelWidth.end);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2801 this.labelWidth.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2802 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2803
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2804 // set angles
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2805 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2806 if ( this.baseMagnitude <= selectedNode.baseMagnitude )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2807 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2808 this.angleStart.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2809 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2810 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2811 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2812 this.angleStart.setTarget(Math.PI * 2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2813 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2814 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2815 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2816 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2817 parentOfSelected \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2818 this.baseMagnitude + this.magnitude >=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2819 selectedNode.baseMagnitude + selectedNode.magnitude
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2820 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2821 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2822 this.angleEnd.setTarget(Math.PI * 2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2823 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2824 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2825 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2826 this.angleEnd.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2827 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2828
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2829 // children
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2830 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2831 for ( var i = 0; i < this.children.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2832 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2833 this.children[i].setTargets();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2834 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2835
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2836 if ( this.getDepth() <= selectedNode.getDepth() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2837 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2838 // collapse in
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2839
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2840 this.radiusInner.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2841
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2842 if ( parentOfSelected )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2843 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2844 this.labelRadius.setTarget
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2845 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2846 (depthRelative) *
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2847 historySpacingFactor * fontSize / gRadius
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2848 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2849 //this.scale.setTarget(1 - (selectedNode.getDepth() - this.getDepth()) / 18); // TEMP
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2850 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2851 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2852 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2853 this.labelRadius.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2854 //this.scale.setTarget(1); // TEMP
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2855 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2856 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2857 else if ( depthRelative + 1 > maxDisplayDepth )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2858 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2859 // collapse out
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2860
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2861 this.radiusInner.setTarget(1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2862 this.labelRadius.setTarget(1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2863 //this.scale.setTarget(1); // TEMP
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2864 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2865 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2866 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2867 // don't collapse
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2868
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2869 if ( compress )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2870 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2871 this.radiusInner.setTarget(compressedRadii[depthRelative - 1]);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2872 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2873 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2874 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2875 this.radiusInner.setTarget(nodeRadius * (depthRelative));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2876 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2877
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2878 //this.scale.setTarget(1); // TEMP
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2879
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2880 if ( this == selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2881 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2882 this.labelRadius.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2883 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2884 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2885 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2886 if ( compress )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2887 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2888 this.labelRadius.setTarget
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2889 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2890 (compressedRadii[depthRelative - 1] + compressedRadii[depthRelative]) / 2
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2891 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2892 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2893 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2894 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2895 this.labelRadius.setTarget(nodeRadius * (depthRelative) + nodeRadius / 2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2896 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2897 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2898 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2899
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2900 // this.r.start = this.r.end;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2901 // this.g.start = this.g.end;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2902 // this.b.start = this.b.end;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2903
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2904 this.r.setTarget(255);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2905 this.g.setTarget(255);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2906 this.b.setTarget(255);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2907
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2908 this.alphaLine.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2909 this.alphaArc.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2910 this.alphaWedge.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2911 this.alphaPattern.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2912 this.alphaOther.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2913
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2914 if ( parentOfSelected && ! this.getCollapse() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2915 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2916 var alpha =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2917 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2918 1 -
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2919 (selectedNode.getDepth() - this.getDepth()) /
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2920 (Math.floor((compress ? compressedRadii[0] : nodeRadius) * gRadius / (historySpacingFactor * fontSize) - .5) + 1)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2921 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2922
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2923 if ( alpha < 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2924 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2925 alpha = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2926 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2927
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2928 this.alphaLabel.setTarget(alpha);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2929 this.radial = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2930 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2931 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2932 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2933 this.alphaLabel.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2934 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2935
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2936 this.hideAlonePrev = this.hideAlone;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2937 this.hidePrev = this.hide;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2938
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2939 if ( parentOfSelected )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2940 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2941 this.hideAlone = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2942 this.hide = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2943 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2944
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2945 if ( this.getParent() == selectedNode.getParent() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2946 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2947 this.hiddenEnd = null;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2948 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2949
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2950 this.radialPrev = this.radial;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2951 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2952
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2953 this.setTargetsSelected = function(hueMin, hueMax, lightness, hide, nextSiblingHidden)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2954 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2955 var collapse = this.getCollapse();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2956 var depth = this.getDepth() - selectedNode.getDepth() + 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2957 var canDisplayChildLabels = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2958 var lastChild;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2959
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2960 if ( this.hasChildren() )//&& ! hide )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2961 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2962 lastChild = this.children[this.children.length - 1];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2963 this.hideAlone = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2964 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2965 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2966 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2967 this.hideAlone = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2968 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2969
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2970 // set child wedges
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2971 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2972 for ( var i = 0; i < this.children.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2973 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2974 this.children[i].setTargetWedge();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2975
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2976 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2977 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2978 ! this.children[i].hide &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2979 ( collapse \|\| depth < maxDisplayDepth ) &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2980 this.depth < maxAbsoluteDepth
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2981 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2982 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2983 canDisplayChildLabels = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2984 this.hideAlone = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2985 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2986 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2987
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2988 if ( this == selectedNode \|\| lastChild && lastChild.angleEnd.end < this.angleEnd.end - .01)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2989 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2990 this.hideAlone = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2991 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2992
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2993 if ( this.hideAlonePrev == undefined )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2994 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2995 this.hideAlonePrev = this.hideAlone;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2996 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2997
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2998 if ( this == selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	2999 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3000 var otherArc =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3001 this.children.length ?
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3002 angleFactor *
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3003 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3004 this.baseMagnitude + this.magnitude -
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3005 lastChild.baseMagnitude - lastChild.magnitude
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3006 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3007 : this.baseMagnitude + this.magnitude;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3008 this.canDisplayLabelOther =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3009 this.children.length ?
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3010 otherArc *
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3011 (this.children[0].radiusInner.end + 1) * gRadius >=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3012 minWidth()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3013 : true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3014
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3015 this.keyUnclassified = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3016
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3017 if ( this.canDisplayLabelOther )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3018 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3019 this.angleOther = Math.PI * 2 - otherArc / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3020 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3021 else if ( otherArc > 0.0000000001 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3022 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3023 this.keyUnclassified = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3024 keys++;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3025 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3026
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3027 this.angleStart.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3028 this.angleEnd.setTarget(Math.PI * 2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3029
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3030 if ( this.children.length )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3031 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3032 this.radiusInner.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3033 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3034 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3035 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3036 this.radiusInner.setTarget(compressedRadii[0]);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3037 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3038
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3039 this.hidePrev = this.hide;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3040 this.hide = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3041 this.hideAlonePrev = this.hideAlone;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3042 this.hideAlone = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3043 this.keyed = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3044 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3045
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3046 if ( hueMax - hueMin > 1 / 12 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3047 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3048 hueMax = hueMin + 1 / 12;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3049 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3050
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3051 // set lightness
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3052 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3053 if ( ! ( hide \|\| this.hideAlone ) )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3054 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3055 if ( useHue() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3056 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3057 lightness = (lightnessBase + lightnessMax) / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3058 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3059 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3060 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3061 lightness = lightnessBase + (depth - 1) * lightnessFactor;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3062
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3063 if ( lightness > lightnessMax )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3064 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3065 lightness = lightnessMax;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3066 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3067 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3068 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3069
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3070 if ( hide )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3071 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3072 this.hide = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3073 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3074
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3075 if ( this.hidePrev == undefined )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3076 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3077 this.hidePrev = this.hide;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3078 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3079
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3080 var hiddenStart = -1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3081 var hiddenHueNumer = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3082 var hiddenHueDenom = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3083 var i = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3084
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3085 if ( ! this.hide )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3086 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3087 this.hiddenEnd = null;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3088 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3089
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3090 while ( true )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3091 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3092 if ( ! this.hideAlone && ! hide && ( i == this.children.length \|\| ! this.children[i].hide ) )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3093 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3094 // reached a non-hidden child or the end; set targets for
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3095 // previous group of hidden children (if any) using their
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3096 // average hue
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3097
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3098 if ( hiddenStart != -1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3099 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3100 var hiddenHue = hiddenHueDenom ? hiddenHueNumer / hiddenHueDenom : hueMin;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3101
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3102 for ( var j = hiddenStart; j < i; j++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3103 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3104 this.children[j].setTargetsSelected
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3105 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3106 hiddenHue,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3107 null,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3108 lightness,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3109 false,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3110 j < i - 1
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3111 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3112
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3113 this.children[j].hiddenEnd = null;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3114 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3115
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3116 this.children[hiddenStart].hiddenEnd = i - 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3117 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3118 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3119
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3120 if ( i == this.children.length )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3121 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3122 break;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3123 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3124
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3125 var child = this.children[i];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3126 var childHueMin;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3127 var childHueMax;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3128
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3129 if ( this.magnitude > 0 && ! this.hide && ! this.hideAlone )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3130 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3131 if ( useHue() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3132 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3133 childHueMin = child.hues[currentDataset];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3134 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3135 else if ( this == selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3136 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3137 var min = 0.0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3138 var max = 1.0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3139
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3140 if ( this.children.length > 6 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3141 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3142 childHueMin = lerp((1 - Math.pow(1 - i / this.children.length, 1.4)) * .95, 0, 1, min, max);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3143 childHueMax = lerp((1 - Math.pow(1 - (i + .55) / this.children.length, 1.4)) * .95, 0, 1, min, max);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3144 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3145 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3146 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3147 childHueMin = lerp(i / this.children.length, 0, 1, min, max);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3148 childHueMax = lerp((i + .55) / this.children.length, 0, 1, min, max);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3149 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3150 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3151 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3152 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3153 childHueMin = lerp
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3154 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3155 child.baseMagnitude,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3156 this.baseMagnitude,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3157 this.baseMagnitude + this.magnitude,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3158 hueMin,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3159 hueMax
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3160 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3161 childHueMax = lerp
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3162 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3163 child.baseMagnitude + child.magnitude * .99,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3164 this.baseMagnitude,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3165 this.baseMagnitude + this.magnitude,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3166 hueMin,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3167 hueMax
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3168 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3169 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3170 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3171 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3172 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3173 childHueMin = hueMin;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3174 childHueMax = hueMax;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3175 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3176
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3177 if ( ! this.hideAlone && ! hide && ! this.hide && child.hide )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3178 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3179 if ( hiddenStart == -1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3180 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3181 hiddenStart = i;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3182 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3183
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3184 if ( useHue() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3185 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3186 hiddenHueNumer += childHueMin * child.magnitude;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3187 hiddenHueDenom += child.magnitude;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3188 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3189 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3190 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3191 hiddenHueNumer += childHueMin;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3192 hiddenHueDenom++;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3193 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3194 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3195 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3196 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3197 hiddenStart = -1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3198
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3199 this.children[i].setTargetsSelected
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3200 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3201 childHueMin,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3202 childHueMax,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3203 lightness,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3204 hide \|\| this.keyed \|\| this.hideAlone \|\| this.hide && ! collapse,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3205 false
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3206 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3207 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3208
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3209 i++;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3210 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3211
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3212 if ( this.hue && this.magnitude )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3213 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3214 this.hue.setTarget(this.hues[currentDataset]);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3215
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3216 if ( this.attributes[magnitudeIndex][lastDataset] == 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3217 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3218 this.hue.start = this.hue.end;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3219 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3220 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3221
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3222 this.radialPrev = this.radial;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3223
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3224 if ( this == selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3225 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3226 this.resetLabelWidth();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3227 this.labelWidth.setTarget(this.nameWidth * labelWidthFudge);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3228 this.alphaWedge.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3229 this.alphaLabel.setTarget(1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3230 this.alphaOther.setTarget(1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3231 this.alphaArc.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3232 this.alphaLine.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3233 this.alphaPattern.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3234 this.r.setTarget(255);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3235 this.g.setTarget(255);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3236 this.b.setTarget(255);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3237 this.radial = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3238 this.labelRadius.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3239 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3240 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3241 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3242 var rgb = hslToRgb
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3243 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3244 hueMin,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3245 saturation,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3246 lightness
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3247 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3248
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3249 this.r.setTarget(rgb.r);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3250 this.g.setTarget(rgb.g);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3251 this.b.setTarget(rgb.b);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3252 this.alphaOther.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3253
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3254 this.alphaWedge.setTarget(1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3255
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3256 if ( this.hide \|\| this.hideAlone )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3257 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3258 this.alphaPattern.setTarget(1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3259 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3260 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3261 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3262 this.alphaPattern.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3263 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3264
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3265 // set radial
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3266 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3267 if ( ! ( hide \|\| this.hide ) )//&& ! this.keyed )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3268 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3269 if ( this.hideAlone )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3270 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3271 this.radial = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3272 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3273 else if ( false && canDisplayChildLabels )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3274 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3275 this.radial = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3276 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3277 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3278 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3279 this.radial = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3280
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3281 if ( this.hasChildren() && depth < maxDisplayDepth )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3282 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3283 var lastChild = this.children[this.children.length - 1];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3284
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3285 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3286 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3287 lastChild.angleEnd.end == this.angleEnd.end \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3288 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3289 (this.angleStart.end + this.angleEnd.end) / 2 -
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3290 lastChild.angleEnd.end
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3291 ) * (this.radiusInner.end + 1) * gRadius * 2 <
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3292 minWidth()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3293 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3294 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3295 this.radial = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3296 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3297 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3298 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3299 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3300
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3301 // set alphaLabel
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3302 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3303 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3304 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3305 collapse \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3306 hide \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3307 this.hide \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3308 this.keyed \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3309 depth > maxDisplayDepth \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3310 ! this.canDisplayDepth()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3311 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3312 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3313 this.alphaLabel.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3314 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3315 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3316 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3317 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3318 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3319 (this.radial \|\| nLabelOffsets[depth - 2])
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3320 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3321 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3322 this.alphaLabel.setTarget(1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3323 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3324 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3325 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3326 this.alphaLabel.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3327
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3328 if ( this.radialPrev )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3329 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3330 this.alphaLabel.start = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3331 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3332 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3333 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3334
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3335 // set alphaArc
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3336 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3337 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3338 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3339 collapse \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3340 hide \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3341 depth > maxDisplayDepth \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3342 ! this.canDisplayDepth()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3343 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3344 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3345 this.alphaArc.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3346 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3347 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3348 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3349 this.alphaArc.setTarget(1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3350 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3351
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3352 // set alphaLine
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3353 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3354 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3355 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3356 hide \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3357 this.hide && nextSiblingHidden \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3358 depth > maxDisplayDepth \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3359 ! this.canDisplayDepth()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3360 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3361 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3362 this.alphaLine.setTarget(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3363 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3364 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3365 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3366 this.alphaLine.setTarget(1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3367 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3368
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3369 //if ( ! this.radial )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3370 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3371 this.resetLabelWidth();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3372 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3373
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3374 // set labelRadius target
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3375 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3376 if ( collapse )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3377 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3378 this.labelRadius.setTarget(this.radiusInner.end);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3379 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3380 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3381 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3382 if ( depth > maxDisplayDepth \|\| ! this.canDisplayDepth() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3383 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3384 this.labelRadius.setTarget(1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3385 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3386 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3387 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3388 this.setTargetLabelRadius();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3389 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3390 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3391 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3392 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3393
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3394 this.setTargetWedge = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3395 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3396 var depth = this.getDepth() - selectedNode.getDepth() + 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3397
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3398 // set angles
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3399 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3400 var baseMagnitudeRelative = this.baseMagnitude - selectedNode.baseMagnitude;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3401 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3402 this.angleStart.setTarget(baseMagnitudeRelative * angleFactor);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3403 this.angleEnd.setTarget((baseMagnitudeRelative + this.magnitude) * angleFactor);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3404
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3405 // set radiusInner
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3406 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3407 if ( depth > maxDisplayDepth \|\| ! this.canDisplayDepth() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3408 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3409 this.radiusInner.setTarget(1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3410 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3411 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3412 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3413 if ( compress )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3414 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3415 this.radiusInner.setTarget(compressedRadii[depth - 2]);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3416 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3417 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3418 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3419 this.radiusInner.setTarget(nodeRadius * (depth - 1));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3420 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3421 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3422
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3423 if ( this.hide != undefined )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3424 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3425 this.hidePrev = this.hide;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3426 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3427
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3428 if ( this.hideAlone != undefined )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3429 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3430 this.hideAlonePrev = this.hideAlone;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3431 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3432
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3433 // set hide
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3434 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3435 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3436 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3437 (this.angleEnd.end - this.angleStart.end) *
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3438 (this.radiusInner.end * gRadius + gRadius) <
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3439 minWidth()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3440 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3441 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3442 if ( depth == 2 && ! this.getCollapse() && this.depth <= maxAbsoluteDepth )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3443 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3444 this.keyed = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3445 keys++;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3446 this.hide = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3447
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3448 var percentage = this.getPercentage();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3449 this.keyLabel = this.name + ' ' + percentage + '%';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3450 var dim = context.measureText(this.keyLabel);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3451 this.keyNameWidth = dim.width;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3452 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3453 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3454 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3455 this.keyed = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3456 this.hide = depth > 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3457 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3458 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3459 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3460 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3461 this.keyed = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3462 this.hide = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3463 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3464 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3465
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3466 this.shortenLabel = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3467 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3468 var label = this.name;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3469
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3470 var labelWidth = this.nameWidth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3471 var maxWidth = this.labelWidth.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3472 var minEndLength = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3473
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3474 if ( labelWidth > maxWidth && label.length > minEndLength * 2 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3475 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3476 var endLength =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3477 Math.floor((label.length - 1) * maxWidth / labelWidth / 2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3478
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3479 if ( endLength < minEndLength )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3480 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3481 endLength = minEndLength;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3482 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3483
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3484 return (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3485 label.substring(0, endLength) +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3486 '...' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3487 label.substring(label.length - endLength));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3488 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3489 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3490 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3491 return label;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3492 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3493 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3494
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3495 /* this.shouldAddSearchResultsString = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3496 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3497 if ( this.isSearchResult )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3498 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3499 return this.searchResults > 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3500 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3501 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3502 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3503 return this.searchResults > 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3504 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3505 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3506 */
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3507 this.sort = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3508 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3509 this.children.sort(function(a, b){return b.getMagnitude() - a.getMagnitude()});
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3510
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3511 for (var i = 0; i < this.children.length; i++)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3512 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3513 this.children[i].sort();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3514 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3515 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3516 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3517
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3518 var options;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3519
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3520 function addOptionElement(position, innerHTML, title)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3521 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3522 var div = document.createElement("div");
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3523 // div.style.position = 'absolute';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3524 // div.style.top = position + 'px';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3525 div.innerHTML = innerHTML;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3526 // div.style.display = 'block';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3527 div.style.padding = '2px';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3528
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3529 if ( title )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3530 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3531 div.title = title;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3532 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3533
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3534 options.appendChild(div);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3535 var height = 0;//div.clientHeight;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3536 return position + height;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3537 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3538
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3539 function addOptionElements(hueName, hueDefault)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3540 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3541 options = document.createElement('div');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3542 options.style.position = 'absolute';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3543 options.style.top = '0px';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3544 options.addEventListener('mousedown', function(e) {mouseClick(e)}, false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3545 // options.onmouseup = function(e) {mouseUp(e)}
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3546 document.body.appendChild(options);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3547
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3548 document.body.style.font = '11px sans-serif';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3549 var position = 5;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3550
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3551 details = document.createElement('div');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3552 details.style.position = 'absolute';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3553 details.style.top = '1%';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3554 details.style.right = '2%';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3555 details.style.textAlign = 'right';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3556 document.body.insertBefore(details, canvas);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3557 // <div id="details" style="position:absolute;top:1%;right:2%;text-align:right;">
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3558
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3559 details.innerHTML = '\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3560 <span id="detailsName" style="font-weight:bold"></span> \
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3561 <input type="button" id="detailsExpand" onclick="expand(focusNode);"\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3562 value="↔" title="Expand this wedge to become the new focus of the chart"/><br/>\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3563 <div id="detailsInfo" style="float:right"></div>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3564
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3565 keyControl = document.createElement('input');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3566 keyControl.type = 'button';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3567 keyControl.value = showKeys ? 'x' : '…';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3568 keyControl.style.position = '';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3569 keyControl.style.position = 'fixed';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3570 keyControl.style.visibility = 'hidden';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3571
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3572 document.body.insertBefore(keyControl, canvas);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3573
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3574 var logoElement = document.getElementById('logo');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3575
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3576 if ( logoElement )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3577 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3578 logoImage = logoElement.src;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3579 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3580 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3581 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3582 logoImage = 'http://marbl.github.io/Krona/img/logo-med.png';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3583 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3584
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3585 // document.getElementById('options').style.fontSize = '9pt';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3586 position = addOptionElement
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3587 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3588 position,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3589 '<a style="margin:2px" target="_blank" href="https://github.com/marbl/Krona/wiki"><img style="vertical-align:middle;width:108px;height:30px;" src="' + logoImage + '" alt="Logo of Krona"/></a><input type="button" id="back" value="←" title="Go back (Shortcut: ←)"/>\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3590 <input type="button" id="forward" value="→" title="Go forward (Shortcut: →)"/> \
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3591  Search: <input type="text" id="search"/>\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3592 <input id="searchClear" type="button" value="x" onclick="clearSearch()"/> \
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3593 <span id="searchResults"></span>'
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3594 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3595
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3596 if ( datasets > 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3597 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3598 var size = datasets < datasetSelectSize ? datasets : datasetSelectSize;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3599
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3600 var select =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3601 '<table style="border-collapse:collapse;padding:0px"><tr><td style="padding:0px">' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3602 '<select id="datasets" style="min-width:100px" size="' + size + '" onchange="onDatasetChange()">';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3603
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3604 for ( var i = 0; i < datasetNames.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3605 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3606 select += '<option>' + datasetNames[i] + '</option>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3607 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3608
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3609 select +=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3610 '</select></td><td style="vertical-align:top;padding:1px;">' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3611 '<input style="display:block" title="Previous dataset (Shortcut: ↑)" id="prevDataset" type="button" value="↑" onclick="prevDataset()" disabled="true"/>' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3612 '<input title="Next dataset (Shortcut: ↓)" id="nextDataset" type="button" value="↓" onclick="nextDataset()"/><br/></td>' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3613 '<td style="padding-top:1px;vertical-align:top"><input title="Switch to the last dataset that was viewed (Shortcut: TAB)" id="lastDataset" type="button" style="font:11px Times new roman" value="last" onclick="selectLastDataset()"/></td></tr></table>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3614
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3615 position = addOptionElement(position + 5, select);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3616
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3617 datasetDropDown = document.getElementById('datasets');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3618 datasetButtonLast = document.getElementById('lastDataset');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3619 datasetButtonPrev = document.getElementById('prevDataset');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3620 datasetButtonNext = document.getElementById('nextDataset');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3621
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3622 position += datasetDropDown.clientHeight;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3623 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3624
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3625 position = addOptionElement
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3626 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3627 position + 5,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3628 '<input type="button" id="maxAbsoluteDepthDecrease" value="-"/>\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3629 <span id="maxAbsoluteDepth"></span>\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3630  <input type="button" id="maxAbsoluteDepthIncrease" value="+"/> Max depth',
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3631 'Maximum depth to display, counted from the top level \
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3632 and including collapsed wedges.'
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3633 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3634
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3635 position = addOptionElement
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3636 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3637 position,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3638 '<input type="button" id="fontSizeDecrease" value="-"/>\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3639 <span id="fontSize"></span>\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3640  <input type="button" id="fontSizeIncrease" value="+"/> Font size'
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3641 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3642
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3643 position = addOptionElement
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3644 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3645 position,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3646 '<input type="button" id="radiusDecrease" value="-"/>\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3647 <input type="button" id="radiusIncrease" value="+"/> Chart size'
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3648 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3649
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3650 if ( hueName )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3651 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3652 hueDisplayName = attributes[attributeIndex(hueName)].displayName;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3653
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3654 position = addOptionElement
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3655 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3656 position + 5,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3657 '<input type="checkbox" id="useHue" style="float:left" ' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3658 '/><div>Color by<br/>' + hueDisplayName +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3659 '</div>'
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3660 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3661
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3662 useHueCheckBox = document.getElementById('useHue');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3663 useHueCheckBox.checked = hueDefault;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3664 useHueCheckBox.onclick = handleResize;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3665 useHueCheckBox.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3666 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3667 /*
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3668 position = addOptionElement
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3669 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3670 position + 5,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3671 ' <input type="checkbox" id="shorten" checked="checked" />Shorten labels</div>',
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3672 'Prevent labels from overlapping by shortening them'
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3673 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3674
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3675 position = addOptionElement
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3676 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3677 position,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3678 ' <input type="checkbox" id="compress" checked="checked" />Compress',
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3679 'Compress wedges if needed to show the entire depth'
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3680 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3681 */
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3682 position = addOptionElement
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3683 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3684 position,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3685 '<input type="checkbox" id="collapse" checked="checked" />Collapse',
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3686 'Collapse wedges that are redundant (entirely composed of another wedge)'
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3687 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3688
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3689 position = addOptionElement
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3690 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3691 position + 5,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3692 '<input type="button" id="snapshot" value="Snapshot"/>',
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3693 'Render the current view as SVG (Scalable Vector Graphics), a publication-\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3694 quality format that can be printed and saved (see Help for browser compatibility)'
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3695 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3696
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3697 position = addOptionElement
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3698 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3699 position + 5,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3700 '<input type="button" id="linkButton" value="Link"/>\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3701 <input type="text" size="30" id="linkText"/>',
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3702 'Show a link to this view that can be copied for bookmarking or sharing'
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3703 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3704
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3705 position = addOptionElement
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3706 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3707 position + 5,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3708 '<input type="button" id="help" value="?"\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3709 onclick="window.open(\'https://github.com/marbl/Krona/wiki/Browsing%20Krona%20charts\', \'help\')"/>',
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3710 'Help'
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3711 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3712 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3713
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3714 function arrow(angleStart, angleEnd, radiusInner)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3715 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3716 if ( context.globalAlpha == 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3717 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3718 return;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3719 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3720
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3721 var angleCenter = (angleStart + angleEnd) / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3722 var radiusArrowInner = radiusInner - gRadius / 10;//nodeRadius * gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3723 var radiusArrowOuter = gRadius * 1.1;//(1 + nodeRadius);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3724 var radiusArrowCenter = (radiusArrowInner + radiusArrowOuter) / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3725 var pointLength = (radiusArrowOuter - radiusArrowInner) / 5;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3726
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3727 context.fillStyle = highlightFill;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3728 context.lineWidth = highlightLineWidth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3729
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3730 // First, mask out the first half of the arrow. This will prevent the tips
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3731 // from superimposing if the arrow goes most of the way around the circle.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3732 // Masking is done by setting the clipping region to the inverse of the
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3733 // half-arrow, which is defined by cutting the half-arrow out of a large
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3734 // rectangle
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3735 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3736 context.beginPath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3737 context.arc(0, 0, radiusInner, angleCenter, angleEnd, false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3738 context.lineTo
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3739 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3740 radiusArrowInner * Math.cos(angleEnd),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3741 radiusArrowInner * Math.sin(angleEnd)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3742 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3743 context.lineTo
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3744 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3745 radiusArrowCenter * Math.cos(angleEnd) - pointLength * Math.sin(angleEnd),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3746 radiusArrowCenter * Math.sin(angleEnd) + pointLength * Math.cos(angleEnd)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3747 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3748 context.lineTo
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3749 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3750 radiusArrowOuter * Math.cos(angleEnd),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3751 radiusArrowOuter * Math.sin(angleEnd)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3752 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3753 context.arc(0, 0, gRadius, angleEnd, angleCenter, true);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3754 context.closePath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3755 context.moveTo(-imageWidth, -imageHeight);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3756 context.lineTo(imageWidth, -imageHeight);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3757 context.lineTo(imageWidth, imageHeight);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3758 context.lineTo(-imageWidth, imageHeight);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3759 context.closePath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3760 context.save();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3761 context.clip();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3762
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3763 // Next, draw the other half-arrow with the first half masked out
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3764 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3765 context.beginPath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3766 context.arc(0, 0, radiusInner, angleCenter, angleStart, true);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3767 context.lineTo
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3768 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3769 radiusArrowInner * Math.cos(angleStart),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3770 radiusArrowInner * Math.sin(angleStart)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3771 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3772 context.lineTo
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3773 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3774 radiusArrowCenter * Math.cos(angleStart) + pointLength * Math.sin(angleStart),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3775 radiusArrowCenter * Math.sin(angleStart) - pointLength * Math.cos(angleStart)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3776 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3777 context.lineTo
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3778 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3779 radiusArrowOuter * Math.cos(angleStart),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3780 radiusArrowOuter * Math.sin(angleStart)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3781 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3782 context.arc(0, 0, gRadius, angleStart, angleCenter, false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3783 context.fill();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3784 context.stroke();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3785
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3786 // Finally, remove the clipping region and draw the first half-arrow. This
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3787 // half is extended slightly to fill the seam.
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3788 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3789 context.restore();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3790 context.beginPath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3791 context.arc(0, 0, radiusInner, angleCenter - 2 / (2 * Math.PI * radiusInner), angleEnd, false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3792 context.lineTo
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3793 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3794 radiusArrowInner * Math.cos(angleEnd),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3795 radiusArrowInner * Math.sin(angleEnd)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3796 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3797 context.lineTo
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3798 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3799 radiusArrowCenter * Math.cos(angleEnd) - pointLength * Math.sin(angleEnd),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3800 radiusArrowCenter * Math.sin(angleEnd) + pointLength * Math.cos(angleEnd)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3801 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3802 context.lineTo
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3803 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3804 radiusArrowOuter * Math.cos(angleEnd),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3805 radiusArrowOuter * Math.sin(angleEnd)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3806 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3807 context.arc(0, 0, gRadius, angleEnd, angleCenter - 2 / (2 * Math.PI * gRadius), true);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3808 context.fill();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3809 context.stroke();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3810 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3811
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3812 function attributeIndex(aname)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3813 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3814 for ( var i = 0 ; i < attributes.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3815 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3816 if ( aname == attributes[i].name )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3817 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3818 return i;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3819 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3820 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3821
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3822 return null;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3823 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3824
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3825 function checkHighlight()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3826 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3827 var lastHighlightedNode = highlightedNode;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3828 var lastHighlightingHidden = highlightingHidden;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3829
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3830 highlightedNode = selectedNode;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3831 resetKeyOffset();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3832
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3833 if ( progress == 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3834 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3835 selectedNode.checkHighlight();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3836 if ( selectedNode.getParent() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3837 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3838 selectedNode.getParent().checkHighlightCenter();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3839 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3840
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3841 focusNode.checkHighlightMap();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3842 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3843
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3844 if ( highlightedNode != selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3845 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3846 if ( highlightedNode == focusNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3847 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3848 // canvas.style.display='none';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3849 // window.resizeBy(1,0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3850 // canvas.style.cursor='ew-resize';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3851 // window.resizeBy(-1,0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3852 // canvas.style.display='inline';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3853 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3854 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3855 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3856 // canvas.style.cursor='pointer';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3857 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3858 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3859 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3860 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3861 // canvas.style.cursor='auto';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3862 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3863
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3864 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3865 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3866 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3867 true \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3868 highlightedNode != lastHighlightedNode \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3869 highlightingHidden != highlightingHiddenLast
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3870 ) &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3871 progress == 1
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3872 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3873 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3874 draw(); // TODO: handle in update()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3875 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3876 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3877
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3878 function checkSelectedCollapse()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3879 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3880 var newNode = selectedNode;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3881
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3882 while ( newNode.getCollapse() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3883 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3884 newNode = newNode.children[0];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3885 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3886
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3887 if ( newNode.children.length == 0 && newNode.getParent() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3888 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3889 newNode = newNode.getParent();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3890 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3891
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3892 if ( newNode != selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3893 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3894 selectNode(newNode);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3895 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3896 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3897
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3898 function clearSearch()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3899 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3900 if ( search.value != '' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3901 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3902 search.value = '';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3903 onSearchChange();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3904 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3905 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3906
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3907 function createSVG()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3908 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3909 svgNS = "http://www.w3.org/2000/svg";
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3910 var SVG = {};
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3911 SVG.xlinkns = "http://www.w3.org/1999/xlink";
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3912
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3913 var newSVG = document.createElementNS(svgNS, "svg:svg");
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3914
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3915 newSVG.setAttribute("id", "canvas");
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3916 // How big is the canvas in pixels
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3917 newSVG.setAttribute("width", '100%');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3918 newSVG.setAttribute("height", '100%');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3919 // Set the coordinates used by drawings in the canvas
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3920 // newSVG.setAttribute("viewBox", "0 0 " + imageWidth + " " + imageHeight);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3921 // Define the XLink namespace that SVG uses
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3922 newSVG.setAttributeNS
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3923 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3924 "http://www.w3.org/2000/xmlns/",
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3925 "xmlns:xlink",
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3926 SVG.xlinkns
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3927 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3928
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3929 return newSVG;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3930 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3931
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3932 function degrees(radians)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3933 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3934 return radians * 180 / Math.PI;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3935 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3936
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3937 function draw()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3938 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3939 tweenFrames++;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3940 //resize();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3941 // context.fillRect(0, 0, imageWidth, imageHeight);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3942 context.clearRect(0, 0, imageWidth, imageHeight);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3943
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3944 context.font = fontNormal;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3945 context.textBaseline = 'middle';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3946
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3947 //context.strokeStyle = 'rgba(0, 0, 0, 0.3)';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3948 context.translate(centerX, centerY);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3949
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3950 resetKeyOffset();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3951
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3952 head.draw(false, false); // draw pie slices
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3953 head.draw(true, false); // draw labels
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3954
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3955 var pathRoot = selectedNode;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3956
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3957 if ( focusNode != 0 && focusNode != selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3958 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3959 context.globalAlpha = 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3960 focusNode.drawHighlight(true);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3961 pathRoot = focusNode;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3962 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3963
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3964 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3965 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3966 highlightedNode &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3967 highlightedNode.getDepth() >= selectedNode.getDepth() &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3968 highlightedNode != focusNode
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3969 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3970 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3971 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3972 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3973 progress == 1 &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3974 highlightedNode != selectedNode &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3975 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3976 highlightedNode != focusNode \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3977 focusNode.children.length > 0
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3978 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3979 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3980 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3981 context.globalAlpha = 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3982 highlightedNode.drawHighlight(true);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3983 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3984
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3985 //pathRoot = highlightedNode;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3986 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3987 else if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3988 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3989 progress == 1 &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3990 highlightedNode.getDepth() < selectedNode.getDepth()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3991 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3992 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3993 context.globalAlpha = 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3994 highlightedNode.drawHighlightCenter();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3995 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3996
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3997 if ( quickLook && false) // TEMP
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3998 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	3999 context.globalAlpha = 1 - progress / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4000 selectedNode.drawHighlight(true);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4001 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4002 else if ( progress < 1 )//&& zoomOut() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4003 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4004 if ( !zoomOut)//() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4005 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4006 context.globalAlpha = selectedNode.alphaLine.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4007 selectedNode.drawHighlight(true);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4008 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4009 else if ( selectedNodeLast )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4010 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4011 context.globalAlpha = 1 - 4 * Math.pow(progress - .5, 2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4012 selectedNodeLast.drawHighlight(false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4013 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4014 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4015
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4016 drawDatasetName();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4017
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4018 //drawHistory();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4019
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4020 context.translate(-centerX, -centerY);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4021 context.globalAlpha = 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4022
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4023 mapRadius =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4024 (imageHeight / 2 - details.clientHeight - details.offsetTop) /
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4025 (pathRoot.getDepth() - 1) * 3 / 4 / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4026
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4027 if ( mapRadius > maxMapRadius )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4028 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4029 mapRadius = maxMapRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4030 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4031
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4032 mapBuffer = mapRadius / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4033
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4034 //context.font = fontNormal;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4035 pathRoot.drawMap(pathRoot);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4036
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4037 if ( hueDisplayName && useHue() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4038 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4039 drawLegend();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4040 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4041 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4042
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4043 function drawBubble(angle, radius, width, radial, flip)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4044 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4045 var height = fontSize * 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4046 var x;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4047 var y;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4048
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4049 width = width + fontSize;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4050
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4051 if ( radial )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4052 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4053 y = -fontSize;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4054
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4055 if ( flip )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4056 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4057 x = radius - width + fontSize / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4058 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4059 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4060 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4061 x = radius - fontSize / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4062 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4063 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4064 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4065 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4066 x = -width / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4067 y = -radius - fontSize;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4068 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4069
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4070 if ( snapshotMode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4071 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4072 drawBubbleSVG(x + centerX, y + centerY, width, height, fontSize, angle);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4073 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4074 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4075 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4076 drawBubbleCanvas(x, y, width, height, fontSize, angle);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4077 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4078 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4079
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4080 function drawBubbleCanvas(x, y, width, height, radius, rotation)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4081 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4082 context.strokeStyle = 'black';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4083 context.lineWidth = highlightLineWidth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4084 context.fillStyle = 'rgba(255, 255, 255, .75)';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4085 context.rotate(rotation);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4086 roundedRectangle(x, y, width, fontSize * 2, fontSize);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4087 context.fill();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4088 context.stroke();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4089 context.rotate(-rotation);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4090 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4091
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4092 function drawBubbleSVG(x, y, width, height, radius, rotation)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4093 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4094 svg +=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4095 '<rect x="' + x + '" y="' + y +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4096 '" width="' + width +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4097 '" height="' + height +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4098 '" rx="' + radius +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4099 '" ry="' + radius +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4100 '" fill="rgba(255, 255, 255, .75)' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4101 '" class="highlight" ' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4102 'transform="rotate(' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4103 degrees(rotation) + ',' + centerX + ',' + centerY +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4104 ')"/>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4105 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4106
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4107 function drawDatasetName()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4108 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4109 var alpha = datasetAlpha.current();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4110
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4111 if ( alpha > 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4112 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4113 var radius = gRadius * compressedRadii[0] / -2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4114
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4115 if ( alpha > 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4116 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4117 alpha = 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4118 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4119
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4120 context.globalAlpha = alpha;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4121
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4122 drawBubble(0, -radius, datasetWidths[currentDataset], false, false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4123 drawText(datasetNames[currentDataset], 0, radius, 0, 'center', true);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4124 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4125 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4126
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4127 function drawHistory()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4128 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4129 var alpha = 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4130 context.textAlign = 'center';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4131
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4132 for ( var i = 0; i < nodeHistoryPosition && alpha > 0; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4133 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4134
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4135 context.globalAlpha = alpha - historyAlphaDelta * tweenFactor;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4136 context.fillText
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4137 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4138 nodeHistory[nodeHistoryPosition - i - 1].name,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4139 0,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4140 (i + tweenFactor) * historySpacingFactor * fontSize - 1
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4141 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4142
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4143 if ( alpha > 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4144 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4145 alpha -= historyAlphaDelta;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4146 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4147 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4148
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4149 context.globalAlpha = 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4150 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4151
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4152 function drawLegend()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4153 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4154 var left = imageWidth * .01;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4155 var width = imageHeight * .0265;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4156 var height = imageHeight * .15;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4157 var top = imageHeight - fontSize * 3.5 - height;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4158 var textLeft = left + width + fontSize / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4159
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4160 context.fillStyle = 'black';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4161 context.textAlign = 'start';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4162 context.font = fontNormal;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4163 // context.fillText(valueStartText, textLeft, top + height);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4164 // context.fillText(valueEndText, textLeft, top);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4165 context.fillText(hueDisplayName, left, imageHeight - fontSize * 1.5);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4166
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4167 var gradient = context.createLinearGradient(0, top + height, 0, top);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4168
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4169 for ( var i = 0; i < hueStopPositions.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4170 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4171 gradient.addColorStop(hueStopPositions[i], hueStopHsl[i]);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4172
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4173 var textY = top + (1 - hueStopPositions[i]) * height;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4174
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4175 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4176 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4177 i == 0 \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4178 i == hueStopPositions.length - 1 \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4179 textY > top + fontSize && textY < top + height - fontSize
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4180 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4181 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4182 context.fillText(hueStopText[i], textLeft, textY);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4183 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4184 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4185
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4186 context.fillStyle = gradient;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4187 context.fillRect(left, top, width, height);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4188 context.lineWidth = thinLineWidth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4189 context.strokeRect(left, top, width, height);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4190 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4191
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4192 function drawLegendSVG()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4193 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4194 var left = imageWidth * .01;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4195 var width = imageHeight * .0265;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4196 var height = imageHeight * .15;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4197 var top = imageHeight - fontSize * 3.5 - height;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4198 var textLeft = left + width + fontSize / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4199
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4200 var text = '';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4201
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4202 text += svgText(hueDisplayName, left, imageHeight - fontSize * 1.5);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4203
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4204 var svgtest = '<linearGradient id="gradient" x1="0%" y1="100%" x2="0%" y2="0%">';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4205
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4206 for ( var i = 0; i < hueStopPositions.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4207 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4208 svgtest +=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4209 '<stop offset="' + round(hueStopPositions[i] * 100) +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4210 '%" style="stop-color:' + hueStopHsl[i] + '"/>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4211
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4212 var textY = top + (1 - hueStopPositions[i]) * height;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4213
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4214 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4215 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4216 i == 0 \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4217 i == hueStopPositions.length - 1 \|\|
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4218 textY > top + fontSize && textY < top + height - fontSize
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4219 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4220 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4221 text += svgText(hueStopText[i], textLeft, textY);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4222 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4223 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4224
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4225 svgtest += '</linearGradient>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4226 //alert(svgtest);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4227 svg += svgtest;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4228 svg +=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4229 '<rect style="fill:url(#gradient)" x="' + left + '" y="' + top +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4230 '" width="' + width + '" height="' + height + '"/>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4231
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4232 svg += text;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4233 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4234
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4235 function drawSearchHighlights(label, bubbleX, bubbleY, rotation, center)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4236 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4237 var index = -1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4238 var labelLength = label.length;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4239
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4240 bubbleX -= fontSize / 4;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4241
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4242 do
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4243 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4244 index = label.toLowerCase().indexOf(search.value.toLowerCase(), index + 1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4245
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4246 if ( index != -1 && index < labelLength )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4247 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4248 var dim = context.measureText(label.substr(0, index));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4249 var x = bubbleX + dim.width;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4250
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4251 dim = context.measureText(label.substr(index, search.value.length));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4252
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4253 var y = bubbleY - fontSize * 3 / 4;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4254 var width = dim.width + fontSize / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4255 var height = fontSize * 3 / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4256 var radius = fontSize / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4257
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4258 if ( snapshotMode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4259 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4260 if ( center )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4261 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4262 x += centerX;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4263 y += centerY;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4264 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4265
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4266 svg +=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4267 '<rect x="' + x + '" y="' + y +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4268 '" width="' + width +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4269 '" height="' + height +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4270 '" rx="' + radius +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4271 '" ry="' + radius +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4272 '" class="searchHighlight' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4273 '" transform="rotate(' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4274 degrees(rotation) + ',' + centerX + ',' + centerY +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4275 ')"/>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4276 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4277 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4278 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4279 context.fillStyle = 'rgb(255, 255, 100)';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4280 context.rotate(rotation);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4281 roundedRectangle(x, y, width, height, radius);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4282 context.fill();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4283 context.rotate(-rotation);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4284 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4285 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4286 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4287 while ( index != -1 && index < labelLength );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4288 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4289
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4290 function drawText(text, x, y, angle, anchor, bold, color)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4291 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4292 if ( color == undefined )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4293 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4294 color = 'black';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4295 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4296
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4297 if ( snapshotMode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4298 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4299 svg +=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4300 '<text x="' + (centerX + x) + '" y="' + (centerY + y) +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4301 '" text-anchor="' + anchor + '" style="font-color:' + color + ';font-weight:' + (bold ? 'bold' : 'normal') +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4302 '" transform="rotate(' + degrees(angle) + ',' + centerX + ',' + centerY + ')">' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4303 text + '</text>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4304 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4305 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4306 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4307 context.fillStyle = color;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4308 context.textAlign = anchor;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4309 context.font = bold ? fontBold : fontNormal;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4310 context.rotate(angle);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4311 context.fillText(text, x, y);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4312 context.rotate(-angle);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4313 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4314 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4315
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4316 function drawTextPolar
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4317 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4318 text,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4319 innerText,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4320 angle,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4321 radius,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4322 radial,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4323 bubble,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4324 bold,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4325 searchResult,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4326 searchResults
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4327 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4328 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4329 var anchor;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4330 var textX;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4331 var textY;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4332 var spacer;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4333 var totalText = text;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4334 var flip;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4335
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4336 if ( snapshotMode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4337 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4338 spacer = '   ';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4339 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4340 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4341 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4342 spacer = ' ';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4343 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4344
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4345 if ( radial )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4346 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4347 flip = angle < 3 * Math.PI / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4348
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4349 if ( flip )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4350 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4351 angle -= Math.PI;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4352 radius = -radius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4353 anchor = 'end';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4354
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4355 if ( innerText )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4356 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4357 totalText = text + spacer + innerText;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4358 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4359 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4360 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4361 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4362 anchor = 'start';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4363
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4364 if ( innerText )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4365 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4366 totalText = innerText + spacer + text;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4367 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4368 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4369
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4370 textX = radius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4371 textY = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4372 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4373 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4374 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4375 flip = angle < Math.PI \|\| angle > 2 * Math.PI;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4376 var label;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4377
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4378 anchor = snapshotMode ? 'middle' : 'center';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4379
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4380 if ( flip )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4381 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4382 angle -= Math.PI;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4383 radius = -radius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4384 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4385
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4386 angle += Math.PI / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4387 textX = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4388 textY = -radius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4389 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4390
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4391 if ( bubble )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4392 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4393 var textActual = totalText;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4394
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4395 if ( innerText && snapshotMode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4396 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4397 if ( flip )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4398 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4399 textActual = text + ' ' + innerText;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4400 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4401 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4402 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4403 textActual = innerText + ' ' + text;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4404 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4405 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4406
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4407 if ( searchResults )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4408 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4409 textActual = textActual + searchResultString(searchResults);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4410 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4411
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4412 var textWidth = measureText(textActual, bold);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4413
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4414 var x = textX;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4415
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4416 if ( anchor == 'end' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4417 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4418 x -= textWidth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4419 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4420 else if ( anchor != 'start' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4421 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4422 // centered
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4423 x -= textWidth / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4424 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4425
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4426 drawBubble(angle, radius, textWidth, radial, flip);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4427
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4428 if ( searchResult )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4429 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4430 drawSearchHighlights
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4431 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4432 textActual,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4433 x,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4434 textY,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4435 angle,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4436 true
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4437 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4438 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4439 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4440
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4441 if ( searchResults )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4442 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4443 totalText = totalText + searchResultString(searchResults);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4444 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4445
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4446 drawText(totalText, textX, textY, angle, anchor, bold);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4447
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4448 return flip;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4449 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4450
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4451 function drawTick(start, length, angle)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4452 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4453 if ( snapshotMode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4454 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4455 svg +=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4456 '<line x1="' + (centerX + start) +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4457 '" y1="' + centerY +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4458 '" x2="' + (centerX + start + length) +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4459 '" y2="' + centerY +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4460 '" class="tick" transform="rotate(' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4461 degrees(angle) + ',' + centerX + ',' + centerY +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4462 ')"/>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4463 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4464 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4465 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4466 context.rotate(angle);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4467 context.beginPath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4468 context.moveTo(start, 0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4469 context.lineTo(start + length, 0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4470 context.lineWidth = thinLineWidth * 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4471 context.stroke();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4472 context.rotate(-angle);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4473 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4474 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4475
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4476 function drawWedge
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4477 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4478 angleStart,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4479 angleEnd,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4480 radiusInner,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4481 radiusOuter,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4482 color,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4483 patternAlpha,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4484 highlight
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4485 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4486 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4487 if ( context.globalAlpha == 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4488 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4489 return;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4490 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4491
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4492 if ( snapshotMode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4493 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4494 if ( angleEnd == angleStart + Math.PI * 2 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4495 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4496 // fudge to prevent overlap, which causes arc ambiguity
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4497 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4498 angleEnd -= .1 / gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4499 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4500
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4501 var longArc = angleEnd - angleStart > Math.PI ? 1 : 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4502
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4503 var x1 = centerX + radiusInner * Math.cos(angleStart);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4504 var y1 = centerY + radiusInner * Math.sin(angleStart);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4505
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4506 var x2 = centerX + gRadius * Math.cos(angleStart);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4507 var y2 = centerY + gRadius * Math.sin(angleStart);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4508
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4509 var x3 = centerX + gRadius * Math.cos(angleEnd);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4510 var y3 = centerY + gRadius * Math.sin(angleEnd);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4511
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4512 var x4 = centerX + radiusInner * Math.cos(angleEnd);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4513 var y4 = centerY + radiusInner * Math.sin(angleEnd);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4514
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4515 var dArray =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4516 [
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4517 " M ", x1, ",", y1,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4518 " L ", x2, ",", y2,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4519 " A ", gRadius, ",", gRadius, " 0 ", longArc, ",1 ", x3, ",", y3,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4520 " L ", x4, ",", y4,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4521 " A ", radiusInner, ",", radiusInner, " 0 ", longArc, " 0 ", x1, ",", y1,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4522 " Z "
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4523 ];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4524
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4525 svg +=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4526 '<path class="'+ (highlight ? 'highlight' : 'wedge') + '" fill="' + color +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4527 '" d="' + dArray.join('') + '"/>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4528
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4529 if ( patternAlpha > 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4530 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4531 svg +=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4532 '<path class="wedge" fill="url(#hiddenPattern)" d="' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4533 dArray.join('') + '"/>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4534 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4535 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4536 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4537 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4538 // fudge to prevent seams during animation
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4539 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4540 angleEnd += 1 / gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4541
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4542 context.fillStyle = color;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4543 context.beginPath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4544 context.arc(0, 0, radiusInner, angleStart, angleEnd, false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4545 context.arc(0, 0, radiusOuter, angleEnd, angleStart, true);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4546 context.closePath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4547 context.fill();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4548
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4549 if ( patternAlpha > 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4550 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4551 context.save();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4552 context.clip();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4553 context.globalAlpha = patternAlpha;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4554 context.fillStyle = hiddenPattern;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4555 context.fill();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4556 context.restore();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4557 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4558
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4559 if ( highlight )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4560 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4561 context.lineWidth = highlight ? highlightLineWidth : thinLineWidth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4562 context.strokeStyle = 'black';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4563 context.stroke();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4564 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4565 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4566 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4567
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4568 function expand(node)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4569 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4570 selectNode(node);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4571 updateView();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4572 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4573
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4574 function focusLost()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4575 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4576 mouseX = -1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4577 mouseY = -1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4578 checkHighlight();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4579 document.body.style.cursor = 'auto';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4580 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4581
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4582 function fontSizeDecrease()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4583 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4584 if ( fontSize > 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4585 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4586 fontSize--;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4587 updateViewNeeded = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4588 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4589 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4590
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4591 function fontSizeIncrease()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4592 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4593 fontSize++;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4594 updateViewNeeded = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4595 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4596
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4597 function getGetString(name, value, bool)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4598 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4599 return name + '=' + (bool ? value ? 'true' : 'false' : value);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4600 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4601
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4602 function hideLink()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4603 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4604 hide(linkText);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4605 show(linkButton);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4606 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4607
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4608 function show(object)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4609 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4610 object.style.display = 'inline';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4611 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4612
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4613 function hide(object)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4614 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4615 object.style.display = 'none';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4616 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4617
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4618 function showLink()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4619 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4620 var urlHalves = String(document.location).split('?');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4621 var newGetVariables = new Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4622
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4623 newGetVariables.push
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4624 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4625 getGetString('dataset', currentDataset, false),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4626 getGetString('node', selectedNode.id, false),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4627 getGetString('collapse', collapse, true),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4628 getGetString('color', useHue(), true),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4629 getGetString('depth', maxAbsoluteDepth - 1, false),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4630 getGetString('font', fontSize, false),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4631 getGetString('key', showKeys, true)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4632 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4633
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4634 hide(linkButton);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4635 show(linkText);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4636 linkText.value = urlHalves[0] + '?' + getVariables.concat(newGetVariables).join('&');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4637 //linkText.disabled = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4638 linkText.focus();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4639 linkText.select();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4640 //linkText.disabled = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4641 // document.location = urlHalves[0] + '?' + getVariables.join('&');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4642 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4643
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4644 function getFirstChild(element)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4645 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4646 element = element.firstChild;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4647
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4648 if ( element && element.nodeType != 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4649 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4650 element = getNextSibling(element);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4651 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4652
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4653 return element;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4654 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4655
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4656 function getNextSibling(element)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4657 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4658 do
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4659 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4660 element = element.nextSibling;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4661 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4662 while ( element && element.nodeType != 1 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4663
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4664 return element;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4665 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4666
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4667 function getPercentage(fraction)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4668 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4669 return round(fraction * 100);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4670 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4671
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4672 function hslText(hue)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4673 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4674 if ( 1 \|\| snapshotMode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4675 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4676 // Safari doesn't seem to allow hsl() in SVG
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4677
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4678 var rgb = hslToRgb(hue, saturation, (lightnessBase + lightnessMax) / 2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4679
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4680 return rgbText(rgb.r, rgb.g, rgb.b);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4681 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4682 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4683 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4684 var hslArray =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4685 [
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4686 'hsl(',
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4687 Math.floor(hue * 360),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4688 ',',
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4689 Math.floor(saturation * 100),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4690 '%,',
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4691 Math.floor((lightnessBase + lightnessMax) * 50),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4692 '%)'
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4693 ];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4694
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4695 return hslArray.join('');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4696 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4697 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4698
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4699 function hslToRgb(h, s, l)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4700 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4701 var m1, m2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4702 var r, g, b;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4703
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4704 if (s == 0)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4705 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4706 r = g = b = Math.floor((l * 255));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4707 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4708 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4709 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4710 if (l <= 0.5)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4711 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4712 m2 = l * (s + 1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4713 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4714 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4715 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4716 m2 = l + s - l * s;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4717 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4718
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4719 m1 = l * 2 - m2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4720
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4721 r = Math.floor(hueToRgb(m1, m2, h + 1 / 3));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4722 g = Math.floor(hueToRgb(m1, m2, h));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4723 b = Math.floor(hueToRgb(m1, m2, h - 1/3));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4724 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4725
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4726 return {r: r, g: g, b: b};
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4727 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4728
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4729 function hueToRgb(m1, m2, hue)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4730 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4731 var v;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4732
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4733 while (hue < 0)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4734 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4735 hue += 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4736 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4737
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4738 while (hue > 1)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4739 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4740 hue -= 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4741 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4742
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4743 if (6 * hue < 1)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4744 v = m1 + (m2 - m1) * hue * 6;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4745 else if (2 * hue < 1)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4746 v = m2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4747 else if (3 * hue < 2)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4748 v = m1 + (m2 - m1) * (2/3 - hue) * 6;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4749 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4750 v = m1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4751
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4752 return 255 * v;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4753 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4754
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4755 function interpolateHue(hueStart, hueEnd, valueStart, valueEnd)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4756 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4757 // since the gradient will be RGB based, we need to add stops to hit all the
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4758 // colors in the hue spectrum
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4759
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4760 hueStopPositions = new Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4761 hueStopHsl = new Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4762 hueStopText = new Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4763
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4764 hueStopPositions.push(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4765 hueStopHsl.push(hslText(hueStart));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4766 hueStopText.push(round(valueStart));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4767
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4768 for
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4769 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4770 var i = (hueStart > hueEnd ? 5 / 6 : 1 / 6);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4771 (hueStart > hueEnd ? i > 0 : i < 1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4772 i += (hueStart > hueEnd ? -1 : 1) / 6
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4773 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4774 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4775 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4776 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4777 hueStart > hueEnd ?
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4778 i > hueEnd && i < hueStart :
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4779 i > hueStart && i < hueEnd
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4780 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4781 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4782 hueStopPositions.push(lerp(i, hueStart, hueEnd, 0, 1));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4783 hueStopHsl.push(hslText(i));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4784 hueStopText.push(round(lerp
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4785 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4786 i,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4787 hueStart,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4788 hueEnd,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4789 valueStart,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4790 valueEnd
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4791 )));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4792 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4793 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4794
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4795 hueStopPositions.push(1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4796 hueStopHsl.push(hslText(hueEnd));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4797 hueStopText.push(round(valueEnd));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4798 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4799
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4800 function keyLineAngle(angle, keyAngle, bendRadius, keyX, keyY, pointsX, pointsY)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4801 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4802 if ( angle < Math.PI / 2 && keyY < bendRadius * Math.sin(angle)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4803 \|\| angle > Math.PI / 2 && keyY < bendRadius)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4804 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4805 return Math.asin(keyY / bendRadius);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4806 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4807 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4808 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4809 // find the angle of the normal to a tangent line that goes to
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4810 // the label
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4811
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4812 var textDist = Math.sqrt
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4813 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4814 Math.pow(keyX, 2) +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4815 Math.pow(keyY, 2)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4816 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4817
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4818 var tanAngle = Math.acos(bendRadius / textDist) + keyAngle;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4819
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4820 if ( angle < tanAngle \|\| angle < Math.PI / 2 )//\|\| labelLeft < centerX )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4821 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4822 // angle doesn't reach far enough for tangent; collapse and
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4823 // connect directly to label
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4824
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4825 if ( keyY / Math.tan(angle) > 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4826 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4827 pointsX.push(keyY / Math.tan(angle));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4828 pointsY.push(keyY);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4829 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4830 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4831 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4832 pointsX.push(bendRadius * Math.cos(angle));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4833 pointsY.push(bendRadius * Math.sin(angle));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4834 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4835
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4836 return angle;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4837 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4838 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4839 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4840 return tanAngle;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4841 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4842 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4843 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4844
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4845 function keyOffset()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4846 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4847 return imageHeight - (keys - currentKey + 1) * (keySize + keyBuffer) + keyBuffer - margin;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4848 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4849
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4850 function lerp(value, fromStart, fromEnd, toStart, toEnd)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4851 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4852 return (value - fromStart) *
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4853 (toEnd - toStart) /
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4854 (fromEnd - fromStart) +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4855 toStart;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4856 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4857
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4858 function createCanvas()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4859 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4860 canvas = document.createElement('canvas');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4861 document.body.appendChild(canvas);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4862 context = canvas.getContext('2d');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4863 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4864
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4865 function load()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4866 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4867 document.body.style.overflow = "hidden";
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4868 document.body.style.margin = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4869
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4870 createCanvas();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4871
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4872 if ( context == undefined )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4873 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4874 document.body.innerHTML = '\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4875 <br/>This browser does not support HTML5 (see \
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4876 <a href="https://github.com/marbl/Krona/wiki/Browser%20support">Browser support</a>).\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4877 ';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4878 return;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4879 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4880
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4881 if ( typeof context.fillText != 'function' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4882 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4883 document.body.innerHTML = '\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4884 <br/>This browser does not support HTML5 canvas text (see \
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4885 <a href="https://github.com/marbl/Krona/wiki/Browser%20support">Browser support</a>).\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4886 ';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4887 return;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4888 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4889
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4890 resize();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4891
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4892 var kronaElement = document.getElementsByTagName('krona')[0];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4893
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4894 var magnitudeName;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4895 var hueName;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4896 var hueDefault;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4897 var hueStart;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4898 var hueEnd;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4899 var valueStart;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4900 var valueEnd;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4901
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4902 if ( kronaElement.getAttribute('collapse') != undefined )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4903 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4904 collapse = kronaElement.getAttribute('collapse') == 'true';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4905 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4906
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4907 if ( kronaElement.getAttribute('key') != undefined )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4908 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4909 showKeys = kronaElement.getAttribute('key') == 'true';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4910 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4911
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4912 for
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4913 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4914 var element = getFirstChild(kronaElement);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4915 element;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4916 element = getNextSibling(element)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4917 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4918 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4919 switch ( element.tagName.toLowerCase() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4920 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4921 case 'attributes':
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4922 magnitudeName = element.getAttribute('magnitude');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4923 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4924 for
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4925 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4926 var attributeElement = getFirstChild(element);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4927 attributeElement;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4928 attributeElement = getNextSibling(attributeElement)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4929 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4930 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4931 var tag = attributeElement.tagName.toLowerCase();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4932
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4933 if ( tag == 'attribute' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4934 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4935 var attribute = new Attribute();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4936 attribute.name = attributeElement.firstChild.nodeValue.toLowerCase();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4937 attribute.displayName = attributeElement.getAttribute('display');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4938
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4939 if ( attributeElement.getAttribute('hrefBase') )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4940 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4941 attribute.hrefBase = attributeElement.getAttribute('hrefBase');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4942 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4943
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4944 if ( attributeElement.getAttribute('target') )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4945 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4946 attribute.target = attributeElement.getAttribute('target');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4947 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4948
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4949 if ( attribute.name == magnitudeName )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4950 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4951 magnitudeIndex = attributes.length;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4952 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4953
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4954 if ( attributeElement.getAttribute('listAll') )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4955 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4956 attribute.listAll = attributeElement.getAttribute('listAll').toLowerCase();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4957 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4958 else if ( attributeElement.getAttribute('listNode') )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4959 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4960 attribute.listNode = attributeElement.getAttribute('listNode').toLowerCase();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4961 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4962 else if ( attributeElement.getAttribute('dataAll') )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4963 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4964 attribute.dataAll = attributeElement.getAttribute('dataAll').toLowerCase();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4965 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4966 else if ( attributeElement.getAttribute('dataNode') )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4967 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4968 attribute.dataNode = attributeElement.getAttribute('dataNode').toLowerCase();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4969 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4970
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4971 if ( attributeElement.getAttribute('postUrl') )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4972 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4973 attribute.postUrl = attributeElement.getAttribute('postUrl');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4974 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4975
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4976 if ( attributeElement.getAttribute('postVar') )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4977 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4978 attribute.postVar = attributeElement.getAttribute('postVar');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4979 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4980
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4981 if ( attributeElement.getAttribute('mono') )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4982 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4983 attribute.mono = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4984 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4985
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4986 attributes.push(attribute);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4987 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4988 else if ( tag == 'list' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4989 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4990 var attribute = new Attribute();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4991
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4992 attribute.name = attributeElement.firstChild.nodeValue;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4993 attribute.list = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4994 attributes.push(attribute);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4995 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4996 else if ( tag == 'data' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4997 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4998 var attribute = new Attribute();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	4999
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5000 attribute.name = attributeElement.firstChild.nodeValue;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5001 attribute.data = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5002 attributes.push(attribute);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5003
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5004 var enableScript = document.createElement('script');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5005 var date = new Date();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5006 enableScript.src =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5007 attributeElement.getAttribute('enable') + '?' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5008 date.getTime();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5009 document.body.appendChild(enableScript);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5010 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5011 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5012 break;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5013
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5014 case 'color':
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5015 hueName = element.getAttribute('attribute');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5016 hueStart = Number(element.getAttribute('hueStart')) / 360;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5017 hueEnd = Number(element.getAttribute('hueEnd')) / 360;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5018 valueStart = Number(element.getAttribute('valueStart'));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5019 valueEnd = Number(element.getAttribute('valueEnd'));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5020 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5021 interpolateHue(hueStart, hueEnd, valueStart, valueEnd);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5022 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5023 if ( element.getAttribute('default') == 'true' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5024 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5025 hueDefault = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5026 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5027 break;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5028
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5029 case 'datasets':
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5030 datasetNames = new Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5031 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5032 for ( j = getFirstChild(element); j; j = getNextSibling(j) )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5033 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5034 datasetNames.push(j.firstChild.nodeValue);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5035 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5036 datasets = datasetNames.length;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5037 break;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5038
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5039 case 'node':
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5040 head = loadTreeDOM
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5041 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5042 element,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5043 magnitudeName,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5044 hueName,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5045 hueStart,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5046 hueEnd,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5047 valueStart,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5048 valueEnd
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5049 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5050 break;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5051 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5052 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5053
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5054 // get GET options
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5055 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5056 var urlHalves = String(document.location).split('?');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5057 var datasetDefault = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5058 var maxDepthDefault;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5059 var nodeDefault = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5060 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5061 if ( urlHalves[1] )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5062 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5063 var vars = urlHalves[1].split('&');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5064
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5065 for ( i = 0; i < vars.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5066 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5067 var pair = vars[i].split('=');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5068
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5069 switch ( pair[0] )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5070 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5071 case 'collapse':
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5072 collapse = pair[1] == 'true';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5073 break;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5074
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5075 case 'color':
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5076 hueDefault = pair[1] == 'true';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5077 break;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5078
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5079 case 'dataset':
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5080 datasetDefault = Number(pair[1]);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5081 break;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5082
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5083 case 'depth':
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5084 maxDepthDefault = Number(pair[1]) + 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5085 break;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5086
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5087 case 'key':
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5088 showKeys = pair[1] == 'true';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5089 break;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5090
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5091 case 'font':
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5092 fontSize = Number(pair[1]);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5093 break;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5094
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5095 case 'node':
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5096 nodeDefault = Number(pair[1]);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5097 break;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5098
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5099 default:
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5100 getVariables.push(pair[0] + '=' + pair[1]);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5101 break;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5102 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5103 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5104 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5105
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5106 addOptionElements(hueName, hueDefault);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5107 setCallBacks();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5108
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5109 head.sort();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5110 maxAbsoluteDepth = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5111 selectDataset(datasetDefault);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5112
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5113 if ( maxDepthDefault && maxDepthDefault < head.maxDepth )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5114 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5115 maxAbsoluteDepth = maxDepthDefault;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5116 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5117 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5118 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5119 maxAbsoluteDepth = head.maxDepth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5120 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5121
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5122 selectNode(nodes[nodeDefault]);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5123
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5124 setInterval(update, 20);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5125
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5126 window.onresize = handleResize;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5127 updateMaxAbsoluteDepth();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5128 updateViewNeeded = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5129 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5130
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5131 function loadTreeDOM
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5132 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5133 domNode,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5134 magnitudeName,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5135 hueName,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5136 hueStart,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5137 hueEnd,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5138 valueStart,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5139 valueEnd
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5140 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5141 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5142 var newNode = new Node();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5143
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5144 newNode.name = domNode.getAttribute('name');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5145
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5146 if ( domNode.getAttribute('href') )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5147 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5148 newNode.href = domNode.getAttribute('href');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5149 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5150
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5151 if ( hueName )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5152 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5153 newNode.hues = new Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5154 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5155
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5156 for ( var i = getFirstChild(domNode); i; i = getNextSibling(i) )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5157 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5158 switch ( i.tagName.toLowerCase() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5159 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5160 case 'node':
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5161 var newChild = loadTreeDOM
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5162 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5163 i,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5164 magnitudeName,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5165 hueName,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5166 hueStart,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5167 hueEnd,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5168 valueStart,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5169 valueEnd
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5170 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5171 newChild.parent = newNode;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5172 newNode.children.push(newChild);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5173 break;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5174
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5175 default:
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5176 var attributeName = i.tagName.toLowerCase();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5177 var index = attributeIndex(attributeName);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5178 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5179 newNode.attributes[index] = new Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5180 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5181 for ( var j = getFirstChild(i); j; j = getNextSibling(j) )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5182 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5183 if ( attributes[index] == undefined )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5184 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5185 var x = 5;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5186 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5187 if ( attributes[index].list )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5188 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5189 newNode.attributes[index].push(new Array());
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5190
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5191 for ( var k = getFirstChild(j); k; k = getNextSibling(k) )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5192 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5193 newNode.attributes[index][newNode.attributes[index].length - 1].push(k.firstChild.nodeValue);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5194 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5195 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5196 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5197 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5198 var value = j.firstChild ? j.firstChild.nodeValue : '';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5199
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5200 if ( j.getAttribute('href') )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5201 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5202 var target;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5203
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5204 if ( attributes[index].target )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5205 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5206 target = ' target="' + attributes[index].target + '"';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5207 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5208
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5209 value = '<a href="' + attributes[index].hrefBase + j.getAttribute('href') + '"' + target + '>' + value + '</a>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5210 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5211
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5212 newNode.attributes[index].push(value);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5213 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5214 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5215 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5216 if ( attributeName == magnitudeName \|\| attributeName == hueName )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5217 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5218 for ( j = 0; j < datasets; j++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5219 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5220 var value = newNode.attributes[index][j] == undefined ? 0 : Number(newNode.attributes[index][j]);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5221
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5222 newNode.attributes[index][j] = value;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5223
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5224 if ( attributeName == hueName )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5225 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5226 var hue = lerp
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5227 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5228 value,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5229 valueStart,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5230 valueEnd,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5231 hueStart,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5232 hueEnd
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5233 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5234
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5235 if ( hue < hueStart == hueStart < hueEnd )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5236 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5237 hue = hueStart;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5238 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5239 else if ( hue > hueEnd == hueStart < hueEnd )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5240 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5241 hue = hueEnd;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5242 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5243
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5244 newNode.hues[j] = hue;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5245 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5246 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5247
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5248 if ( attributeName == hueName )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5249 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5250 newNode.hue = new Tween(newNode.hues[0], newNode.hues[0]);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5251 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5252 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5253 break;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5254 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5255 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5256
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5257 return newNode;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5258 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5259
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5260 function maxAbsoluteDepthDecrease()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5261 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5262 if ( maxAbsoluteDepth > 2 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5263 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5264 maxAbsoluteDepth--;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5265 head.setMaxDepths();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5266 handleResize();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5267 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5268 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5269
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5270 function maxAbsoluteDepthIncrease()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5271 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5272 if ( maxAbsoluteDepth < head.maxDepth )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5273 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5274 maxAbsoluteDepth++;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5275 head.setMaxDepths();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5276 handleResize();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5277 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5278 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5279
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5280 function measureText(text, bold)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5281 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5282 context.font = bold ? fontBold : fontNormal;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5283 var dim = context.measureText(text);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5284 return dim.width;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5285 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5286
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5287 function min(a, b)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5288 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5289 return a < b ? a : b;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5290 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5291
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5292 function minWidth()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5293 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5294 // Min wedge width (at center) for displaying a node (or for displaying a
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5295 // label if it's at the highest level being viewed, multiplied by 2 to make
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5296 // further calculations simpler
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5297
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5298 return (fontSize * 2.3);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5299 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5300
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5301 function mouseMove(e)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5302 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5303 mouseX = e.pageX;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5304 mouseY = e.pageY - headerHeight;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5305 mouseXRel = (mouseX - centerX) * backingScale()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5306 mouseYRel = (mouseY - centerY) * backingScale()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5307
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5308 if ( head && ! quickLook )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5309 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5310 checkHighlight();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5311 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5312 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5313
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5314 function mouseClick(e)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5315 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5316 if ( highlightedNode == focusNode && focusNode != selectedNode \|\| selectedNode.hasParent(highlightedNode) )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5317 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5318 if ( highlightedNode.hasChildren() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5319 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5320 expand(highlightedNode);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5321 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5322 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5323 else if ( progress == 1 )//( highlightedNode != selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5324 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5325 setFocus(highlightedNode);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5326 // document.body.style.cursor='ew-resize';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5327 draw();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5328 checkHighlight();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5329 var date = new Date();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5330 mouseDownTime = date.getTime();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5331 mouseDown = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5332 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5333 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5334
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5335 function mouseUp(e)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5336 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5337 if ( quickLook )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5338 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5339 navigateBack();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5340 quickLook = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5341 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5342
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5343 mouseDown = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5344 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5345
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5346 function navigateBack()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5347 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5348 if ( nodeHistoryPosition > 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5349 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5350 nodeHistory[nodeHistoryPosition] = selectedNode;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5351 nodeHistoryPosition--;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5352
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5353 if ( nodeHistory[nodeHistoryPosition].collapse )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5354 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5355 collapseCheckBox.checked = collapse = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5356 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5357
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5358 setSelectedNode(nodeHistory[nodeHistoryPosition]);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5359 updateDatasetButtons();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5360 updateView();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5361 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5362 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5363
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5364 function navigateUp()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5365 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5366 if ( selectedNode.getParent() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5367 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5368 selectNode(selectedNode.getParent());
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5369 updateView();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5370 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5371 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5372
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5373 function navigateForward()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5374 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5375 if ( nodeHistoryPosition < nodeHistory.length - 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5376 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5377 nodeHistoryPosition++;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5378 var newNode = nodeHistory[nodeHistoryPosition];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5379
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5380 if ( newNode.collapse )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5381 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5382 collapseCheckBox.checked = collapse = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5383 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5384
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5385 if ( nodeHistoryPosition == nodeHistory.length - 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5386 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5387 // this will ensure the forward button is disabled
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5388
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5389 nodeHistory.length = nodeHistoryPosition;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5390 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5391
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5392 setSelectedNode(newNode);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5393 updateDatasetButtons();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5394 updateView();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5395 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5396 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5397
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5398 function nextDataset()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5399 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5400 var newDataset = currentDataset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5401
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5402 do
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5403 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5404 if ( newDataset == datasets - 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5405 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5406 newDataset = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5407 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5408 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5409 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5410 newDataset++;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5411 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5412 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5413 while ( datasetDropDown.options[newDataset].disabled )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5414
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5415 selectDataset(newDataset);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5416 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5417
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5418 function onDatasetChange()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5419 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5420 selectDataset(datasetDropDown.selectedIndex);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5421 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5422
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5423 function onKeyDown(event)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5424 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5425 if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5426 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5427 event.keyCode == 37 &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5428 document.activeElement.id != 'search' &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5429 document.activeElement.id != 'linkText'
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5430 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5431 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5432 navigateBack();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5433 event.preventDefault();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5434 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5435 else if
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5436 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5437 event.keyCode == 39 &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5438 document.activeElement.id != 'search' &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5439 document.activeElement.id != 'linkText'
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5440 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5441 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5442 navigateForward();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5443 event.preventDefault();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5444 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5445 else if ( event.keyCode == 38 && datasets > 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5446 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5447 prevDataset();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5448
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5449 //if ( document.activeElement.id == 'datasets' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5450 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5451 event.preventDefault();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5452 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5453 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5454 else if ( event.keyCode == 40 && datasets > 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5455 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5456 nextDataset();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5457
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5458 //if ( document.activeElement.id == 'datasets' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5459 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5460 event.preventDefault();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5461 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5462 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5463 else if ( event.keyCode == 9 && datasets > 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5464 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5465 selectLastDataset();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5466 event.preventDefault();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5467 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5468 else if ( event.keyCode == 83 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5469 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5470 progress += .2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5471 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5472 else if ( event.keyCode == 66 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5473 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5474 progress -= .2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5475 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5476 else if ( event.keyCode == 70 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5477 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5478 progress = 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5479 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5480 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5481
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5482 function onKeyPress(event)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5483 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5484 if ( event.keyCode == 38 && datasets > 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5485 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5486 // prevDataset();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5487
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5488 //if ( document.activeElement.id == 'datasets' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5489 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5490 event.preventDefault();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5491 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5492 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5493 else if ( event.keyCode == 40 && datasets > 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5494 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5495 // nextDataset();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5496
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5497 //if ( document.activeElement.id == 'datasets' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5498 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5499 event.preventDefault();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5500 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5501 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5502 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5503
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5504 function onKeyUp(event)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5505 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5506 if ( event.keyCode == 27 && document.activeElement.id == 'search' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5507 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5508 search.value = '';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5509 onSearchChange();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5510 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5511 else if ( event.keyCode == 38 && datasets > 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5512 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5513 // prevDataset();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5514
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5515 //if ( document.activeElement.id == 'datasets' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5516 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5517 event.preventDefault();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5518 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5519 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5520 else if ( event.keyCode == 40 && datasets > 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5521 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5522 // nextDataset();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5523
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5524 //if ( document.activeElement.id == 'datasets' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5525 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5526 event.preventDefault();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5527 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5528 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5529 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5530
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5531 function onSearchChange()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5532 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5533 nSearchResults = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5534 head.search();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5535
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5536 if ( search.value == '' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5537 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5538 searchResults.innerHTML = '';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5539 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5540 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5541 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5542 searchResults.innerHTML = nSearchResults + ' results';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5543 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5544
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5545 setFocus(selectedNode);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5546 draw();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5547 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5548
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5549 function post(url, variable, value, postWindow)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5550 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5551 var form = document.createElement('form');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5552 var input = document.createElement('input');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5553 var inputDataset = document.createElement('input');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5554
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5555 form.appendChild(input);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5556 form.appendChild(inputDataset);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5557
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5558 form.method = "POST";
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5559 form.action = url;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5560
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5561 if ( postWindow == undefined )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5562 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5563 form.target = '_blank';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5564 postWindow = window;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5565 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5566
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5567 input.type = 'hidden';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5568 input.name = variable;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5569 input.value = value;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5570
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5571 inputDataset.type = 'hidden';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5572 inputDataset.name = 'dataset';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5573 inputDataset.value = currentDataset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5574
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5575 postWindow.document.body.appendChild(form);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5576 form.submit();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5577 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5578
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5579 function prevDataset()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5580 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5581 var newDataset = currentDataset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5582
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5583 do
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5584 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5585 if ( newDataset == 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5586 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5587 newDataset = datasets - 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5588 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5589 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5590 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5591 newDataset--;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5592 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5593 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5594 while ( datasetDropDown.options[newDataset].disabled );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5595
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5596 selectDataset(newDataset);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5597 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5598
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5599 function radiusDecrease()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5600 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5601 if ( bufferFactor < .309 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5602 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5603 bufferFactor += .03;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5604 updateViewNeeded = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5605 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5606 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5607
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5608 function radiusIncrease()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5609 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5610 if ( bufferFactor > .041 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5611 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5612 bufferFactor -= .03;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5613 updateViewNeeded = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5614 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5615 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5616
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5617 function resetKeyOffset()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5618 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5619 currentKey = 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5620 keyMinTextLeft = centerX + gRadius + buffer - buffer / (keys + 1) / 2 + fontSize / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5621 keyMinAngle = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5622 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5623
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5624 function rgbText(r, g, b)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5625 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5626 var rgbArray =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5627 [
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5628 "rgb(",
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5629 Math.floor(r),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5630 ",",
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5631 Math.floor(g),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5632 ",",
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5633 Math.floor(b),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5634 ")"
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5635 ];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5636
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5637 return rgbArray.join('');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5638 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5639
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5640 function round(number)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5641 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5642 if ( number >= 1 \|\| number <= -1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5643 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5644 return number.toFixed(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5645 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5646 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5647 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5648 return number.toPrecision(1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5649 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5650 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5651
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5652 function roundedRectangle(x, y, width, height, radius)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5653 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5654 if ( radius * 2 > width )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5655 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5656 radius = width / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5657 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5658
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5659 if ( radius * 2 > height )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5660 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5661 radius = height / 2;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5662 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5663
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5664 context.beginPath();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5665 context.arc(x + radius, y + radius, radius, Math.PI, Math.PI * 3 / 2, false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5666 context.lineTo(x + width - radius, y);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5667 context.arc(x + width - radius, y + radius, radius, Math.PI * 3 / 2, Math.PI * 2, false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5668 context.lineTo(x + width, y + height - radius);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5669 context.arc(x + width - radius, y + height - radius, radius, 0, Math.PI / 2, false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5670 context.lineTo(x + radius, y + height);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5671 context.arc(x + radius, y + height - radius, radius, Math.PI / 2, Math.PI, false);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5672 context.lineTo(x, y + radius);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5673 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5674
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5675 function passClick(e)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5676 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5677 mouseClick(e);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5678 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5679
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5680 function searchResultString(results)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5681 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5682 var searchResults = this.searchResults;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5683
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5684 if ( this.isSearchResult )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5685 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5686 // don't count ourselves
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5687 searchResults--;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5688 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5689
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5690 return ' - ' + results + (results > 1 ? ' results' : ' result');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5691 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5692
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5693 function setCallBacks()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5694 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5695 canvas.onselectstart = function(){return false;} // prevent unwanted highlighting
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5696 options.onselectstart = function(){return false;} // prevent unwanted highlighting
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5697 document.onmousemove = mouseMove;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5698 window.onblur = focusLost;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5699 window.onmouseout = focusLost;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5700 document.onkeyup = onKeyUp;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5701 document.onkeydown = onKeyDown;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5702 canvas.onmousedown = mouseClick;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5703 document.onmouseup = mouseUp;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5704 keyControl.onclick = toggleKeys;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5705 collapseCheckBox = document.getElementById('collapse');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5706 collapseCheckBox.checked = collapse;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5707 collapseCheckBox.onclick = handleResize;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5708 collapseCheckBox.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5709 maxAbsoluteDepthText = document.getElementById('maxAbsoluteDepth');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5710 maxAbsoluteDepthButtonDecrease = document.getElementById('maxAbsoluteDepthDecrease');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5711 maxAbsoluteDepthButtonIncrease = document.getElementById('maxAbsoluteDepthIncrease');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5712 maxAbsoluteDepthButtonDecrease.onclick = maxAbsoluteDepthDecrease;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5713 maxAbsoluteDepthButtonIncrease.onclick = maxAbsoluteDepthIncrease;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5714 maxAbsoluteDepthButtonDecrease.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5715 maxAbsoluteDepthButtonIncrease.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5716 fontSizeText = document.getElementById('fontSize');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5717 fontSizeButtonDecrease = document.getElementById('fontSizeDecrease');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5718 fontSizeButtonIncrease = document.getElementById('fontSizeIncrease');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5719 fontSizeButtonDecrease.onclick = fontSizeDecrease;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5720 fontSizeButtonIncrease.onclick = fontSizeIncrease;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5721 fontSizeButtonDecrease.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5722 fontSizeButtonIncrease.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5723 radiusButtonDecrease = document.getElementById('radiusDecrease');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5724 radiusButtonIncrease = document.getElementById('radiusIncrease');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5725 radiusButtonDecrease.onclick = radiusDecrease;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5726 radiusButtonIncrease.onclick = radiusIncrease;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5727 radiusButtonDecrease.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5728 radiusButtonIncrease.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5729 maxAbsoluteDepth = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5730 backButton = document.getElementById('back');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5731 backButton.onclick = navigateBack;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5732 backButton.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5733 forwardButton = document.getElementById('forward');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5734 forwardButton.onclick = navigateForward;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5735 forwardButton.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5736 snapshotButton = document.getElementById('snapshot');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5737 snapshotButton.onclick = snapshot;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5738 snapshotButton.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5739 detailsName = document.getElementById('detailsName');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5740 detailsExpand = document.getElementById('detailsExpand');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5741 detailsInfo = document.getElementById('detailsInfo');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5742 search = document.getElementById('search');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5743 search.onkeyup = onSearchChange;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5744 search.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5745 searchResults = document.getElementById('searchResults');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5746 useHueDiv = document.getElementById('useHueDiv');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5747 linkButton = document.getElementById('linkButton');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5748 linkButton.onclick = showLink;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5749 linkButton.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5750 linkText = document.getElementById('linkText');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5751 linkText.onblur = hideLink;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5752 linkText.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5753 hide(linkText);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5754 var helpButton = document.getElementById('help');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5755 helpButton.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5756 var searchClear = document.getElementById('searchClear');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5757 searchClear.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5758 if ( datasets > 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5759 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5760 datasetDropDown.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5761 var prevDatasetButton = document.getElementById('prevDataset');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5762 prevDatasetButton.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5763 var nextDatasetButton = document.getElementById('nextDataset');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5764 nextDatasetButton.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5765 var lastDatasetButton = document.getElementById('lastDataset');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5766 lastDatasetButton.onmousedown = suppressEvent;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5767 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5768
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5769 image = document.getElementById('hiddenImage');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5770 image.onload = function()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5771 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5772 hiddenPattern = context.createPattern(image, 'repeat');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5773 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5774
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5775 var loadingImageElement = document.getElementById('loadingImage');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5776
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5777 if ( loadingImageElement )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5778 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5779 loadingImage = loadingImageElement.src;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5780 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5781 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5782
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5783 function selectDataset(newDataset)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5784 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5785 lastDataset = currentDataset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5786 currentDataset = newDataset
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5787 if ( datasets > 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5788 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5789 datasetDropDown.selectedIndex = currentDataset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5790 updateDatasetButtons();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5791 datasetAlpha.start = 1.5;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5792 datasetChanged = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5793 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5794 head.setMagnitudes(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5795 head.setDepth(1, 1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5796 head.setMaxDepths();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5797 handleResize();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5798 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5799
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5800 function selectLastDataset()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5801 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5802 selectDataset(lastDataset);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5803 handleResize();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5804 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5805
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5806 function selectNode(newNode)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5807 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5808 if ( selectedNode != newNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5809 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5810 // truncate history at current location to create a new branch
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5811 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5812 nodeHistory.length = nodeHistoryPosition;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5813
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5814 if ( selectedNode != 0 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5815 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5816 nodeHistory.push(selectedNode);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5817 nodeHistoryPosition++;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5818 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5819
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5820 setSelectedNode(newNode);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5821 //updateView();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5822 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5823
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5824 updateDatasetButtons();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5825 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5826
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5827 function setFocus(node)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5828 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5829 if ( node == focusNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5830 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5831 // return;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5832 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5833
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5834 focusNode = node;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5835
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5836 if ( node.href )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5837 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5838 detailsName.innerHTML =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5839 '<a target="_blank" href="' + node.href + '">' + node.name + '</a>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5840 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5841 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5842 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5843 detailsName.innerHTML = node.name;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5844 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5845
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5846 var table = '<table>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5847 //TODO: use CSS margins instead of an additional column
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5848 table += '<tr><td></td><td></td></tr>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5849
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5850 for ( var i = 0; i < node.attributes.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5851 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5852 if ( attributes[i].displayName && node.attributes[i] != undefined )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5853 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5854 var index = node.attributes[i].length == 1 && attributes[i].mono ? 0 : currentDataset;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5855
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5856 if ( typeof node.attributes[i][currentDataset] == 'number' \|\| node.attributes[i][index] != undefined && node.attributes[i][currentDataset] != '' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5857 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5858 var value = node.attributes[i][index];
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5859
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5860 if ( attributes[i].listNode != undefined )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5861 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5862 value =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5863 '<a href="" onclick="showList(' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5864 attributeIndex(attributes[i].listNode) + ',' + i +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5865 ',false);return false;" title="Show list">' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5866 value + '</a>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5867 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5868 else if ( attributes[i].listAll != undefined )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5869 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5870 value =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5871 '<a href="" onclick="showList(' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5872 attributeIndex(attributes[i].listAll) + ',' + i +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5873 ',true);return false;" title="Show list">' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5874 value + '</a>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5875 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5876 else if ( attributes[i].dataNode != undefined && dataEnabled )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5877 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5878 value =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5879 '<a href="" onclick="showData(' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5880 attributeIndex(attributes[i].dataNode) + ',' + i +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5881 ',false);return false;" title="Show data">' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5882 value + '</a>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5883 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5884 else if ( attributes[i].dataAll != undefined && dataEnabled )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5885 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5886 value =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5887 '<a href="" onclick="showData(' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5888 attributeIndex(attributes[i].dataAll) + ',' + i +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5889 ',true);return false;" title="Show data">' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5890 value + '</a>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5891 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5892
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5893 table +=
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5894 '<tr><td><strong>' + attributes[i].displayName + ':</strong></td><td>' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5895 value + '</td></tr>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5896 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5897 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5898 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5899
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5900 table += '</table>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5901 detailsInfo.innerHTML = table;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5902
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5903 detailsExpand.disabled = !focusNode.hasChildren() \|\| focusNode == selectedNode;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5904 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5905
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5906 function setSelectedNode(newNode)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5907 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5908 if ( selectedNode && selectedNode.hasParent(newNode) )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5909 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5910 zoomOut = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5911 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5912 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5913 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5914 zoomOut = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5915 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5916
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5917 selectedNodeLast = selectedNode;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5918 selectedNode = newNode;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5919
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5920 //if ( focusNode != selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5921 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5922 setFocus(selectedNode);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5923 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5924 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5925
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5926 function waitForData(dataWindow, target, title, time, postUrl, postVar)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5927 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5928 if ( nodeData.length == target )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5929 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5930 if ( postUrl != undefined )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5931 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5932 for ( var i = 0; i < nodeData.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5933 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5934 nodeData[i] = nodeData[i].replace(/\n/g, ',');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5935 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5936
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5937 var postString = nodeData.join('');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5938 postString = postString.slice(0, -1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5939
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5940 dataWindow.document.body.removeChild(dataWindow.document.getElementById('loading'));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5941 document.body.removeChild(document.getElementById('data'));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5942
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5943 post(postUrl, postVar, postString, dataWindow);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5944 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5945 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5946 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5947 //dataWindow.document.body.removeChild(dataWindow.document.getElementById('loading'));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5948 //document.body.removeChild(document.getElementById('data'));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5949
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5950 dataWindow.document.open();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5951 dataWindow.document.write('<pre>' + nodeData.join('') + '</pre>');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5952 dataWindow.document.close();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5953 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5954
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5955 dataWindow.document.title = title; // replace after document.write()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5956 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5957 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5958 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5959 var date = new Date();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5960
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5961 if ( date.getTime() - time > 10000 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5962 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5963 dataWindow.document.body.removeChild(dataWindow.document.getElementById('loading'));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5964 document.body.removeChild(document.getElementById('data'));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5965 dataWindow.document.body.innerHTML =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5966 'Timed out loading supplemental files for:<br/>' + document.location;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5967 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5968 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5969 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5970 setTimeout(function() {waitForData(dataWindow, target, title, time, postUrl, postVar);}, 100);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5971 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5972 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5973 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5974
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5975 function data(newData)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5976 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5977 nodeData.push(newData);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5978 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5979
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5980 function enableData()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5981 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5982 dataEnabled = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5983 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5984
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5985 function showData(indexData, indexAttribute, summary)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5986 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5987 var dataWindow = window.open('', '_blank');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5988 var title = 'Krona - ' + attributes[indexAttribute].displayName + ' - ' + focusNode.name;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5989 dataWindow.document.title = title;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5990
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5991 nodeData = new Array();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5992
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5993 if ( dataWindow && dataWindow.document && dataWindow.document.body != null )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5994 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5995 //var loadImage = document.createElement('img');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5996 //loadImage.src = "file://localhost/Users/ondovb/Krona/KronaTools/img/loading.gif";
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5997 //loadImage.id = "loading";
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5998 //loadImage.alt = "Loading...";
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	5999 //dataWindow.document.body.appendChild(loadImage);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6000 dataWindow.document.body.innerHTML =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6001 '<img id="loading" src="' + loadingImage + '" alt="Loading..."></img>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6002 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6003
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6004 var scripts = document.createElement('div');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6005 scripts.id = 'data';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6006 document.body.appendChild(scripts);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6007
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6008 var files = focusNode.getData(indexData, summary);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6009
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6010 var date = new Date();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6011 var time = date.getTime();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6012
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6013 for ( var i = 0; i < files.length; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6014 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6015 var script = document.createElement('script');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6016 script.src = files[i] + '?' + time;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6017 scripts.appendChild(script);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6018 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6019
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6020 waitForData(dataWindow, files.length, title, time, attributes[indexAttribute].postUrl, attributes[indexAttribute].postVar);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6021
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6022 return false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6023 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6024
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6025 function showList(indexList, indexAttribute, summary)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6026 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6027 var list = focusNode.getList(indexList, summary);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6028
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6029 if ( attributes[indexAttribute].postUrl != undefined )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6030 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6031 post(attributes[indexAttribute].postUrl, attributes[indexAttribute].postVar, list.join(','));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6032 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6033 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6034 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6035 var dataWindow = window.open('', '_blank');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6036
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6037 if ( true \|\| navigator.appName == 'Microsoft Internet Explorer' ) // :(
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6038 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6039 dataWindow.document.open();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6040 dataWindow.document.write('<pre>' + list.join('\n') + '</pre>');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6041 dataWindow.document.close();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6042 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6043 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6044 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6045 var pre = document.createElement('pre');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6046 dataWindow.document.body.appendChild(pre);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6047 pre.innerHTML = list;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6048 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6049
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6050 dataWindow.document.title = 'Krona - ' + attributes[indexAttribute].displayName + ' - ' + focusNode.name;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6051 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6052 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6053
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6054 function snapshot()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6055 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6056 svg = svgHeader();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6057
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6058 resetKeyOffset();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6059
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6060 snapshotMode = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6061
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6062 selectedNode.draw(false, true);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6063 selectedNode.draw(true, true);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6064
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6065 if ( focusNode != 0 && focusNode != selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6066 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6067 context.globalAlpha = 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6068 focusNode.drawHighlight(true);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6069 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6070
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6071 if ( hueDisplayName && useHue() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6072 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6073 drawLegendSVG();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6074 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6075
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6076 snapshotMode = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6077
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6078 svg += svgFooter();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6079
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6080 var snapshotWindow = window.open('', '_blank', '', 'replace=false');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6081 snapshotWindow.document.write('<html><body><a href="data:image/svg+xml,' + encodeURIComponent(svg) + '" download="snapshot.svg">Download Snapshot</a></html></body>');
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6082 snapshotWindow.document.write(svg);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6083 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6084
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6085 function save()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6086 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6087 alert(document.body.innerHTML);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6088 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6089
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6090 function spacer()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6091 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6092 if ( snapshotMode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6093 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6094 return '   ';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6095 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6096 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6097 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6098 return ' ';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6099 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6100 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6101
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6102 function suppressEvent(e)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6103 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6104 e.cancelBubble = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6105 if (e.stopPropagation) e.stopPropagation();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6106 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6107
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6108 function svgFooter()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6109 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6110 return '</svg>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6111 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6112
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6113 function svgHeader()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6114 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6115 var patternWidth = fontSize * .6;//radius / 50;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6116
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6117 return '\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6118 <?xml version="1.0" standalone="no"?>\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6119 <!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" \
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6120 "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6121 <svg width="' + imageWidth + '" height="' + imageHeight + '" version="1.1"\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6122 xmlns="http://www.w3.org/2000/svg">\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6123 <title>Krona (snapshot) - ' +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6124 (datasets > 1 ? datasetNames[currentDataset] + ' - ' : '') + selectedNode.name +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6125 '</title>\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6126 <defs>\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6127 <style type="text/css">\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6128 text {font-size: ' + fontSize + 'px; font-family: ' + fontFamily + '; dominant-baseline:central}\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6129 path {stroke-width:' + thinLineWidth * fontSize / 12 + ';}\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6130 path.wedge {stroke:none}\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6131 path.line {fill:none;stroke:black;}\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6132 line {stroke:black;stroke-width:' + thinLineWidth * fontSize / 12 + ';}\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6133 line.tick {stroke-width:' + thinLineWidth * fontSize / 6 + ';}\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6134 line.pattern {stroke-width:' + thinLineWidth * fontSize / 18 + ';}\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6135 circle {fill:none;stroke:black;stroke-width:' + thinLineWidth * fontSize / 12 + ';}\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6136 rect {stroke:black;stroke-width:' + thinLineWidth * fontSize / 12 + ';}\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6137 .highlight {stroke:black;stroke-width:'+ highlightLineWidth * fontSize / 12 + ';}\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6138 .searchHighlight {fill:rgb(255, 255, 100);stroke:none;}\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6139 </style>\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6140 <pattern id="hiddenPattern" patternUnits="userSpaceOnUse" \
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6141 x="0" y="0" width="' + patternWidth + '" height="' + patternWidth + '">\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6142 <line class="pattern" x1="0" y1="0" x2="' + patternWidth / 2 + '" y2="' + patternWidth / 2 + '"/>\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6143 <line class="pattern" x1="' + patternWidth / 2 + '" y1="' + patternWidth +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6144 '" x2="' + patternWidth + '" y2="' + patternWidth / 2 + '"/>\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6145 </pattern>\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6146 </defs>\
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6147 ';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6148 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6149
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6150 function svgText(text, x, y, anchor, bold, color)
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6151 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6152 if ( typeof(anchor) == 'undefined' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6153 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6154 anchor = 'start';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6155 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6156
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6157 if ( color == undefined )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6158 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6159 color = 'black';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6160 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6161
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6162 return '<text x="' + x + '" y="' + y +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6163 '" style="font-color:' + color + ';font-weight:' + (bold ? 'bold' : 'normal') +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6164 '" text-anchor="' + anchor + '">' + text + '</text>';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6165 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6166
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6167 function toggleKeys()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6168 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6169 if ( showKeys )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6170 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6171 keyControl.value = '…';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6172 showKeys = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6173 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6174 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6175 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6176 keyControl.value = 'x';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6177 showKeys = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6178 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6179
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6180 updateKeyControl();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6181
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6182 if ( progress == 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6183 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6184 draw();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6185 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6186 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6187
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6188 function update()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6189 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6190 if ( ! head )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6191 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6192 return;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6193 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6194
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6195 if ( mouseDown && focusNode != selectedNode )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6196 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6197 var date = new Date();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6198
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6199 if ( date.getTime() - mouseDownTime > quickLookHoldLength )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6200 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6201 if ( focusNode.hasChildren() )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6202 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6203 expand(focusNode);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6204 quickLook = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6205 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6206 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6207 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6208
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6209 if ( updateViewNeeded )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6210 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6211 resize();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6212 mouseX = -1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6213 mouseY = -1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6214
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6215 collapse = collapseCheckBox.checked;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6216 compress = true;//compressCheckBox.checked;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6217 shorten = true;//shortenCheckBox.checked;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6218
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6219 checkSelectedCollapse();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6220 updateMaxAbsoluteDepth();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6221
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6222 if ( focusNode.getCollapse() \|\| focusNode.depth > maxAbsoluteDepth )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6223 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6224 setFocus(selectedNode);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6225 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6226 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6227 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6228 setFocus(focusNode);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6229 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6230
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6231 updateView();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6232
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6233 updateViewNeeded = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6234 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6235
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6236 var date = new Date();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6237 progress = (date.getTime() - tweenStartTime) / tweenLength;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6238 // progress += .01;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6239
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6240 if ( progress >= 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6241 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6242 progress = 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6243 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6244
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6245 if ( progress != progressLast )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6246 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6247 tweenFactor =// progress;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6248 (1 / (1 + Math.exp(-tweenCurvature * (progress - .5))) - .5) /
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6249 (tweenMax - .5) / 2 + .5;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6250
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6251 if ( progress == 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6252 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6253 snapshotButton.disabled = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6254 zoomOut = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6255
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6256 //updateKeyControl();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6257
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6258 if ( ! quickLook )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6259 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6260 //checkHighlight();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6261 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6262
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6263
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6264 if ( fpsDisplay )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6265 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6266 fpsDisplay.innerHTML = 'fps: ' + Math.round(tweenFrames * 1000 / tweenLength);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6267 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6268 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6269
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6270 draw();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6271 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6272
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6273 progressLast = progress;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6274 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6275
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6276 function updateDatasetButtons()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6277 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6278 if ( datasets == 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6279 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6280 return;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6281 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6282
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6283 var node = selectedNode ? selectedNode : head;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6284
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6285 datasetButtonLast.disabled =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6286 node.attributes[magnitudeIndex][lastDataset] == 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6287
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6288 datasetButtonPrev.disabled = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6289 datasetButtonNext.disabled = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6290
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6291 for ( var i = 0; i < datasets; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6292 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6293 var disable = node.attributes[magnitudeIndex][i] == 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6294
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6295 datasetDropDown.options[i].disabled = disable;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6296
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6297 if ( ! disable )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6298 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6299 if ( i != currentDataset )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6300 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6301 datasetButtonPrev.disabled = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6302 datasetButtonNext.disabled = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6303 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6304 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6305 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6306 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6307
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6308 function updateDatasetWidths()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6309 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6310 if ( datasets > 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6311 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6312 for ( var i = 0; i < datasets; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6313 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6314 context.font = fontBold;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6315 var dim = context.measureText(datasetNames[i]);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6316 datasetWidths[i] = dim.width;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6317 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6318 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6319 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6320
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6321 function updateKeyControl()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6322 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6323 if ( keys == 0 )//\|\| progress != 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6324 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6325 keyControl.style.visibility = 'hidden';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6326 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6327 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6328 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6329 keyControl.style.visibility = 'visible';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6330 keyControl.style.right = margin + 'px';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6331
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6332 if ( showKeys )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6333 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6334 keyControl.style.top =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6335 imageHeight -
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6336 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6337 keys * (keySize + keyBuffer) -
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6338 keyBuffer +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6339 margin +
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6340 keyControl.clientHeight * 1.5
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6341 ) + 'px';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6342 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6343 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6344 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6345 keyControl.style.top =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6346 (imageHeight - margin - keyControl.clientHeight) + 'px';
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6347 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6348 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6349 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6350
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6351 function updateView()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6352 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6353 if ( selectedNode.depth > maxAbsoluteDepth - 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6354 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6355 maxAbsoluteDepth = selectedNode.depth + 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6356 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6357
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6358 highlightedNode = selectedNode;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6359
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6360 angleFactor = 2 * Math.PI / (selectedNode.magnitude);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6361
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6362 maxPossibleDepth = Math.floor(gRadius / (fontSize * minRingWidthFactor));
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6363
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6364 if ( maxPossibleDepth < 4 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6365 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6366 maxPossibleDepth = 4;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6367 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6368
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6369 var minRadiusInner = fontSize * 8 / gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6370 var minRadiusFirst = fontSize * 6 / gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6371 var minRadiusOuter = fontSize * 5 / gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6372
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6373 if ( .25 < minRadiusInner )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6374 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6375 minRadiusInner = .25;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6376 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6377
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6378 if ( .15 < minRadiusFirst )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6379 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6380 minRadiusFirst = .15;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6381 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6382
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6383 if ( .15 < minRadiusOuter )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6384 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6385 minRadiusOuter = .15;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6386 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6387
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6388 // visibility of nodes depends on the depth they are displayed at,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6389 // so we need to set the max depth assuming they can all be displayed
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6390 // and iterate it down based on the deepest child node we can display
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6391 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6392 var maxDepth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6393 var newMaxDepth = selectedNode.getMaxDepth() - selectedNode.getDepth() + 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6394 //
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6395 do
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6396 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6397 maxDepth = newMaxDepth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6398
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6399 if ( ! compress && maxDepth > maxPossibleDepth )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6400 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6401 maxDepth = maxPossibleDepth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6402 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6403
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6404 if ( compress )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6405 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6406 compressedRadii = new Array(maxDepth);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6407
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6408 compressedRadii[0] = minRadiusInner;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6409
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6410 var offset = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6411
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6412 while
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6413 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6414 lerp
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6415 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6416 Math.atan(offset + 2),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6417 Math.atan(offset + 1),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6418 Math.atan(maxDepth + offset - 1),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6419 minRadiusInner,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6420 1 - minRadiusOuter
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6421 ) - minRadiusInner > minRadiusFirst &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6422 offset < 10
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6423 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6424 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6425 offset++;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6426 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6427
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6428 offset--;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6429
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6430 for ( var i = 1; i < maxDepth; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6431 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6432 compressedRadii[i] = lerp
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6433 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6434 Math.atan(i + offset),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6435 Math.atan(offset),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6436 Math.atan(maxDepth + offset - 1),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6437 minRadiusInner,
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6438 1 - minRadiusOuter
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6439 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6440 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6441 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6442 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6443 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6444 nodeRadius = 1 / maxDepth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6445 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6446
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6447 newMaxDepth = selectedNode.maxVisibleDepth(maxDepth);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6448
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6449 if ( compress )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6450 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6451 if ( newMaxDepth <= maxPossibleDepth )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6452 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6453 // compress
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6454 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6455 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6456 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6457 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6458 if ( newMaxDepth > maxPossibleDepth )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6459 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6460 newMaxDepth = maxPossibleDepth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6461 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6462 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6463 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6464 while ( newMaxDepth < maxDepth );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6465
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6466 maxDisplayDepth = maxDepth;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6467
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6468 lightnessFactor = (lightnessMax - lightnessBase) / (maxDepth > 8 ? 8 : maxDepth);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6469 keys = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6470
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6471 nLabelOffsets = new Array(maxDisplayDepth - 1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6472 labelOffsets = new Array(maxDisplayDepth - 1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6473 labelLastNodes = new Array(maxDisplayDepth - 1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6474 labelFirstNodes = new Array(maxDisplayDepth - 1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6475
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6476 for ( var i = 0; i < maxDisplayDepth - 1; i++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6477 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6478 if ( compress )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6479 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6480 if ( i == maxDisplayDepth - 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6481 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6482 nLabelOffsets[i] = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6483 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6484 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6485 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6486 var width =
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6487 (compressedRadii[i + 1] - compressedRadii[i]) *
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6488 gRadius;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6489
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6490 nLabelOffsets[i] = Math.floor(width / fontSize / 1.2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6491
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6492 if ( nLabelOffsets[i] > 2 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6493 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6494 nLabelOffsets[i] = min
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6495 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6496 Math.floor(width / fontSize / 1.75),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6497 5
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6498 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6499 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6500 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6501 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6502 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6503 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6504 nLabelOffsets[i] = Math.max
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6505 (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6506 Math.floor(Math.sqrt((nodeRadius * gRadius / fontSize)) * 1.5),
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6507 3
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6508 );
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6509 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6510
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6511 labelOffsets[i] = Math.floor((nLabelOffsets[i] - 1) / 2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6512 labelLastNodes[i] = new Array(nLabelOffsets[i] + 1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6513 labelFirstNodes[i] = new Array(nLabelOffsets[i] + 1);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6514
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6515 for ( var j = 0; j <= nLabelOffsets[i]; j++ )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6516 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6517 // these arrays will allow nodes with neighboring labels to link to
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6518 // each other to determine max label length
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6519
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6520 labelLastNodes[i][j] = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6521 labelFirstNodes[i][j] = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6522 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6523 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6524
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6525 fontSizeText.innerHTML = fontSize;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6526 fontNormal = fontSize + 'px ' + fontFamily;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6527 context.font = fontNormal;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6528 fontBold = 'bold ' + fontSize + 'px ' + fontFamily;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6529 tickLength = fontSize * .7;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6530
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6531 head.setTargets(0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6532
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6533 keySize = ((imageHeight - margin * 3) * 1 / 2) / keys * 3 / 4;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6534
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6535 if ( keySize > fontSize * maxKeySizeFactor )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6536 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6537 keySize = fontSize * maxKeySizeFactor;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6538 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6539
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6540 keyBuffer = keySize / 3;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6541
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6542 fontSizeLast = fontSize;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6543
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6544 if ( datasetChanged )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6545 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6546 datasetChanged = false;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6547 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6548 else
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6549 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6550 datasetAlpha.start = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6551 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6552
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6553 var date = new Date();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6554 tweenStartTime = date.getTime();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6555 progress = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6556 tweenFrames = 0;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6557
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6558 updateKeyControl();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6559 updateDatasetWidths();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6560
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6561 document.title = 'Krona - ' + selectedNode.name;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6562 updateNavigationButtons();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6563 snapshotButton.disabled = true;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6564
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6565 maxAbsoluteDepthText.innerHTML = maxAbsoluteDepth - 1;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6566
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6567 maxAbsoluteDepthButtonDecrease.disabled = (maxAbsoluteDepth == 2);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6568 maxAbsoluteDepthButtonIncrease.disabled = (maxAbsoluteDepth == head.maxDepth);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6569
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6570 if ( collapse != collapseLast && search.value != '' )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6571 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6572 onSearchChange();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6573 collapseLast = collapse;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6574 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6575 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6576
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6577 function updateMaxAbsoluteDepth()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6578 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6579 while ( maxAbsoluteDepth > 1 && selectedNode.depth > maxAbsoluteDepth - 1 )
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6580 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6581 selectedNode = selectedNode.getParent();
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6582 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6583 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6584
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6585 function updateNavigationButtons()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6586 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6587 backButton.disabled = (nodeHistoryPosition == 0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6588 // upButton.disabled = (selectedNode.getParent() == 0);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6589 forwardButton.disabled = (nodeHistoryPosition == nodeHistory.length);
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6590 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6591
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6592 function useHue()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6593 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6594 return useHueCheckBox && useHueCheckBox.checked;
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6595 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6596 /*
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6597 function zoomOut()
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6598 {
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6599 return (
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6600 selectedNodeLast != 0 &&
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6601 selectedNodeLast.getDepth() < selectedNode.getDepth());
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6602 }
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6603 */
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6604 </script>
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6605 </head>
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6606 <body>
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6607 <img id="hiddenImage" src="data:image/png;base64,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" style="display:none"/>
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6608 <img id="loadingImage" src="data:image/gif;base64,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" style="display:none"/>
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6609 <img id="logo" 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9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6610 <noscript>Javascript must be enabled to view this page.</noscript>
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6611 <div style="display:none">
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6612 <krona collapse="true" key="true">
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6613 <attributes magnitude="magnitude">
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6614 <attribute display="Total">magnitude</attribute>
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6615 </attributes>
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6616 <datasets>
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6617 <dataset>kt</dataset>
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6618 </datasets>
9f6869226de1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 1400593429eb4e9c6e307df3621825a8b84a6fa7 iuc parents: diff changeset	6619
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Mercurial > repos > iuc > mmseqs2_easy_linclust_clustering

annotate test-data/taxo_result.html @ 0:9f6869226de1 draft