Mercurial > repos > iuc > mmseqs2_taxonomy_assignment

annotate tool-data/mmseqs2_databases.loc.sample @ 1:9e47b28bff57 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
author iuc
date Thu, 27 Mar 2025 16:43:10 +0000
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9e47b28bff57 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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1 #This is a sample file distributed with Galaxy that enables tools
9e47b28bff57 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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2 #to use a directory of metagenomics files.
9e47b28bff57 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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3 #file has this format (white space characters are TAB characters)
9e47b28bff57 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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4 # Tab separated with 6 columns:
9e47b28bff57 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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5 # value : unique value used to generate the database path
9e47b28bff57 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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6 # name: name of the database generate using the date and version of the mmseqs2 databases
9e47b28bff57 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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7 # type : type of the database (aminoacid, nucleotide...)
9e47b28bff57 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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8 # taxonomy : whether or not the database should contain taxonomy information
9e47b28bff57 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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9 # path : final path to mmseqs2 databases on galaxy
9e47b28bff57 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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10 # version : tool version to filter database version depending of the tool
9e47b28bff57 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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11 # value, name, type, taxonomy, path, version
9e47b28bff57 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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12 # eg.
9e47b28bff57 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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13 #SILVA-15.6f452-10022025 SILVA 10022025 nucleotide yes ${__HERE__}/mmseqs2/SILVA 15.6f452