Mercurial > repos > iuc > modify_loom
changeset 6:05631436cdf1 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 58ea92c594280588f6045093d77af6d7d885185d"
| author | iuc |
|---|---|
| date | Sat, 07 May 2022 19:55:14 +0000 |
| parents | 7784821452ac |
| children | 4b0adaa31c95 |
| files | macros.xml modify_loom.xml |
| diffstat | 2 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/macros.xml Fri Feb 19 23:53:44 2021 +0000 +++ b/macros.xml Sat May 07 19:55:14 2022 +0000 @@ -46,7 +46,7 @@ and machine learning packages in Python (statsmodels, scikit-learn). More details on the `AnnData documentation -<https://anndata.readthedocs.io/en/latest/anndata.AnnData.html>`__ +<https://anndata.readthedocs.io/en/latest/generated/anndata.AnnData.html>`__ **Loom data**
--- a/modify_loom.xml Fri Feb 19 23:53:44 2021 +0000 +++ b/modify_loom.xml Sat May 07 19:55:14 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="modify_loom" name="Manipulate loom object" version="@VERSION@+@GALAXY_VERSION@"> +<tool id="modify_loom" name="Manipulate loom object" version="@VERSION@+galaxy1"> <description>Add layers, or row/column attributes to a loom file</description> <macros> <import>macros.xml</import> @@ -6,7 +6,8 @@ <expand macro="requirements"/> <expand macro="version_command"/> <command detect_errors="exit_code"><![CDATA[ -python '$__tool_directory__/modify_loom.py' -f '${input}' +cp '${input}' loom_add_out.loom && +python '$__tool_directory__/modify_loom.py' -f 'loom_add_out.loom' #if $which_add.add_type == "cols": -a cols -c '${which_add.cols}' #else if $which_add.add_type == "cols": @@ -14,7 +15,6 @@ #else if $which_add.add_type == "layers": -a layers -l '${which_add.layers}' #end if -&& cp '${input}' loom_add_out.loom ]]></command> <inputs> <param name="input" type="data" format="loom" label="Loom file"/>