Mercurial > repos > iuc > multiqc
annotate test-data/post_aligner_soft_stats.tabular @ 6:01237d721a9f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
author | iuc |
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date | Sat, 23 Dec 2017 15:57:55 -0500 |
parents | 3bad335ccea9 |
children | e0f4a651c6b9 |
rev | line source |
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6
01237d721a9f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
0
diff
changeset
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1 Sample QUAST_N50-2-1 QUAST_Total_length-2-1 featureCounts_Assigned-1 featureCounts_percent_assigned-1-1 Picard_PCT_PF_READS_ALIGNED-1 Prokka_contigs-1 Prokka_bases-1 Prokka_CDS-1 Prokka_organism-1 Bcftools Stats_number_of_SNPs-1 Bcftools Stats_tstv-1 Bcftools Stats_number_of_records-1 Bcftools Stats_number_of_MNPs-1 Bcftools Stats_number_of_indels-1 Bamtools_duplicates_pct-1-1 Bamtools_mapped_reads_pct-1-1 Picard_PERCENT_DUPLICATION-1 Picard_summed_mean-1 Picard_summed_median-1 HTSeq Count_percent_assigned-2 HTSeq Count_assigned-1 Picard_PCT_RIBOSOMAL_BASES-1 Picard_PCT_MRNA_BASES-1 Samtools Flagstat_mapped_passed-1-1 Samtools Stats_reads_mapped_percent-1 Samtools Stats_raw_total_sequences-1-1 Samtools Stats_reads_mapped-1 Samtools Stats_error_rate-1 Samtools Stats_non_primary_alignments-1 GATK VariantEval_known_titv-1 GATK VariantEval_novel_titv-1 Samblaster_pct_dups-1 |
0
3bad335ccea9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 264fd61d39f252ebb81731bf6cd3349fdb39b306
iuc
parents:
diff
changeset
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2 14892_1#15 115136.0 18435361.0 |
6
01237d721a9f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
0
diff
changeset
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3 70: TopHat on data 1, data 4, and data 3: accepted_hits 321797 70.82267755353567 |
01237d721a9f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
0
diff
changeset
|
4 75: TopHat on data 1, data 6, and data 5: accepted_hits 445012 69.58585803304067 |
01237d721a9f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
0
diff
changeset
|
5 80: TopHat on data 1, data 8, and data 7: accepted_hits 394981 71.76957768385707 |
01237d721a9f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
0
diff
changeset
|
6 85: TopHat on data 1, data 10, and data 9: accepted_hits 437485 72.02454351337069 |
01237d721a9f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
0
diff
changeset
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7 90: TopHat on data 1, data 12, and data 11: accepted_hits 388170 71.33130826437625 |
01237d721a9f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
0
diff
changeset
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8 95: TopHat on data 1, data 14, and data 13: accepted_hits 453929 70.72517103678439 |
0
3bad335ccea9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 264fd61d39f252ebb81731bf6cd3349fdb39b306
iuc
parents:
diff
changeset
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9 D11_H4K16ac_Rep1_R1_fastq_gz 0.983085 |
6
01237d721a9f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
0
diff
changeset
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10 Sample1 30 1629978 1548 Helicobacter pylori |
01237d721a9f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
0
diff
changeset
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11 Sample2 52 162997532523 1548 Escherichia coli |
01237d721a9f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
0
diff
changeset
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12 Test1 4474244.0 1.97 5522770.0 72330.0 902934.0 |
0
3bad335ccea9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 264fd61d39f252ebb81731bf6cd3349fdb39b306
iuc
parents:
diff
changeset
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13 bamtools 0.0 93.125 |
3bad335ccea9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 264fd61d39f252ebb81731bf6cd3349fdb39b306
iuc
parents:
diff
changeset
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14 dataset_114 0.005582 |
6
01237d721a9f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
0
diff
changeset
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15 dataset_197 271.809759 176 |
01237d721a9f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
0
diff
changeset
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16 htseq 0.0 0 |
01237d721a9f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
0
diff
changeset
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17 picard_CollectRnaSeqMetrics_bam 79.62310000000001 |
01237d721a9f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
0
diff
changeset
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18 samtools_flagstat 20689039 |
01237d721a9f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
0
diff
changeset
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19 samtools_stats 100.0 641821.0 641821.0 0.004248509 12111.0 |
01237d721a9f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
0
diff
changeset
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20 varianteval_1_gatk_varianteval 0.0 2.2 |
0
3bad335ccea9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 264fd61d39f252ebb81731bf6cd3349fdb39b306
iuc
parents:
diff
changeset
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21 virtual-normal 1.28 |