Mercurial > repos > iuc > ncbi_datasets
comparison macros.xml @ 5:6c829a430475 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_datasets commit a58a3198ea1b60b6aa9567c6c65f00f8361794f6"
| author | iuc |
|---|---|
| date | Wed, 04 May 2022 13:15:43 +0000 |
| parents | c47a0a93ffd2 |
| children | 5a2656cc84cb |
comparison
equal
deleted
inserted
replaced
| 4:c47a0a93ffd2 | 5:6c829a430475 |
|---|---|
| 1 <macros> | 1 <macros> |
| 2 <token name="@TOOL_VERSION@">13.4.0</token> | 2 <token name="@TOOL_VERSION@">13.14.0</token> |
| 3 <token name="@PROFILE@">20.01</token> | 3 <token name="@PROFILE@">20.01</token> |
| 4 <token name="@LICENSE@">MIT</token> | 4 <token name="@LICENSE@">MIT</token> |
| 5 <token name="@PROFILE_AND_LICENSE@">profile="@PROFILE@" license="@LICENSE@"</token> | 5 <token name="@PROFILE_AND_LICENSE@">profile="@PROFILE@" license="@LICENSE@"</token> |
| 6 <token name="@SETUP_CERTIFICATES@"><![CDATA[ | 6 <token name="@SETUP_CERTIFICATES@"><![CDATA[ |
| 7 ## If running in container use certificate from ca-certificates instead of outdated / missing container certificates | 7 ## If running in container use certificate from ca-certificates instead of outdated / missing container certificates |
| 66 </xml> | 66 </xml> |
| 67 <xml name="includes_genome"> | 67 <xml name="includes_genome"> |
| 68 <expand macro="include" include_what="gbff" include_label="Include GenBank flat file sequence and annotation, if available"/> | 68 <expand macro="include" include_what="gbff" include_label="Include GenBank flat file sequence and annotation, if available"/> |
| 69 <expand macro="include" include_what="gtf" include_label="Include gtf annotation file, if available"/> | 69 <expand macro="include" include_what="gtf" include_label="Include gtf annotation file, if available"/> |
| 70 </xml> | 70 </xml> |
| 71 <xml name="exclude" token_exclude_what="gff3" token_exclude_label="Exclude gff3 annotation file"> | 71 <xml name="exclude" token_exclude_what="gff3" token_exclude_label="Exclude gff3 annotation file" token_checked="false"> |
| 72 <param argument="--exclude-@EXCLUDE_WHAT@" type="boolean" truevalue="--exclude-@EXCLUDE_WHAT@" falsevalue="" label="@EXCLUDE_LABEL@" /> | 72 <param argument="--exclude-@EXCLUDE_WHAT@" type="boolean" truevalue="--exclude-@EXCLUDE_WHAT@" falsevalue="" label="@EXCLUDE_LABEL@" checked="@CHECKED@"/> |
| 73 </xml> | |
| 74 <xml name="anti-exclude" token_exclude_what="gff3" token_exclude_label="Include gff3 annotation file" token_checked="false"> | |
| 75 <param argument="--exclude-@EXCLUDE_WHAT@" type="boolean" falsevalue="--exclude-@EXCLUDE_WHAT@" truevalue="" label="@EXCLUDE_LABEL@" checked="@CHECKED@"/> | |
| 76 </xml> | 73 </xml> |
| 77 <xml name="excludes_genome"> | 74 <xml name="excludes_genome"> |
| 78 <expand macro="anti-exclude" exclude_what="seq" exclude_label="Include genomic sequence file" checked="true"/> | 75 <expand macro="exclude" exclude_what="seq" exclude_label="Exclude genomic sequence file"/> |
| 79 <expand macro="anti-exclude" exclude_what="gff3" exclude_label="Include gff3 annotation file"/> | 76 <expand macro="exclude" exclude_what="gff3" exclude_label="Exclude gff3 annotation file"/> |
| 80 <expand macro="anti-exclude" exclude_what="genomic-cds" exclude_label="Include cds from genomic sequence file"/> | 77 <expand macro="exclude" exclude_what="genomic-cds" exclude_label="Exclude cds from genomic sequence file"/> |
| 81 <expand macro="anti-exclude" exclude_what="protein" exclude_label="Include protein sequence file"/> | 78 <expand macro="exclude" exclude_what="protein" exclude_label="Exclude protein sequence file"/> |
| 82 <expand macro="anti-exclude" exclude_what="rna" exclude_label="Include transcript sequence file"/> | 79 <expand macro="exclude" exclude_what="rna" exclude_label="Exclude transcript sequence file"/> |
| 83 </xml> | 80 </xml> |
| 84 <xml name="excludes_gene"> | 81 <xml name="excludes_gene"> |
| 85 <expand macro="exclude" exclude_what="gene" exclude_label="Exclude gene sequence file"/> | 82 <expand macro="exclude" exclude_what="gene" exclude_label="Exclude gene sequence file"/> |
| 86 <expand macro="exclude" exclude_what="protein" exclude_label="Exclude protein sequence file"/> | 83 <expand macro="exclude" exclude_what="protein" exclude_label="Exclude protein sequence file"/> |
| 87 <expand macro="exclude" exclude_what="rna" exclude_label="Exclude transcript sequence file"/> | 84 <expand macro="exclude" exclude_what="rna" exclude_label="Exclude transcript sequence file"/> |