diff macros.xml @ 5:6c829a430475 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_datasets commit a58a3198ea1b60b6aa9567c6c65f00f8361794f6"

--- a/macros.xml	Mon Mar 07 12:05:56 2022 +0000
+++ b/macros.xml	Wed May 04 13:15:43 2022 +0000
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@TOOL_VERSION@">13.4.0</token>
+    <token name="@TOOL_VERSION@">13.14.0</token>
     <token name="@PROFILE@">20.01</token>
     <token name="@LICENSE@">MIT</token>
     <token name="@PROFILE_AND_LICENSE@">profile="@PROFILE@" license="@LICENSE@"</token>
@@ -68,18 +68,15 @@
         <expand macro="include" include_what="gbff" include_label="Include GenBank flat file sequence and annotation, if available"/>
         <expand macro="include" include_what="gtf" include_label="Include gtf annotation file, if available"/>
     </xml>
-    <xml name="exclude" token_exclude_what="gff3" token_exclude_label="Exclude gff3 annotation file">
-        <param argument="--exclude-@EXCLUDE_WHAT@" type="boolean" truevalue="--exclude-@EXCLUDE_WHAT@" falsevalue="" label="@EXCLUDE_LABEL@" />
-    </xml>
-    <xml name="anti-exclude" token_exclude_what="gff3" token_exclude_label="Include gff3 annotation file" token_checked="false">
-        <param argument="--exclude-@EXCLUDE_WHAT@" type="boolean" falsevalue="--exclude-@EXCLUDE_WHAT@" truevalue="" label="@EXCLUDE_LABEL@" checked="@CHECKED@"/>
+    <xml name="exclude" token_exclude_what="gff3" token_exclude_label="Exclude gff3 annotation file" token_checked="false">
+        <param argument="--exclude-@EXCLUDE_WHAT@" type="boolean" truevalue="--exclude-@EXCLUDE_WHAT@" falsevalue="" label="@EXCLUDE_LABEL@" checked="@CHECKED@"/>
     </xml>
     <xml name="excludes_genome">
-        <expand macro="anti-exclude" exclude_what="seq" exclude_label="Include genomic sequence file" checked="true"/>
-        <expand macro="anti-exclude" exclude_what="gff3" exclude_label="Include gff3 annotation file"/>
-        <expand macro="anti-exclude" exclude_what="genomic-cds" exclude_label="Include cds from genomic sequence file"/>
-        <expand macro="anti-exclude" exclude_what="protein" exclude_label="Include protein sequence file"/>
-        <expand macro="anti-exclude" exclude_what="rna" exclude_label="Include transcript sequence file"/>
+        <expand macro="exclude" exclude_what="seq" exclude_label="Exclude genomic sequence file"/>
+        <expand macro="exclude" exclude_what="gff3" exclude_label="Exclude gff3 annotation file"/>
+        <expand macro="exclude" exclude_what="genomic-cds" exclude_label="Exclude cds from genomic sequence file"/>
+        <expand macro="exclude" exclude_what="protein" exclude_label="Exclude protein sequence file"/>
+        <expand macro="exclude" exclude_what="rna" exclude_label="Exclude transcript sequence file"/>
     </xml>
     <xml name="excludes_gene">
         <expand macro="exclude" exclude_what="gene" exclude_label="Exclude gene sequence file"/>