diff esummary.xml @ 0:92bd8a680b9d draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/esummary.xml	Thu Jul 07 02:41:02 2016 -0400
@@ -0,0 +1,57 @@
+<?xml version="1.0"?>
+<tool id="ncbi_eutils_esummary" name="NCBI ESummary" version="@WRAPPER_VERSION@">
+  <description>fetch summary of history/ids</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements"/>
+  <version_command>python esummary.py --version</version_command>
+  <command detect_errors="aggressive" interpreter="python"><![CDATA[esummary.py
+$db_select
+
+@LIST_OR_HIST@
+
+
+@EMAIL_ARGUMENTS@
+> $default]]></command>
+  <inputs>
+    <expand macro="dbselect"/>
+    <expand macro="list_or_hist"/>
+  </inputs>
+  <outputs>
+    <data format="xml" name="default" label="Summary of NCBI Search"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="qss" value="id_list"/>
+      <param name="id_list" value="10239"/>
+      <param name="db_select" value="taxonomy"/>
+      <output name="default" file="esummary.tax.xml" ftype="xml"/>
+    </test>
+  </tests>
+  <help><![CDATA[
+NCBI Entrez ESummary
+====================
+
+Responds to a list of UIDs from a given database with the corresponding
+document summaries.
+
+Example Queries
+---------------
+
+Search against protein:
+
++----------------------+--------------------------------------+
+| Parameter            | Value                                |
++======================+======================================+
+| NCBI Database to Use | Protein                              |
++----------------------+--------------------------------------+
+| ID List              | 28800982 28628843                    |
++----------------------+--------------------------------------+
+
+@REFERENCES@
+
+@DISCLAIMER@
+      ]]></help>
+  <expand macro="citations"/>
+</tool>