Mercurial > repos > iuc > ncbi_fcs_gx
annotate test-data/output.taxonomy.rpt @ 4:32d058f3462a draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_fcs_gx commit 9da8f86f11185d6bd75ce10de108278db2256bfd
| author | iuc |
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| date | Thu, 21 Nov 2024 02:20:02 +0000 |
| parents | ed1ef564da41 |
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| rev | line source |
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ed1ef564da41
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_fcs_gx commit 25c9d8d297d0e10f92e373f6a959274dedc10433
iuc
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1 ##[["GX taxonomy analysis report", 3, 1], {"git-rev": "v0.5.4-5-g5dfd516", "run-date": "Thu Sep 5 19:38:38 2024", "db": {"build-date": "2022-11-03", "seqs": 3042, "Gbp": 0.28336}, "run-info": {"agg-cvg": 0.455294, "asserted-div": "anml:insects", "inferred-primary-divs": ["prok:CFB group bacteria"], "corrected-primary-divs": ["anml:insects"], "genome-hash": "dbb3380351f70e9b"}}] |
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c228e49365c4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_fcs_gx commit 7f32f58df93f5c295eeacbb4367ec91ed7463dad
iuc
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2 #seq-id seq-len (xp,lc,co,n,mt,pt,pm)-len cvg-by-all sep1 tax-name-1 tax-id-1 div-1 cvg-by-div-1 cvg-by-tax-1 score-1 sep2 tax-id-2 div-2 cvg-by-div-2 cvg-by-tax-2 score-2 sep3 tax-id-3 div-3 cvg-by-div-3 cvg-by-tax-3 score-3 sep4 tax-id-4 div-4 cvg-by-div-4 cvg-by-tax-4 score-4 sep5 reserved result div div_pct_cvg |
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c228e49365c4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_fcs_gx commit 7f32f58df93f5c295eeacbb4367ec91ed7463dad
iuc
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3 JPZV02005859.1 705930 0,1139,0,0,0,0,0 227139 | Bacteroides salyersiae 291644 prok:CFB group bacteria 227139 47267 364 | 1796613 prok:CFB group bacteria 227139 40278 342 | | | n/a low-coverage prok:CFB group bacteria 32 |
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c228e49365c4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_fcs_gx commit 7f32f58df93f5c295eeacbb4367ec91ed7463dad
iuc
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4 JPZV02009577.1 600722 0,65,0,0,0,0,0 374876 | Bacteroides bouchesdurhonensis 1841855 prok:CFB group bacteria 374876 122690 746 | 1796613 prok:CFB group bacteria 374876 125102 742 | | | n/a contaminant(div) prok:CFB group bacteria 62 |
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c228e49365c4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_fcs_gx commit 7f32f58df93f5c295eeacbb4367ec91ed7463dad
iuc
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5 JPZV02016362.1 432265 0,0,0,0,0,0,0 238387 | Bacteroides caecimuris 1796613 prok:CFB group bacteria 238387 78677 508 | 1852362 prok:CFB group bacteria 238387 76183 487 | | | n/a contaminant(div) prok:CFB group bacteria 55 |
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c228e49365c4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_fcs_gx commit 7f32f58df93f5c295eeacbb4367ec91ed7463dad
iuc
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6 JPZV02031416.1 170387 0,60,0,0,0,0,0 48647 | Bacteroides caecimuris 1796613 prok:CFB group bacteria 48647 16469 208 | 435590 prok:CFB group bacteria 48647 15004 201 | | | n/a low-coverage prok:CFB group bacteria 29 |
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c228e49365c4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_fcs_gx commit 7f32f58df93f5c295eeacbb4367ec91ed7463dad
iuc
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7 JPZV02034235.1 131158 0,0,0,0,0,0,0 50739 | Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 1121098 prok:CFB group bacteria 50739 27281 262 | 871325 prok:CFB group bacteria 50739 19889 228 | | | n/a contaminant(div) prok:CFB group bacteria 39 |
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c228e49365c4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_fcs_gx commit 7f32f58df93f5c295eeacbb4367ec91ed7463dad
iuc
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8 JPZV02046037.1 26753 0,0,0,0,0,0,0 1402 | Bacteroides eggerthii 28111 prok:CFB group bacteria 1402 1258 50 | 1121096 prok:CFB group bacteria 1402 803 42 | | | n/a low-coverage prok:CFB group bacteria 5 |