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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_fcs_gx commit 7f32f58df93f5c295eeacbb4367ec91ed7463dad
author iuc
date Fri, 23 Aug 2024 20:55:07 +0000
parents 3cdb96f2855d
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##[["GX taxonomy analysis report", 3, 1], {"git-rev": "v0.5.4-5-g5dfd516", "run-date": "Fri Aug 23 19:21:28 2024", "db": {"build-date": "2022-11-03", "seqs": 3042, "Gbp": 0.28336}, "run-info": {"agg-cvg": 0.455294, "asserted-div": "anml:insects", "inferred-primary-divs": ["prok:CFB group bacteria"], "corrected-primary-divs": ["anml:insects"], "genome-hash": "dbb3380351f70e9b"}}]
#seq-id	seq-len	(xp,lc,co,n,mt,pt,pm)-len	cvg-by-all	sep1	tax-name-1	tax-id-1	div-1	cvg-by-div-1	cvg-by-tax-1	score-1	sep2	tax-id-2	div-2	cvg-by-div-2	cvg-by-tax-2	score-2	sep3	tax-id-3	div-3	cvg-by-div-3	cvg-by-tax-3	score-3	sep4	tax-id-4	div-4	cvg-by-div-4	cvg-by-tax-4	score-4	sep5	reserved	result	div	div_pct_cvg
JPZV02005859.1	705930	0,1139,0,0,0,0,0	227139	|	Bacteroides salyersiae	291644	prok:CFB group bacteria	227139	47267	364	|	1796613	prok:CFB group bacteria	227139	40278	342	|						|						|	n/a	low-coverage	prok:CFB group bacteria	32
JPZV02009577.1	600722	0,65,0,0,0,0,0	374876	|	Bacteroides bouchesdurhonensis	1841855	prok:CFB group bacteria	374876	122690	746	|	1796613	prok:CFB group bacteria	374876	125102	742	|						|						|	n/a	contaminant(div)	prok:CFB group bacteria	62
JPZV02016362.1	432265	0,0,0,0,0,0,0	238387	|	Bacteroides caecimuris	1796613	prok:CFB group bacteria	238387	78677	508	|	1852362	prok:CFB group bacteria	238387	76183	487	|						|						|	n/a	contaminant(div)	prok:CFB group bacteria	55
JPZV02031416.1	170387	0,60,0,0,0,0,0	48647	|	Bacteroides caecimuris	1796613	prok:CFB group bacteria	48647	16469	208	|	435590	prok:CFB group bacteria	48647	15004	201	|						|						|	n/a	low-coverage	prok:CFB group bacteria	29
JPZV02034235.1	131158	0,0,0,0,0,0,0	50739	|	Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223	1121098	prok:CFB group bacteria	50739	27281	262	|	871325	prok:CFB group bacteria	50739	19889	228	|						|						|	n/a	contaminant(div)	prok:CFB group bacteria	39
JPZV02046037.1	26753	0,0,0,0,0,0,0	1402	|	Bacteroides eggerthii	28111	prok:CFB group bacteria	1402	1258	50	|	1121096	prok:CFB group bacteria	1402	803	42	|						|						|	n/a	low-coverage	prok:CFB group bacteria	5