Mercurial > repos > iuc > ncbi_fcs_gx
diff test-data/output.taxonomy.rpt @ 0:3cdb96f2855d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_fcs_gx commit 4a6561ed00e004260be3f3c29d81e814c60e20af
| author | iuc |
|---|---|
| date | Fri, 12 Jan 2024 22:11:39 +0000 |
| parents | |
| children | c228e49365c4 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output.taxonomy.rpt Fri Jan 12 22:11:39 2024 +0000 @@ -0,0 +1,8 @@ +##[["GX taxonomy analysis report", 3, 1], {"git-rev": "+branch--", "run-date": "Wed Jan 10 08:58:52 2024", "db": {"build-date": "2022-11-03", "seqs": 3042, "Gbp": 0.28336}, "run-info": {"agg-cvg": 0.358706, "asserted-div": "anml:insects", "inferred-primary-divs": ["prok:CFB group bacteria"], "corrected-primary-divs": ["anml:insects"]}}] +#seq-id seq-len (xp,lc,co,n,xc)-len cvg-by-all sep1 tax-name-1 tax-id-1 div-1 cvg-by-div-1 cvg-by-tax-1 score-1 sep2 tax-id-2 div-2 cvg-by-div-2 cvg-by-tax-2 score-2 sep3 tax-id-3 div-3 cvg-by-div-3 cvg-by-tax-3 score-3 sep4 tax-id-4 div-4 cvg-by-div-4 cvg-by-tax-4 score-4 sep5 reserved result div div_pct_cvg +JPZV02005859.1 705930 0,1139,0,0,0 159470 | Bacteroides xylanisolvens 371601 prok:CFB group bacteria 159470 49227 393 | 1796613 prok:CFB group bacteria 159470 48051 387 | | | n/a low-coverage prok:CFB group bacteria 23 +JPZV02009577.1 600722 0,65,0,0,0 316464 | Bacteroides caecimuris 1796613 prok:CFB group bacteria 316464 137645 782 | 371601 prok:CFB group bacteria 316464 120328 757 | | | n/a contaminant(div) prok:CFB group bacteria 53 +JPZV02016362.1 432265 0,0,0,0,0 197253 | Bacteroides salyersiae 291644 prok:CFB group bacteria 197253 74527 520 | 246787 prok:CFB group bacteria 197253 74971 512 | | | n/a contaminant(div) prok:CFB group bacteria 46 +JPZV02031416.1 170387 0,60,0,0,0 32395 | Bacteroides sp. CBA7301 2715212 prok:CFB group bacteria 32395 13706 205 | 1297750 prok:CFB group bacteria 32395 12253 201 | | | n/a low-coverage prok:CFB group bacteria 19 +JPZV02034235.1 131158 0,0,0,0,0 33221 | Bacteroides faecichinchillae 871325 prok:CFB group bacteria 33221 17243 230 | 1121098 prok:CFB group bacteria 33221 15138 222 | | | n/a low-coverage prok:CFB group bacteria 25 +JPZV02046037.1 26753 0,0,0,0,0 2720 | Bacteroides graminisolvens DSM 19988 = JCM 15093 1121097 prok:CFB group bacteria 2720 912 45 | 28111 prok:CFB group bacteria 2720 821 45 | | | n/a low-coverage prok:CFB group bacteria 10