Mercurial > repos > iuc > ncbi_fcs_gx
changeset 4:32d058f3462a draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_fcs_gx commit 9da8f86f11185d6bd75ce10de108278db2256bfd
| author | iuc |
|---|---|
| date | Thu, 21 Nov 2024 02:20:02 +0000 |
| parents | ed1ef564da41 |
| children | |
| files | macros.xml ncbi_fcs_gx.xml |
| diffstat | 2 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/macros.xml Wed Oct 09 08:53:18 2024 +0000 +++ b/macros.xml Thu Nov 21 02:20:02 2024 +0000 @@ -6,7 +6,7 @@ </requirements> </xml> <token name="@TOOL_VERSION@">0.5.4</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@PROFILE@">21.05</token> <xml name="biotools"> <xrefs>
--- a/ncbi_fcs_gx.xml Wed Oct 09 08:53:18 2024 +0000 +++ b/ncbi_fcs_gx.xml Thu Nov 21 02:20:02 2024 +0000 @@ -12,11 +12,11 @@ #set manifest_pathname = $mode.config_tag.fields.source_manifest #end if ## skip checksumming the database if the db_state_file exists - if [ ! -e '\${TMPDIR}/sync-files-completed.txt' ]; then + if [ ! -e "\${TMPDIR}/sync-files-completed.txt" ]; then ## copy data to local storage - mkdir -p '\${TMPDIR}' && - sync_files.py get --mft '$manifest_pathname' --dir '\${TMPDIR}' > /dev/null 2>&1 && - touch '\${TMPDIR}/sync-files-completed.txt'; + mkdir -p "\${TMPDIR}" && + sync_files.py get --mft '$manifest_pathname' --dir "\${TMPDIR}" > /dev/null 2>&1 && + touch "\${TMPDIR}/sync-files-completed.txt"; fi && ## run gx GX_NUM_CORES=\${GALAXY_SLOTS:-2} run_gx.py @@ -37,7 +37,7 @@ #if $mode.screen_adv.div: --div '$mode.screen_adv.div' #end if - --gx-db '\${TMPDIR}' + --gx-db "\${TMPDIR}" --out-basename output --action-report true --generate-logfile false