Mercurial > repos > iuc > ngsutils_bam_filter
changeset 5:49bf71fbc574 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ngsutils commit a4b0969b33a68a0ea9ba12291f6694aec24f13ed
| author | iuc |
|---|---|
| date | Tue, 30 Oct 2018 19:13:52 -0400 |
| parents | aecfe10118ed |
| children | 2e957d4c4b95 |
| files | filter.py |
| diffstat | 1 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/filter.py Fri Nov 17 05:17:42 2017 -0500 +++ b/filter.py Tue Oct 30 19:13:52 2018 -0400 @@ -915,13 +915,14 @@ def read_to_unmapped(read): - ''' + r''' Example unmapped read + 2358_2045_1839 | 4 | * | 0 | 0 | * | * | 0 | 0 | GGACGAGAAGGAGTATTTCTCCGAGAACACATTCACGGAGAGTCTAACTC | 0QT\VNO^IIRJKXTIHIKTY\STZZ[XOJKPWLHJQQQ^XPQYIIRQII | PG:Z:bfast | AS:i:- | NH:i:0 | IH:i:1 | HI:i:1 | CS:Z:T10213222020221330022203222011113021130222212230122 | CQ:Z:019=2+><%@.'>52%)'15?90<7;:5+(-49('-7-<>5-@5%<.2%= | CM:i:0 | XA:i:4 Example mapped read: + 2216_1487_198 | 16 | chr11:19915291-19925392 | 5531 | 12 | 24M2D26M | * | 0 | 0 | TCTGTCTGGGTGCAGTAGCTATACGTAATCCCAGCACTTTGGGAGGCCAA | 1C8FZ`M""""""WZ""%"#\I;"`R@D]``ZZ``\QKX\Y]````IK^` | PG:Z:bfast | AS:i:1150 | NM:i:2 | NH:i:10 | IH:i:1 | HI:i:1 | MD:Z:24^CT26 | CS:Z:T00103022001002113210023031213331122121223321221122 | CQ:Z:A8=%;AB<;97<3/9:>>3>@?5&18@-%;866:94=14:=?,%?:7&)1 | CM:i:9 | XA:i:4 | XE:Z:-------23322---2-11----2---------------------------- - ''' # TODO: rewrite read properties to unmapped state # if colorspace: convert CS to NT directly