annotate obo2owl.xml @ 0:54d363d435f0 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6

<tool id="onto_tk_obo2owl" name="Convert OBO to OWL" version="@VERSION@.0">
    <description></description>
    <macros>
        <import>onto_macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <command detect_errors="aggressive">
    obo2owl.pl
        -f '$input'
        -u '$url'
        -w '$oboinowlurl' > '$output'
    </command>
    <inputs>
        <expand macro="input_ontology" />
        <param name="url" type="text" value="http://" label="URL">
            <expand macro="sanitize_urls" />
        </param>
        <param name="oboinowlurl" type="text" value="http://" label="OBOinOWL URL">
            <expand macro="sanitize_urls" />
        </param>
    </inputs>
    <outputs>
        <data format="owl" name="output" />
    </outputs>
    <tests>
        <test>
            <param name="input" value="pre_cco_core.obo"/>
            <output name="output" file="pre_cco_core.owl" lines_diff="2" />
        </test>
    </tests>
    <help>
This tool transforms an OBO formatted ontology (such as the Gene Ontology) to OWL.

    </help>
    <expand macro="citations" />
</tool>