Mercurial > repos > iuc > onto_tk_obo2rdf
comparison obo2rdf.xml @ 0:7568445199b6 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
author | iuc |
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date | Fri, 10 Nov 2017 11:34:31 -0500 |
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-1:000000000000 | 0:7568445199b6 |
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1 <tool id="onto_tk_obo2rdf" name="Convert OBO to RDF" version="@VERSION@.0"> | |
2 <description></description> | |
3 <macros> | |
4 <import>onto_macros.xml</import> | |
5 </macros> | |
6 <expand macro="requirements" /> | |
7 <command detect_errors="aggressive"> | |
8 obo2rdf.pl | |
9 -f '$input' | |
10 #if $url: | |
11 -u '$url' | |
12 #end if | |
13 -n '$namespace' | |
14 > '$output' | |
15 </command> | |
16 <inputs> | |
17 <expand macro="input_ontology" /> | |
18 <param name="url" type="text" value="" optional="True" label="URL"> | |
19 <expand macro="sanitize_urls" /> | |
20 </param> | |
21 <param name="namespace" type="text" value="" label="Namespace"> | |
22 <expand macro="sanitize_ids" /> | |
23 </param> | |
24 </inputs> | |
25 <outputs> | |
26 <data format="rdf" name="output" /> | |
27 </outputs> | |
28 <tests> | |
29 <test> | |
30 <param name="input" value="pre_cco_core.obo" ftype="obo"/> | |
31 <param name="namespace" value="SBB"/> | |
32 <output name="output" ftype="rdf"> | |
33 <assert_contents> | |
34 <has_text text="holds between distinct material continuants when one succeeds the other across a temporal divide" /> | |
35 </assert_contents> | |
36 </output> | |
37 </test> | |
38 </tests> | |
39 <help> | |
40 This tool transforms an OBO formatted ontology (such as the Gene Ontology) to RDF/XML. | |
41 | |
42 </help> | |
43 <expand macro="citations" /> | |
44 </tool> | |
45 |