Mercurial > repos > iuc > onto_tk_obo2rdf
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
author | iuc |
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date | Fri, 10 Nov 2017 11:34:31 -0500 |
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<tool id="onto_tk_obo2rdf" name="Convert OBO to RDF" version="@VERSION@.0"> <description></description> <macros> <import>onto_macros.xml</import> </macros> <expand macro="requirements" /> <command detect_errors="aggressive"> obo2rdf.pl -f '$input' #if $url: -u '$url' #end if -n '$namespace' > '$output' </command> <inputs> <expand macro="input_ontology" /> <param name="url" type="text" value="" optional="True" label="URL"> <expand macro="sanitize_urls" /> </param> <param name="namespace" type="text" value="" label="Namespace"> <expand macro="sanitize_ids" /> </param> </inputs> <outputs> <data format="rdf" name="output" /> </outputs> <tests> <test> <param name="input" value="pre_cco_core.obo" ftype="obo"/> <param name="namespace" value="SBB"/> <output name="output" ftype="rdf"> <assert_contents> <has_text text="holds between distinct material continuants when one succeeds the other across a temporal divide" /> </assert_contents> </output> </test> </tests> <help> This tool transforms an OBO formatted ontology (such as the Gene Ontology) to RDF/XML. </help> <expand macro="citations" /> </tool>