Mercurial > repos > iuc > orthofinder_onlygroups
comparison test-data/results_fromblast/Statistics_PerSpecies.csv @ 0:bfb20dbe1309 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
| author | iuc |
|---|---|
| date | Tue, 24 Oct 2017 06:40:40 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:bfb20dbe1309 |
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| 1 Mycoplasma_agalactiae Mycoplasma_gallisepticum Mycoplasma_genitalium Mycoplasma_hyopneumoniae | |
| 2 Number of genes 820 763 476 674 | |
| 3 Number of genes in orthogroups 503 561 429 445 | |
| 4 Number of unassigned genes 317 202 47 229 | |
| 5 Percentage of genes in orthogroups 61.3 73.5 90.1 66.0 | |
| 6 Percentage of unassigned genes 38.7 26.5 9.9 34.0 | |
| 7 Number of orthogroups containing species 430 459 392 416 | |
| 8 Percentage of orthogroups containing species 80.2 85.6 73.1 77.6 | |
| 9 Number of species-specific orthogroups 3 2 0 1 | |
| 10 Number of genes in species-specific orthogroups 34 61 0 5 | |
| 11 Percentage of genes in species-specific orthogroups 4.1 8.0 0.0 0.7 | |
| 12 | |
| 13 | |
| 14 Number of genes per-species in orthogroup Number of orthogroups Number of orthogroups Number of orthogroups Number of orthogroups | |
| 15 '0 106 77 144 120 | |
| 16 '1 398 427 368 405 | |
| 17 '2 21 21 17 6 | |
| 18 '3 6 6 5 1 | |
| 19 '4 2 2 1 1 | |
| 20 '5 2 2 0 1 | |
| 21 '6 0 0 0 0 | |
| 22 '7 0 0 0 0 | |
| 23 '8 0 0 1 2 | |
| 24 '9 0 0 0 0 | |
| 25 '10 0 0 0 0 | |
| 26 11-15 0 0 0 0 | |
| 27 16-20 0 0 0 0 | |
| 28 21-50 1 0 0 0 | |
| 29 51-100 0 1 0 0 | |
| 30 101-150 0 0 0 0 | |
| 31 151-200 0 0 0 0 | |
| 32 201-500 0 0 0 0 | |
| 33 501-1000 0 0 0 0 | |
| 34 '1001+ 0 0 0 0 | |
| 35 | |
| 36 Number of genes per-species in orthogroup Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups | |
| 37 '0 19.8 14.4 26.9 22.4 | |
| 38 '1 74.3 79.7 68.7 75.6 | |
| 39 '2 3.9 3.9 3.2 1.1 | |
| 40 '3 1.1 1.1 0.9 0.2 | |
| 41 '4 0.4 0.4 0.2 0.2 | |
| 42 '5 0.4 0.4 0.0 0.2 | |
| 43 '6 0.0 0.0 0.0 0.0 | |
| 44 '7 0.0 0.0 0.0 0.0 | |
| 45 '8 0.0 0.0 0.2 0.4 | |
| 46 '9 0.0 0.0 0.0 0.0 | |
| 47 '10 0.0 0.0 0.0 0.0 | |
| 48 11-15 0.0 0.0 0.0 0.0 | |
| 49 16-20 0.0 0.0 0.0 0.0 | |
| 50 21-50 0.2 0.0 0.0 0.0 | |
| 51 51-100 0.0 0.2 0.0 0.0 | |
| 52 101-150 0.0 0.0 0.0 0.0 | |
| 53 151-200 0.0 0.0 0.0 0.0 | |
| 54 201-500 0.0 0.0 0.0 0.0 | |
| 55 501-1000 0.0 0.0 0.0 0.0 | |
| 56 '1001+ 0.0 0.0 0.0 0.0 | |
| 57 | |
| 58 Number of genes per-species in orthogroup Number of genes Number of genes Number of genes Number of genes | |
| 59 '0 0 0 0 0 | |
| 60 '1 398 427 368 405 | |
| 61 '2 42 42 34 12 | |
| 62 '3 18 18 15 3 | |
| 63 '4 8 8 4 4 | |
| 64 '5 10 10 0 5 | |
| 65 '6 0 0 0 0 | |
| 66 '7 0 0 0 0 | |
| 67 '8 0 0 8 16 | |
| 68 '9 0 0 0 0 | |
| 69 '10 0 0 0 0 | |
| 70 11-15 0 0 0 0 | |
| 71 16-20 0 0 0 0 | |
| 72 21-50 27 0 0 0 | |
| 73 51-100 0 56 0 0 | |
| 74 101-150 0 0 0 0 | |
| 75 151-200 0 0 0 0 | |
| 76 201-500 0 0 0 0 | |
| 77 501-1000 0 0 0 0 | |
| 78 '1001+ 0 0 0 0 | |
| 79 | |
| 80 Number of genes per-species in orthogroup Percentage of genes Percentage of genes Percentage of genes Percentage of genes | |
| 81 '0 0.0 0.0 0.0 0.0 | |
| 82 '1 48.5 56.0 77.3 60.1 | |
| 83 '2 5.1 5.5 7.1 1.8 | |
| 84 '3 2.2 2.4 3.2 0.4 | |
| 85 '4 1.0 1.0 0.8 0.6 | |
| 86 '5 1.2 1.3 0.0 0.7 | |
| 87 '6 0.0 0.0 0.0 0.0 | |
| 88 '7 0.0 0.0 0.0 0.0 | |
| 89 '8 0.0 0.0 1.7 2.4 | |
| 90 '9 0.0 0.0 0.0 0.0 | |
| 91 '10 0.0 0.0 0.0 0.0 | |
| 92 11-15 0.0 0.0 0.0 0.0 | |
| 93 16-20 0.0 0.0 0.0 0.0 | |
| 94 21-50 3.3 0.0 0.0 0.0 | |
| 95 51-100 0.0 7.3 0.0 0.0 | |
| 96 101-150 0.0 0.0 0.0 0.0 | |
| 97 151-200 0.0 0.0 0.0 0.0 | |
| 98 201-500 0.0 0.0 0.0 0.0 | |
| 99 501-1000 0.0 0.0 0.0 0.0 | |
| 100 '1001+ 0.0 0.0 0.0 0.0 |