Mercurial > repos > iuc > orthofinder_onlygroups
diff test-data/results_fromblast/Statistics_PerSpecies.csv @ 0:bfb20dbe1309 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
| author | iuc |
|---|---|
| date | Tue, 24 Oct 2017 06:40:40 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/results_fromblast/Statistics_PerSpecies.csv Tue Oct 24 06:40:40 2017 -0400 @@ -0,0 +1,100 @@ + Mycoplasma_agalactiae Mycoplasma_gallisepticum Mycoplasma_genitalium Mycoplasma_hyopneumoniae +Number of genes 820 763 476 674 +Number of genes in orthogroups 503 561 429 445 +Number of unassigned genes 317 202 47 229 +Percentage of genes in orthogroups 61.3 73.5 90.1 66.0 +Percentage of unassigned genes 38.7 26.5 9.9 34.0 +Number of orthogroups containing species 430 459 392 416 +Percentage of orthogroups containing species 80.2 85.6 73.1 77.6 +Number of species-specific orthogroups 3 2 0 1 +Number of genes in species-specific orthogroups 34 61 0 5 +Percentage of genes in species-specific orthogroups 4.1 8.0 0.0 0.7 + + +Number of genes per-species in orthogroup Number of orthogroups Number of orthogroups Number of orthogroups Number of orthogroups +'0 106 77 144 120 +'1 398 427 368 405 +'2 21 21 17 6 +'3 6 6 5 1 +'4 2 2 1 1 +'5 2 2 0 1 +'6 0 0 0 0 +'7 0 0 0 0 +'8 0 0 1 2 +'9 0 0 0 0 +'10 0 0 0 0 +11-15 0 0 0 0 +16-20 0 0 0 0 +21-50 1 0 0 0 +51-100 0 1 0 0 +101-150 0 0 0 0 +151-200 0 0 0 0 +201-500 0 0 0 0 +501-1000 0 0 0 0 +'1001+ 0 0 0 0 + +Number of genes per-species in orthogroup Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups +'0 19.8 14.4 26.9 22.4 +'1 74.3 79.7 68.7 75.6 +'2 3.9 3.9 3.2 1.1 +'3 1.1 1.1 0.9 0.2 +'4 0.4 0.4 0.2 0.2 +'5 0.4 0.4 0.0 0.2 +'6 0.0 0.0 0.0 0.0 +'7 0.0 0.0 0.0 0.0 +'8 0.0 0.0 0.2 0.4 +'9 0.0 0.0 0.0 0.0 +'10 0.0 0.0 0.0 0.0 +11-15 0.0 0.0 0.0 0.0 +16-20 0.0 0.0 0.0 0.0 +21-50 0.2 0.0 0.0 0.0 +51-100 0.0 0.2 0.0 0.0 +101-150 0.0 0.0 0.0 0.0 +151-200 0.0 0.0 0.0 0.0 +201-500 0.0 0.0 0.0 0.0 +501-1000 0.0 0.0 0.0 0.0 +'1001+ 0.0 0.0 0.0 0.0 + +Number of genes per-species in orthogroup Number of genes Number of genes Number of genes Number of genes +'0 0 0 0 0 +'1 398 427 368 405 +'2 42 42 34 12 +'3 18 18 15 3 +'4 8 8 4 4 +'5 10 10 0 5 +'6 0 0 0 0 +'7 0 0 0 0 +'8 0 0 8 16 +'9 0 0 0 0 +'10 0 0 0 0 +11-15 0 0 0 0 +16-20 0 0 0 0 +21-50 27 0 0 0 +51-100 0 56 0 0 +101-150 0 0 0 0 +151-200 0 0 0 0 +201-500 0 0 0 0 +501-1000 0 0 0 0 +'1001+ 0 0 0 0 + +Number of genes per-species in orthogroup Percentage of genes Percentage of genes Percentage of genes Percentage of genes +'0 0.0 0.0 0.0 0.0 +'1 48.5 56.0 77.3 60.1 +'2 5.1 5.5 7.1 1.8 +'3 2.2 2.4 3.2 0.4 +'4 1.0 1.0 0.8 0.6 +'5 1.2 1.3 0.0 0.7 +'6 0.0 0.0 0.0 0.0 +'7 0.0 0.0 0.0 0.0 +'8 0.0 0.0 1.7 2.4 +'9 0.0 0.0 0.0 0.0 +'10 0.0 0.0 0.0 0.0 +11-15 0.0 0.0 0.0 0.0 +16-20 0.0 0.0 0.0 0.0 +21-50 3.3 0.0 0.0 0.0 +51-100 0.0 7.3 0.0 0.0 +101-150 0.0 0.0 0.0 0.0 +151-200 0.0 0.0 0.0 0.0 +201-500 0.0 0.0 0.0 0.0 +501-1000 0.0 0.0 0.0 0.0 +'1001+ 0.0 0.0 0.0 0.0