Mercurial > repos > iuc > orthofinder_onlygroups
view test-data/results_fromblast/Statistics_PerSpecies.tsv @ 9:b3d25fae5389 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 179e3fd2aeb66484e49e6370e9507e24d118f4ea
| author | iuc |
|---|---|
| date | Mon, 15 Jan 2024 10:18:14 +0000 |
| parents | 974d8c28e586 |
| children |
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Mycoplasma_agalactiae Mycoplasma_gallisepticum Mycoplasma_genitalium Mycoplasma_hyopneumoniae Number of genes 820 763 476 674 Number of genes in orthogroups 659 619 436 562 Number of unassigned genes 161 144 40 112 Percentage of genes in orthogroups 80.4 81.1 91.6 83.4 Percentage of unassigned genes 19.6 18.9 8.4 16.6 Number of orthogroups containing species 466 470 394 449 Percentage of orthogroups containing species 74.9 75.6 63.3 72.2 Number of species-specific orthogroups 42 15 4 35 Number of genes in species-specific orthogroups 189 116 9 112 Percentage of genes in species-specific orthogroups 23.0 15.2 1.9 16.6 Number of genes per-species in orthogroup Number of orthogroups Number of orthogroups Number of orthogroups Number of orthogroups '0 156 152 228 173 '1 392 423 367 398 '2 35 34 20 27 '3 25 4 5 10 '4 5 2 1 6 '5 3 0 0 2 '6 2 1 0 2 '7 0 2 0 2 '8 0 1 0 1 '9 0 1 0 0 '10 1 0 1 0 11-15 2 1 0 1 16-20 0 0 0 0 21-50 1 0 0 0 51-100 0 1 0 0 101-150 0 0 0 0 151-200 0 0 0 0 201-500 0 0 0 0 501-1000 0 0 0 0 '1001+ 0 0 0 0 Number of genes per-species in orthogroup Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups '0 25.1 24.4 36.7 27.8 '1 63.0 68.0 59.0 64.0 '2 5.6 5.5 3.2 4.3 '3 4.0 0.6 0.8 1.6 '4 0.8 0.3 0.2 1.0 '5 0.5 0.0 0.0 0.3 '6 0.3 0.2 0.0 0.3 '7 0.0 0.3 0.0 0.3 '8 0.0 0.2 0.0 0.2 '9 0.0 0.2 0.0 0.0 '10 0.2 0.0 0.2 0.0 11-15 0.3 0.2 0.0 0.2 16-20 0.0 0.0 0.0 0.0 21-50 0.2 0.0 0.0 0.0 51-100 0.0 0.2 0.0 0.0 101-150 0.0 0.0 0.0 0.0 151-200 0.0 0.0 0.0 0.0 201-500 0.0 0.0 0.0 0.0 501-1000 0.0 0.0 0.0 0.0 '1001+ 0.0 0.0 0.0 0.0 Number of genes per-species in orthogroup Number of genes Number of genes Number of genes Number of genes '0 0 0 0 0 '1 392 423 367 398 '2 70 68 40 54 '3 75 12 15 30 '4 20 8 4 24 '5 15 0 0 10 '6 12 6 0 12 '7 0 14 0 14 '8 0 8 0 8 '9 0 9 0 0 '10 10 0 10 0 11-15 26 13 0 12 16-20 0 0 0 0 21-50 39 0 0 0 51-100 0 58 0 0 101-150 0 0 0 0 151-200 0 0 0 0 201-500 0 0 0 0 501-1000 0 0 0 0 '1001+ 0 0 0 0 Number of genes per-species in orthogroup Percentage of genes Percentage of genes Percentage of genes Percentage of genes '0 0.0 0.0 0.0 0.0 '1 47.8 55.4 77.1 59.1 '2 8.5 8.9 8.4 8.0 '3 9.1 1.6 3.2 4.5 '4 2.4 1.0 0.8 3.6 '5 1.8 0.0 0.0 1.5 '6 1.5 0.8 0.0 1.8 '7 0.0 1.8 0.0 2.1 '8 0.0 1.0 0.0 1.2 '9 0.0 1.2 0.0 0.0 '10 1.2 0.0 2.1 0.0 11-15 3.2 1.7 0.0 1.8 16-20 0.0 0.0 0.0 0.0 21-50 4.8 0.0 0.0 0.0 51-100 0.0 7.6 0.0 0.0 101-150 0.0 0.0 0.0 0.0 151-200 0.0 0.0 0.0 0.0 201-500 0.0 0.0 0.0 0.0 501-1000 0.0 0.0 0.0 0.0 '1001+ 0.0 0.0 0.0 0.0