Mercurial > repos > iuc > package_abyss_1_9_0

changeset 0:ded58f1da91c draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_abyss_1_9_0 commit 0887009a23d176b21536c9fd8a18c4fecc417d4f
author iuc
date Fri, 19 Jun 2015 09:25:35 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 36 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Jun 19 09:25:35 2015 -0400
@@ -0,0 +1,36 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="boost" version="1.57">
+        <repository changeset_revision="a0dd39685fce" name="package_boost_1_57" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="sparsehash" version="2.0.2">
+        <repository changeset_revision="2cc9627ae29c" name="package_sparsehash_2_0_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="sqlite" version="3.8.3">
+        <repository changeset_revision="706b1f3b1fc0" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="abyss" version="1.9.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://github.com/bcgsc/abyss/releases/download/1.9.0/abyss-1.9.0.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="a0dd39685fce" name="package_boost_1_57" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="boost" version="1.57" />
+                    </repository>
+                    <repository changeset_revision="2cc9627ae29c" name="package_sparsehash_2_0_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="sparsehash" version="2.0.2" />
+                    </repository>
+                    <repository changeset_revision="706b1f3b1fc0" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="sqlite" version="3.8.3" />
+                    </repository>
+                </action>
+                <action type="autoconf" />
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="set_to" name="ABYSS_ROOT_PATH">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>ABySS is a de novo sequence assembler intended for short paired-end reads and large genomes.</readme>
+    </package>
+</tool_dependency>