Mercurial > repos > iuc > package_blat_35x1
comparison tool_dependencies.xml @ 1:963992658bf6 draft
Uploaded
| author | bgruening |
|---|---|
| date | Fri, 06 Sep 2013 03:48:34 -0400 |
| parents | 5d0050880725 |
| children | 84c54f1fa280 |
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| 0:5d0050880725 | 1:963992658bf6 |
|---|---|
| 1 <tool_dependency> | 1 <tool_dependency> |
| 2 <package name="blat" version="35x1"> | 2 <package name="blat" version="35x1"> |
| 3 <install version="1.0"> | 3 <install version="1.0"> |
| 4 <actions> | 4 <actions> |
| 5 | |
| 5 <action type="download_binary"> | 6 <action type="download_binary"> |
| 6 <url_template os="linux" architecture="x86_64">https://github.com/bgruening/download_store/raw/master/ucsc/linux/x86_64/blat_35x1</url_template> | 7 <url_template os="linux" architecture="x86_64">https://github.com/bgruening/download_store/raw/master/ucsc/linux/x86_64/blat_35x1</url_template> |
| 7 <url_template os="darwin" architecture="i686">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/i386/blat_35x1</url_template> | 8 <url_template os="darwin" architecture="i686">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/i386/blat_35x1</url_template> |
| 8 <url_template os="darwin" architecture="i386">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/i386/blat_35x1</url_template> | 9 <url_template os="darwin" architecture="i386">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/i386/blat_35x1</url_template> |
| 9 <url_template os="darwin" architecture="x86_64">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/x86_64/blat_35x1</url_template> | 10 <url_template os="darwin" architecture="x86_64">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/x86_64/blat_35x1</url_template> |
| 18 </action> | 19 </action> |
| 19 <action type="set_environment"> | 20 <action type="set_environment"> |
| 20 <environment_variable name="PATH" action="append_to">$INSTALL_DIR</environment_variable> | 21 <environment_variable name="PATH" action="append_to">$INSTALL_DIR</environment_variable> |
| 21 <environment_variable name="BLAT_PATH" action="append_to">$INSTALL_DIR</environment_variable> | 22 <environment_variable name="BLAT_PATH" action="append_to">$INSTALL_DIR</environment_variable> |
| 22 </action> | 23 </action> |
| 24 | |
| 25 <!-- | |
| 26 Alternative version from Nicola Soranzo. | |
| 27 <action type="download_by_url" target_filename="blatSrc.zip">http://hgwdev.cse.ucsc.edu/~kent/src/blatSrc35.zip</action> | |
| 28 <action type="shell_command">export MACHTYPE=`uname -m` && export HOME=$INSTALL_DIR && mkdir -p $HOME/bin/$MACHTYPE && make</action> | |
| 29 <action type="set_environment"> | |
| 30 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/`uname -m`</environment_variable> | |
| 31 </action> | |
| 32 --> | |
| 33 | |
| 23 </actions> | 34 </actions> |
| 24 </install> | 35 </install> |
| 25 <readme> | 36 <readme> |
| 26 blat programm from the UCSC. http://genome.ucsc.edu/FAQ/FAQblat.html | 37 blat programm from the UCSC. http://genome.ucsc.edu/FAQ/FAQblat.html |
| 27 | 38 |