Mercurial > repos > iuc > package_blat_35x1

changeset 1:963992658bf6 draft

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Uploaded
author bgruening
date Fri, 06 Sep 2013 03:48:34 -0400
parents 5d0050880725
children 84c54f1fa280
files tool_dependencies.xml
diffstat 1 files changed, 11 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Sep 06 03:44:34 2013 -0400
+++ b/tool_dependencies.xml	Fri Sep 06 03:48:34 2013 -0400
@@ -2,6 +2,7 @@
     <package name="blat" version="35x1">
         <install version="1.0">
             <actions>
+
                 <action type="download_binary">
                     <url_template os="linux" architecture="x86_64">https://github.com/bgruening/download_store/raw/master/ucsc/linux/x86_64/blat_35x1</url_template>
                     <url_template os="darwin" architecture="i686">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/i386/blat_35x1</url_template>
@@ -20,6 +21,16 @@
                     <environment_variable name="PATH" action="append_to">$INSTALL_DIR</environment_variable>
                     <environment_variable name="BLAT_PATH" action="append_to">$INSTALL_DIR</environment_variable>
                 </action>
+
+                <!--
+                Alternative version from Nicola Soranzo.
+                <action type="download_by_url" target_filename="blatSrc.zip">http://hgwdev.cse.ucsc.edu/~kent/src/blatSrc35.zip</action>
+                <action type="shell_command">export MACHTYPE=`uname -m` &amp;&amp; export HOME=$INSTALL_DIR &amp;&amp; mkdir -p $HOME/bin/$MACHTYPE &amp;&amp; make</action>
+                <action type="set_environment">
+                  <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/`uname -m`</environment_variable>
+                </action>
+                -->
+
             </actions>
         </install>
         <readme>