Mercurial > repos > iuc > package_bowtie_1_1_2

annotate tool_dependencies.xml @ 0:a1c1a92e13a6 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
author iuc
date Fri, 20 Nov 2015 06:48:21 -0500
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a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
iuc
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1 <?xml version="1.0"?>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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2 <tool_dependency>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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3 <package name="bowtie" version="1.1.2">
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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4 <install version="1.0">
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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5 <actions>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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6 <action type="download_by_url" sha256sum="b72c62bb00046d10e83ad1fb51049bb88fd8fa01745ce13c5aeadb8c008f0a73">https://codeload.github.com/BenLangmead/bowtie/zip/v1.1.2</action>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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7 <action type="shell_command">make</action>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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8 <action type="move_file">
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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9 <source>bowtie</source>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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10 <destination>$INSTALL_DIR</destination>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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11 </action>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
iuc
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12 <action type="move_file">
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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13 <source>bowtie-align-s</source>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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14 <destination>$INSTALL_DIR</destination>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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15 </action>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
iuc
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16 <action type="move_file">
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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17 <source>bowtie-align-l</source>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
iuc
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18 <destination>$INSTALL_DIR</destination>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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19 </action>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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20 <action type="move_file">
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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21 <source>bowtie-build</source>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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22 <destination>$INSTALL_DIR</destination>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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23 </action>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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24 <action type="move_file">
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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25 <source>bowtie-build-l</source>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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26 <destination>$INSTALL_DIR</destination>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
iuc
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27 </action>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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28 <action type="move_file">
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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29 <source>bowtie-build-s</source>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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30 <destination>$INSTALL_DIR</destination>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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31 </action>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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32 <action type="move_file">
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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33 <source>bowtie-inspect</source>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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34 <destination>$INSTALL_DIR</destination>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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35 </action>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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36 <action type="move_file">
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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37 <source>bowtie-inspect-l</source>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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38 <destination>$INSTALL_DIR</destination>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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39 </action>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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40 <action type="move_file">
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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41 <source>bowtie-inspect-s</source>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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42 <destination>$INSTALL_DIR</destination>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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43 </action>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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44 <action type="set_environment">
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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45 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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46 </action>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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47 </actions>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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48 </install>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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49 <readme></readme>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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50 </package>
a1c1a92e13a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_1_1_2 commit 993ba7c18dcabb15aa76bca2fcc9211a5f58bf1d
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51 </tool_dependency>