Mercurial > repos > iuc > package_bowtie_2_2_5
comparison tool_dependencies.xml @ 1:8b300d21e6bd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
| author | iuc |
|---|---|
| date | Fri, 17 Jul 2015 10:11:42 -0400 |
| parents | 39c07d717634 |
| children | 30bd7eaeddbf |
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| 0:39c07d717634 | 1:8b300d21e6bd |
|---|---|
| 8 <action type="move_directory_files"> | 8 <action type="move_directory_files"> |
| 9 <source_directory>.</source_directory> | 9 <source_directory>.</source_directory> |
| 10 <destination_directory>$INSTALL_DIR</destination_directory> | 10 <destination_directory>$INSTALL_DIR</destination_directory> |
| 11 </action> | 11 </action> |
| 12 </actions> | 12 </actions> |
| 13 <actions> | |
| 14 <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.5/bowtie2-2.2.5-source.zip</action> | |
| 15 <action type="shell_command">make</action> | |
| 16 <action type="move_file"> | |
| 17 <source>bowtie2</source> | |
| 18 <destination>$INSTALL_DIR/bin</destination> | |
| 19 </action> | |
| 20 <action type="move_file"> | |
| 21 <source>bowtie2-build</source> | |
| 22 <destination>$INSTALL_DIR/bin</destination> | |
| 23 </action> | |
| 24 <action type="move_file"> | |
| 25 <source>bowtie2-inspect</source> | |
| 26 <destination>$INSTALL_DIR/bin</destination> | |
| 27 </action> | |
| 28 <action type="move_file"> | |
| 29 <source>bowtie</source> | |
| 30 <destination>$INSTALL_DIR/bin</destination> | |
| 31 </action> | |
| 32 <action type="move_file"> | |
| 33 <source>bowtie-build</source> | |
| 34 <destination>$INSTALL_DIR/bin</destination> | |
| 35 </action> | |
| 36 <action type="move_file"> | |
| 37 <source>bowtie-inspect</source> | |
| 38 <destination>$INSTALL_DIR/bin</destination> | |
| 39 </action> | |
| 40 </actions> | |
| 13 <action type="set_environment"> | 41 <action type="set_environment"> |
| 14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | 42 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
| 15 </action> | 43 </action> |
| 16 </actions_group> | 44 </actions_group> |
| 17 </install> | 45 </install> |