Mercurial > repos > iuc > package_bowtie_2_2_5
annotate tool_dependencies.xml @ 1:8b300d21e6bd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author | iuc |
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date | Fri, 17 Jul 2015 10:11:42 -0400 |
parents | 39c07d717634 |
children | 30bd7eaeddbf |
rev | line source |
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0 | 1 <?xml version="1.0"?> |
2 <tool_dependency> | |
3 <package name="bowtie2" version="2.2.5"> | |
4 <install version="1.0"> | |
5 <actions_group> | |
6 <actions os="linux" architecture="x86_64"> | |
7 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/bowtie2/bowtie2-2.2.5-Linux-x86_64.tar.gz</action> | |
8 <action type="move_directory_files"> | |
9 <source_directory>.</source_directory> | |
10 <destination_directory>$INSTALL_DIR</destination_directory> | |
11 </action> | |
12 </actions> | |
1
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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13 <actions> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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14 <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.5/bowtie2-2.2.5-source.zip</action> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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15 <action type="shell_command">make</action> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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16 <action type="move_file"> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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17 <source>bowtie2</source> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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18 <destination>$INSTALL_DIR/bin</destination> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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19 </action> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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20 <action type="move_file"> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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21 <source>bowtie2-build</source> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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22 <destination>$INSTALL_DIR/bin</destination> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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23 </action> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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0
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24 <action type="move_file"> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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25 <source>bowtie2-inspect</source> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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26 <destination>$INSTALL_DIR/bin</destination> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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27 </action> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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0
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28 <action type="move_file"> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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29 <source>bowtie</source> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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30 <destination>$INSTALL_DIR/bin</destination> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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31 </action> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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0
diff
changeset
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32 <action type="move_file"> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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diff
changeset
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33 <source>bowtie-build</source> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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34 <destination>$INSTALL_DIR/bin</destination> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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35 </action> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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36 <action type="move_file"> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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37 <source>bowtie-inspect</source> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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38 <destination>$INSTALL_DIR/bin</destination> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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39 </action> |
8b300d21e6bd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_5 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
iuc
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40 </actions> |
0 | 41 <action type="set_environment"> |
42 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
43 </action> | |
44 </actions_group> | |
45 </install> | |
46 <readme></readme> | |
47 </package> | |
48 </tool_dependency> |