Mercurial > repos > iuc > package_bowtie_2_2_6
comparison tool_dependencies.xml @ 0:6d6cca69a34a draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89
| author | iuc |
|---|---|
| date | Mon, 16 Nov 2015 09:43:21 -0500 |
| parents | |
| children | 0d9cd7487cc9 |
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| -1:000000000000 | 0:6d6cca69a34a |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="bowtie2" version="2.2.6"> | |
| 4 <install version="1.0"> | |
| 5 <actions_group> | |
| 6 <actions os="linux" architecture="x86_64"> | |
| 7 <action md5sum="074884c2989437491685cfdec649d424" type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-linux-x86_64.zip</action> | |
| 8 <action type="move_directory_files"> | |
| 9 <source_directory>.</source_directory> | |
| 10 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 11 </action> | |
| 12 </actions> | |
| 13 <actions os="darwin" architecture="x86_64"> | |
| 14 <action md5sum="2ff07b1358844bda4b2b1055507fee5b" type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-macos-x86_64.zip</action> | |
| 15 <action type="move_directory_files"> | |
| 16 <source_directory>.</source_directory> | |
| 17 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 18 </action> | |
| 19 </actions> | |
| 20 <actions> | |
| 21 <action md5sum="6a67cf80f4551e24c5e1430a2b2e305a" type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-source.zip</action> | |
| 22 <action type="shell_command">make</action> | |
| 23 <action type="move_file"> | |
| 24 <source>bowtie2</source> | |
| 25 <destination>$INSTALL_DIR/bin</destination> | |
| 26 </action> | |
| 27 <action type="move_file"> | |
| 28 <source>bowtie2-build</source> | |
| 29 <destination>$INSTALL_DIR/bin</destination> | |
| 30 </action> | |
| 31 <action type="move_file"> | |
| 32 <source>bowtie2-inspect</source> | |
| 33 <destination>$INSTALL_DIR/bin</destination> | |
| 34 </action> | |
| 35 <action type="move_file"> | |
| 36 <source>bowtie</source> | |
| 37 <destination>$INSTALL_DIR/bin</destination> | |
| 38 </action> | |
| 39 <action type="move_file"> | |
| 40 <source>bowtie-build</source> | |
| 41 <destination>$INSTALL_DIR/bin</destination> | |
| 42 </action> | |
| 43 <action type="move_file"> | |
| 44 <source>bowtie-inspect</source> | |
| 45 <destination>$INSTALL_DIR/bin</destination> | |
| 46 </action> | |
| 47 </actions> | |
| 48 <action type="set_environment"> | |
| 49 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 50 </action> | |
| 51 </actions_group> | |
| 52 </install> | |
| 53 <readme></readme> | |
| 54 </package> | |
| 55 </tool_dependency> |