Mercurial > repos > iuc > package_cummerbund_2_8_2
changeset 0:5aacc6d160ed draft
Uploaded tool dependency definition.
| author | iuc |
|---|---|
| date | Sun, 21 Dec 2014 16:43:39 -0500 |
| parents | |
| children | 271dd1fcbb47 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 83 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Sun Dec 21 16:43:39 2014 -0500 @@ -0,0 +1,83 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="R" version="3.1.2"> + <repository changeset_revision="7cb487a32bde" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="cummeRbund" version="2.8.2"> + <install version="1.0"> + <actions> + <action type="setup_r_environment"> + <repository changeset_revision="7cb487a32bde" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="R" version="3.1.2" /> + </repository> + <package>http://cran.r-project.org/src/contrib/DBI_0.3.1.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/bitops_1.0-6.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/RCurl_1.95-4.5.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/XML_3.98-1.1.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/RSQLite_1.0.0.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/digest_0.6.7.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/Rcpp_0.11.3.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/plyr_1.8.1.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/gtable_0.1.2.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/proto_0.3-10.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/stringr_0.6.2.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/reshape2_1.4.1.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/dichromat_2.0-0.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/labeling_0.3.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/colorspace_1.2-4.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/munsell_0.4.2.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/scales_0.2.4.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/ggplot2_1.0.0.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/fastcluster_1.1.13.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/plyr_1.8.1.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/getopt_1.20.0.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/rjson_0.2.15.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/findpython_1.0.1.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/argparse_1.0.1.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/lattice_0.20-29.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/latticeExtra_0.6-26.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/checkmate_1.5.1.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/BBmisc_1.8.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/brew_1.0-6.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/fail_1.2.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/base64enc_0.1-2.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/sendmailR_1.2-1.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/BatchJobs_1.5.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/iterators_1.0.7.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/codetools_0.2-9.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/foreach_1.4.2.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/Formula_1.1-2.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/survival_2.37-7.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/acepack_1.3-3.3.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/Hmisc_3.14-6.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/R.methodsS3_1.6.1.tar.gz</package> + <package>http://cran.r-project.org/src/contrib/matrixStats_0.12.2.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/BiocGenerics_0.12.1.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/S4Vectors_0.4.0.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/IRanges_2.0.1.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomeInfoDb_1.2.4.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/XVector_0.6.0.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomicRanges_1.18.3.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/zlibbioc_1.12.0.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/Biostrings_2.34.1.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/Rsamtools_1.18.2.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/BiocParallel_1.0.0.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/Biobase_2.26.0.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/AnnotationDbi_1.28.1.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/biomaRt_2.22.0.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomicAlignments_1.2.1.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/rtracklayer_1.26.2.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/BSgenome_1.34.0.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomicFeatures_1.18.3.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/VariantAnnotation_1.12.7.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/biovizBase_1.14.1.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/Gviz_1.10.3.tar.gz</package> + <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/cummeRbund_2.8.2.tar.gz</package> + </action> + </actions> + </install> + <readme> + </readme> + </package> +</tool_dependency>