Mercurial > repos > iuc > package_fastqc_0_11_4

changeset 0:a7f81f2554ad draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
author iuc
date Fri, 15 Jan 2016 10:22:44 -0500
parents
children a288b8869b7b
files tool_dependencies.xml
diffstat 1 files changed, 29 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Jan 15 10:22:44 2016 -0500
@@ -0,0 +1,29 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="FastQC" version="0.11.4">
+        <install version="1.0">
+            <actions_group>
+                <actions os="linux" architecture="x86_64">
+                    <action type="download_by_url" sha256sum="adb233f9fae7b02fe99e716664502adfec1b9a3fbb84eed4497122d6d33d1fe7">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_linux_all.zip</action>
+                    <action type="move_directory_files">
+                        <source_directory>../FastQC</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                        <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc</action>
+                    </action>
+                </actions>
+                <actions os="darwin" architecture="x86_64">
+                    <action type="download_by_url" sha256sum="bd4089397cfa1086d81e7b29508542d2478917df8d1ef1fb494616da1b8e651a">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_darwin_all.dmg</action>
+                    <action type="shell_command">
+                        hdiutil attach fastqc_v0.11.4.dmg &amp;&amp;
+                        cp -R /Volumes/FastQC/FastQC.app $INSTALL_DIR &amp;&amp;
+                        hdiutil detach /Volumes/FastQC
+                    </action>
+                    <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc</action>
+                </actions>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+    </package>
+</tool_dependency>