Mercurial > repos > iuc > package_gemini_0_18_1
comparison tool_dependencies.xml @ 1:49de32b47548 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 08d911cd6eeeb0520348313cb29c9eff83c4c573
| author | iuc |
|---|---|
| date | Thu, 18 Feb 2016 10:31:28 -0500 |
| parents | be869e11582f |
| children |
comparison
equal
deleted
inserted
replaced
| 0:be869e11582f | 1:49de32b47548 |
|---|---|
| 5 </package> | 5 </package> |
| 6 <package name="gemini" version="0.18.1"> | 6 <package name="gemini" version="0.18.1"> |
| 7 <install version="1.0"> | 7 <install version="1.0"> |
| 8 <actions> | 8 <actions> |
| 9 <!-- first action is always downloading --> | 9 <!-- first action is always downloading --> |
| 10 <action sha256sum="1d3d3b9d47555e1f62c1a870d8fd2ecbfc0bed25910cab31af5b585db3144a68" type="download_file">https://github.com/arq5x/gemini/archive/v0.18.1.tar.gz</action> | 10 <action sha256sum="1d3d3b9d47555e1f62c1a870d8fd2ecbfc0bed25910cab31af5b585db3144a68" type="download_by_url">https://github.com/arq5x/gemini/archive/v0.18.1.tar.gz</action> |
| 11 | 11 |
| 12 <!-- populate the environment variables from the dependend repos --> | 12 <!-- populate the environment variables from the dependend repos --> |
| 13 <action type="set_environment_for_install"> | 13 <action type="set_environment_for_install"> |
| 14 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | 14 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
| 15 <package name="zlib" version="1.2.8" /> | 15 <package name="zlib" version="1.2.8" /> |
| 16 </repository> | 16 </repository> |
| 17 </action> | 17 </action> |
| 18 | 18 |
| 19 <action type="shell_command"> | 19 <action type="shell_command"> |
| 20 export HOME=$INSTALL_DIR && python gemini_install.py $INSTALL_DIR $INSTALL_DIR --nodata --gemini-version 0.18.1 | 20 sed -i.bak -e 's/^gemini=0.18.1=py27_7/gemini=0.18.1=py27_2/g' ./versioning/0.18.1/requirements_conda.txt |
| 21 </action> | |
| 22 | |
| 23 <action type="shell_command"> | |
| 24 export HOME=$INSTALL_DIR && python ./gemini/scripts/gemini_install.py $INSTALL_DIR $INSTALL_DIR --nodata --gemini-version 0.18.1 | |
| 21 </action> | 25 </action> |
| 22 | 26 |
| 23 <action type="set_environment"> | 27 <action type="set_environment"> |
| 24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/anaconda/bin</environment_variable> | 28 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/anaconda/bin</environment_variable> |
| 25 <environment_variable action="set_to" name="HOME">.</environment_variable> | 29 <environment_variable action="set_to" name="HOME">.</environment_variable> |